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Biodegradation-induced signatures in sediment pore water dissolved organic matter: Implications from artificial sediments composed of two contrasting sources.

Derrien M, Shin KH, Hur J.

Sci Total Environ. 2019 Aug 1;694:133714. doi: 10.1016/j.scitotenv.2019.133714. [Epub ahead of print]


Characterization of aquatic organic matter: Assessment, perspectives and research priorities.

Derrien M, Brogi SR, Gonçalves-Araujo R.

Water Res. 2019 Oct 15;163:114908. doi: 10.1016/j.watres.2019.114908. Epub 2019 Jul 23. Review.


In-Depth Assessment of the Effect of Sodium Azide on the Optical Properties of Dissolved Organic Matter.

Retelletti Brogi S, Derrien M, Hur J.

J Fluoresc. 2019 Jun 19. doi: 10.1007/s10895-019-02398-w. [Epub ahead of print]


Fasting breath H2 and gut microbiota metabolic potential are associated with the response to a fermented milk product in irritable bowel syndrome.

Le Nevé B, Derrien M, Tap J, Brazeilles R, Cools Portier S, Guyonnet D, Ohman L, Störsrud S, Törnblom H, Simrén M.

PLoS One. 2019 Apr 4;14(4):e0214273. doi: 10.1371/journal.pone.0214273. eCollection 2019.


The potential probiotic Lactobacillus rhamnosus CNCM I-3690 strain protects the intestinal barrier by stimulating both mucus production and cytoprotective response.

Martín R, Chamignon C, Mhedbi-Hajri N, Chain F, Derrien M, Escribano-Vázquez U, Garault P, Cotillard A, Pham HP, Chervaux C, Bermúdez-Humarán LG, Smokvina T, Langella P.

Sci Rep. 2019 Apr 1;9(1):5398. doi: 10.1038/s41598-019-41738-5.


Evidence for an association of gut microbial Clostridia with brain functional connectivity and gastrointestinal sensorimotor function in patients with irritable bowel syndrome, based on tripartite network analysis.

Labus JS, Osadchiy V, Hsiao EY, Tap J, Derrien M, Gupta A, Tillisch K, Le Nevé B, Grinsvall C, Ljungberg M, Öhman L, Törnblom H, Simren M, Mayer EA.

Microbiome. 2019 Mar 21;7(1):45. doi: 10.1186/s40168-019-0656-z.


Assessment on applicability of common source tracking tools for particulate organic matter in controlled end member mixing experiments.

Derrien M, Shin KH, Hur J.

Sci Total Environ. 2019 May 20;666:187-196. doi: 10.1016/j.scitotenv.2019.02.258. Epub 2019 Feb 18.


Faecal biomarkers can distinguish specific mammalian species in modern and past environments.

Harrault L, Milek K, Jardé E, Jeanneau L, Derrien M, Anderson DG.

PLoS One. 2019 Feb 7;14(2):e0211119. doi: 10.1371/journal.pone.0211119. eCollection 2019.


Effects of the long-term storage of human fecal microbiota samples collected in RNAlater.

Tap J, Cools-Portier S, Pavan S, Druesne A, Öhman L, Törnblom H, Simren M, Derrien M.

Sci Rep. 2019 Jan 24;9(1):601. doi: 10.1038/s41598-018-36953-5.


Fecal chromogranins and secretogranins are linked to the fecal and mucosal intestinal bacterial composition of IBS patients and healthy subjects.

Sundin J, Stridsberg M, Tap J, Derrien M, Le Nevé B, Doré J, Törnblom H, Simrén M, Öhman L.

Sci Rep. 2018 Nov 14;8(1):16821. doi: 10.1038/s41598-018-35241-6.


Altered intestinal antibacterial gene expression response profile in irritable bowel syndrome is linked to bacterial composition and immune activation.

Bennet SMP, Sundin J, Magnusson MK, Strid H, Tap J, Derrien M, Le Nevé B, Doré J, Törnblom H, Simrén M, Öhman L.

Neurogastroenterol Motil. 2018 Dec;30(12):e13468. doi: 10.1111/nmo.13468. Epub 2018 Sep 17.


