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Items: 1 to 50 of 112

1.

Methylation guide RNA evolution in archaea: structure, function and genomic organization of 110 C/D box sRNA families across six Pyrobaculum species.

Lui LM, Uzilov AV, Bernick DL, Corredor A, Lowe TM, Dennis PP.

Nucleic Acids Res. 