Lactobacillus paracasei CNCM I-3689 reduces vancomycin-resistant Enterococcus persistence and promotes Bacteroidetes resilience in the gut following antibiotic challenge.

Crouzet L, Derrien M, Cherbuy C, Plancade S, Foulon M, Chalin B, van Hylckama Vlieg JET, Grompone G, Rigottier-Gois L, Serror P.

Sci Rep. 2018 Mar 23;8(1):5098. doi: 10.1038/s41598-018-23437-9.


Impact of ocean acidification and warming on the productivity of a rock pool community.

Legrand E, Riera P, Bohner O, Coudret J, Schlicklin F, Derrien M, Martin S.

Mar Environ Res. 2018 May;136:78-88. doi: 10.1016/j.marenvres.2018.02.010. Epub 2018 Feb 12.


Optical and molecular characterization of dissolved organic matter (DOM) in the Arctic ice core and the underlying seawater (Cambridge Bay, Canada): Implication for increased autochthonous DOM during ice melting.

Retelletti Brogi S, Ha SY, Kim K, Derrien M, Lee YK, Hur J.

Sci Total Environ. 2018 Jun 15;627:802-811. doi: 10.1016/j.scitotenv.2018.01.251. Epub 2018 Feb 2.


Estimation of different source contributions to sediment organic matter in an agricultural-forested watershed using end member mixing analyses based on stable isotope ratios and fluorescence spectroscopy.

Derrien M, Kim MS, Ock G, Hong S, Cho J, Shin KH, Hur J.

Sci Total Environ. 2018 Mar 15;618:569-578. doi: 10.1016/j.scitotenv.2017.11.067. Epub 2017 Nov 25.


Comparing discrimination capabilities of fluorescence spectroscopy versus FT-ICR-MS for sources and hydrophobicity of sediment organic matter.

Derrien M, Lee YK, Shin KH, Hur J.

Environ Sci Pollut Res Int. 2018 Jan;25(2):1892-1902. doi: 10.1007/s11356-017-0531-z. Epub 2017 Nov 4.


Towards standards for human fecal sample processing in metagenomic studies.

Costea PI, Zeller G, Sunagawa S, Pelletier E, Alberti A, Levenez F, Tramontano M, Driessen M, Hercog R, Jung FE, Kultima JR, Hayward MR, Coelho LP, Allen-Vercoe E, Bertrand L, Blaut M, Brown JRM, Carton T, Cools-Portier S, Daigneault M, Derrien M, Druesne A, de Vos WM, Finlay BB, Flint HJ, Guarner F, Hattori M, Heilig H, Luna RA, van Hylckama Vlieg J, Junick J, Klymiuk I, Langella P, Le Chatelier E, Mai V, Manichanh C, Martin JC, Mery C, Morita H, O'Toole PW, Orvain C, Patil KR, Penders J, Persson S, Pons N, Popova M, Salonen A, Saulnier D, Scott KP, Singh B, Slezak K, Veiga P, Versalovic J, Zhao L, Zoetendal EG, Ehrlich SD, Dore J, Bork P.

Nat Biotechnol. 2017 Nov;35(11):1069-1076. doi: 10.1038/nbt.3960. Epub 2017 Oct 2.


Lactobacillus paracasei feeding improves immune control of influenza infection in mice.

Belkacem N, Serafini N, Wheeler R, Derrien M, Boucinha L, Couesnon A, Cerf-Bensussan N, Gomperts Boneca I, Di Santo JP, Taha MK, Bourdet-Sicard R.

PLoS One. 2017 Sep 20;12(9):e0184976. doi: 10.1371/journal.pone.0184976. eCollection 2017.


Brain Structure and Response to Emotional Stimuli as Related to Gut Microbial Profiles in Healthy Women.

Tillisch K, Mayer EA, Gupta A, Gill Z, Brazeilles R, Le Nevé B, van Hylckama Vlieg JET, Guyonnet D, Derrien M, Labus JS.

Psychosom Med. 2017 Oct;79(8):905-913. doi: 10.1097/PSY.0000000000000493.


Spectroscopic and molecular characterization of humic substances (HS) from soils and sediments in a watershed: comparative study of HS chemical fractions and the origins.

Derrien M, Lee YK, Park JE, Li P, Chen M, Lee SH, Lee SH, Lee JB, Hur J.

Environ Sci Pollut Res Int. 2017 Jul;24(20):16933-16945. doi: 10.1007/s11356-017-9225-9. Epub 2017 Jun 2.


High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice.

Xiao L, Sonne SB, Feng Q, Chen N, Xia Z, Li X, Fang Z, Zhang D, Fjære E, Midtbø LK, Derrien M, Hugenholtz F, Tang L, Li J, Zhang J, Liu C, Hao Q, Vogel UB, Mortensen A, Kleerebezem M, Licht TR, Yang H, Wang J, Li Y, Arumugam M, Wang J, Madsen L, Kristiansen K.

Microbiome. 2017 Apr 8;5(1):43. doi: 10.1186/s40168-017-0258-6.


Lipid biomarkers and spectroscopic indices for identifying organic matter sources in aquatic environments: A review.

Derrien M, Yang L, Hur J.

Water Res. 2017 Apr 1;112:58-71. doi: 10.1016/j.watres.2017.01.023. Epub 2017 Jan 19. Review.


[Gut microbiota, the key for a better diet?]

Veiga P, Tap J, Derrien M.

Med Sci (Paris). 2016 Nov;32(11):999-1002. doi: 10.1051/medsci/20163211016. Epub 2016 Dec 23. Review. French.


Clostridium difficile colonization and antibiotics response in PolyFermS continuous model mimicking elderly intestinal fermentation.

Fehlbaum S, Chassard C, Poeker SA, Derrien M, Fourmestraux C, Lacroix C.

Gut Pathog. 2016 Dec 1;8:63. eCollection 2016.


Rethinking Diet to Aid Human-Microbe Symbiosis.

Derrien M, Veiga P.

Trends Microbiol. 2017 Feb;25(2):100-112. doi: 10.1016/j.tim.2016.09.011. Epub 2016 Oct 26. Review.


Homeostasis of the gut barrier and potential biomarkers.

Wells JM, Brummer RJ, Derrien M, MacDonald TT, Troost F, Cani PD, Theodorou V, Dekker J, Méheust A, de Vos WM, Mercenier A, Nauta A, Garcia-Rodenas CL.

Am J Physiol Gastrointest Liver Physiol. 2017 Mar 1;312(3):G171-G193. doi: 10.1152/ajpgi.00048.2015. Epub 2016 Dec 1. Review.


Identification of an Intestinal Microbiota Signature Associated With Severity of Irritable Bowel Syndrome.

Tap J, Derrien M, Törnblom H, Brazeilles R, Cools-Portier S, Doré J, Störsrud S, Le Nevé B, Öhman L, Simrén M.

Gastroenterology. 2017 Jan;152(1):111-123.e8. doi: 10.1053/j.gastro.2016.09.049. Epub 2016 Oct 7.



Le Nevé B, Brazeilles R, Derrien M, Tap J, Guyonnet D, Ohman L, Törnblom H, Simrén M.

Clin Gastroenterol Hepatol. 2016 Aug;14(8):1222-3. doi: 10.1016/j.cgh.2016.03.031. Epub 2016 Mar 31. No abstract available.


Effect of a long-term high-protein diet on survival, obesity development, and gut microbiota in mice.

Kiilerich P, Myrmel LS, Fjære E, Hao Q, Hugenholtz F, Sonne SB, Derrien M, Pedersen LM, Petersen RK, Mortensen A, Licht TR, Rømer MU, Vogel UB, Waagbø LJ, Giallourou N, Feng Q, Xiao L, Liu C, Liaset B, Kleerebezem M, Wang J, Madsen L, Kristiansen K.

Am J Physiol Endocrinol Metab. 2016 Jun 1;310(11):E886-99. doi: 10.1152/ajpendo.00363.2015. Epub 2016 Mar 29.


Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes.

Zhang C, Derrien M, Levenez F, Brazeilles R, Ballal SA, Kim J, Degivry MC, Quéré G, Garault P, van Hylckama Vlieg JE, Garrett WS, Doré J, Veiga P.

ISME J. 2016 Sep;10(9):2235-45. doi: 10.1038/ismej.2016.13. Epub 2016 Mar 8.


Akkermansia muciniphila and its role in regulating host functions.

Derrien M, Belzer C, de Vos WM.

Microb Pathog. 2017 May;106:171-181. doi: 10.1016/j.micpath.2016.02.005. Epub 2016 Feb 11. Review.


Design and Investigation of PolyFermS In Vitro Continuous Fermentation Models Inoculated with Immobilized Fecal Microbiota Mimicking the Elderly Colon.

Fehlbaum S, Chassard C, Haug MC, Fourmestraux C, Derrien M, Lacroix C.

PLoS One. 2015 Nov 11;10(11):e0142793. doi: 10.1371/journal.pone.0142793. eCollection 2015.


Lactulose Challenge Determines Visceral Sensitivity and Severity of Symptoms in Patients With Irritable Bowel Syndrome.

Le Nevé B, Brazeilles R, Derrien M, Tap J, Guyonnet D, Ohman L, Törnblom H, Simrén M.

Clin Gastroenterol Hepatol. 2016 Feb;14(2):226-33.e1-3. doi: 10.1016/j.cgh.2015.09.039. Epub 2015 Oct 20.


Host lysozyme-mediated lysis of Lactococcus lactis facilitates delivery of colitis-attenuating superoxide dismutase to inflamed colons.

Ballal SA, Veiga P, Fenn K, Michaud M, Kim JH, Gallini CA, Glickman JN, Quéré G, Garault P, Béal C, Derrien M, Courtin P, Kulakauskas S, Chapot-Chartier MP, van Hylckama Vlieg J, Garrett WS.

Proc Natl Acad Sci U S A. 2015 Jun 23;112(25):7803-8. doi: 10.1073/pnas.1501897112. Epub 2015 Jun 8.


Fate, activity, and impact of ingested bacteria within the human gut microbiota.

Derrien M, van Hylckama Vlieg JE.

Trends Microbiol. 2015 Jun;23(6):354-66. doi: 10.1016/j.tim.2015.03.002. Epub 2015 Apr 1. Review.


Sources and distribution of organic matter along the Ring of Cenotes, Yucatan, Mexico: sterol markers and statistical approaches.

Derrien M, Cabrera FA, Tavera NL, Kantún Manzano CA, Vizcaino SC.

Sci Total Environ. 2015 Apr 1;511:223-9. doi: 10.1016/j.scitotenv.2014.12.053. Epub 2014 Dec 26.


Fecal sterols, seasonal variability, and probable sources along the ring of cenotes, Yucatan, Mexico.

Arcega-Cabrera F, Velázquez-Tavera N, Fargher L, Derrien M, Noreña-Barroso E.

J Contam Hydrol. 2014 Nov 1;168:41-9. doi: 10.1016/j.jconhyd.2014.08.007. Epub 2014 Sep 4.


Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice.

Wang J, Tang H, Zhang C, Zhao Y, Derrien M, Rocher E, van-Hylckama Vlieg JE, Strissel K, Zhao L, Obin M, Shen J.

ISME J. 2015 Jan;9(1):1-15. doi: 10.1038/ismej.2014.99. Epub 2014 Jun 17.


Fermented dairy products modulate Citrobacter rodentium-induced colonic hyperplasia.

Collins JW, Chervaux C, Raymond B, Derrien M, Brazeilles R, Kosta A, Chambaud I, Crepin VF, Frankel G.

J Infect Dis. 2014 Oct 1;210(7):1029-41. doi: 10.1093/infdis/jiu205. Epub 2014 Apr 4.


Transient inflammatory-like state and microbial dysbiosis are pivotal in establishment of mucosal homeostasis during colonisation of germ-free mice.

El Aidy S, Derrien M, Aardema R, Hooiveld G, Richards SE, Dane A, Dekker J, Vreeken R, Levenez F, Doré J, Zoetendal EG, van Baarlen P, Kleerebezem M.

Benef Microbes. 2014 Mar;5(1):67-77. doi: 10.3920/BM2013.0018.


Mixing and reaction kinetics in porous media: an experimental pore scale quantification.

Anna Pd, Jimenez-Martinez J, Tabuteau H, Turuban R, Le Borgne T, Derrien M, Méheust Y.

Environ Sci Technol. 2014;48(1):508-16. doi: 10.1021/es403105b. Epub 2013 Dec 6.


Laxative treatment with polyethylene glycol decreases microbial primary bile salt dehydroxylation and lipid metabolism in the intestine of rats.

van der Wulp MY, Derrien M, Stellaard F, Wolters H, Kleerebezem M, Dekker J, Rings EH, Groen AK, Verkade HJ.

Am J Physiol Gastrointest Liver Physiol. 2013 Oct 1;305(7):G474-82. doi: 10.1152/ajpgi.00375.2012. Epub 2013 Jul 18.


Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity.

Everard A, Belzer C, Geurts L, Ouwerkerk JP, Druart C, Bindels LB, Guiot Y, Derrien M, Muccioli GG, Delzenne NM, de Vos WM, Cani PD.

Proc Natl Acad Sci U S A. 2013 May 28;110(22):9066-71. doi: 10.1073/pnas.1219451110. Epub 2013 May 13.


Dietary heme alters microbiota and mucosa of mouse colon without functional changes in host-microbe cross-talk.

IJssennagger N, Derrien M, van Doorn GM, Rijnierse A, van den Bogert B, Müller M, Dekker J, Kleerebezem M, van der Meer R.

PLoS One. 2012;7(12):e49868. doi: 10.1371/journal.pone.0049868. Epub 2012 Dec 11.


Gut bacteria-host metabolic interplay during conventionalisation of the mouse germfree colon.

El Aidy S, Derrien M, Merrifield CA, Levenez F, Doré J, Boekschoten MV, Dekker J, Holmes E, Zoetendal EG, van Baarlen P, Claus SP, Kleerebezem M.

ISME J. 2013 Apr;7(4):743-55. doi: 10.1038/ismej.2012.142. Epub 2012 Nov 22.


Epithelial-microbial crosstalk in polymeric Ig receptor deficient mice.

Reikvam DH, Derrien M, Islam R, Erofeev A, Grcic V, Sandvik A, Gaustad P, Meza-Zepeda LA, Jahnsen FL, Smidt H, Johansen FE.

Eur J Immunol. 2012 Nov;42(11):2959-70. doi: 10.1002/eji.201242543. Epub 2012 Sep 4.


Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome.

Vrieze A, Van Nood E, Holleman F, Salojärvi J, Kootte RS, Bartelsman JF, Dallinga-Thie GM, Ackermans MT, Serlie MJ, Oozeer R, Derrien M, Druesne A, Van Hylckama Vlieg JE, Bloks VW, Groen AK, Heilig HG, Zoetendal EG, Stroes ES, de Vos WM, Hoekstra JB, Nieuwdorp M.

Gastroenterology. 2012 Oct;143(4):913-6.e7. doi: 10.1053/j.gastro.2012.06.031. Epub 2012 Jun 20. Erratum in: Gastroenterology. 2013 Jan;144(1):250.


The gut microbiota elicits a profound metabolic reorientation in the mouse jejunal mucosa during conventionalisation.

El Aidy S, Merrifield CA, Derrien M, van Baarlen P, Hooiveld G, Levenez F, Doré J, Dekker J, Holmes E, Claus SP, Reijngoud DJ, Kleerebezem M.

Gut. 2013 Sep;62(9):1306-14. doi: 10.1136/gutjnl-2011-301955. Epub 2012 Jun 21.


Saturated fat stimulates obesity and hepatic steatosis and affects gut microbiota composition by an enhanced overflow of dietary fat to the distal intestine.

de Wit N, Derrien M, Bosch-Vermeulen H, Oosterink E, Keshtkar S, Duval C, de Vogel-van den Bosch J, Kleerebezem M, Müller M, van der Meer R.

Am J Physiol Gastrointest Liver Physiol. 2012 Sep 1;303(5):G589-99. doi: 10.1152/ajpgi.00488.2011. Epub 2012 Jun 14.


Origin of fecal contamination in waters from contrasted areas: stanols as Microbial Source Tracking markers.

Derrien M, Jardé E, Gruau G, Pourcher AM, Gourmelon M, Jadas-Hécart A, Pierson Wickmann AC.

Water Res. 2012 Sep 1;46(13):4009-16. doi: 10.1016/j.watres.2012.05.003. Epub 2012 May 18.


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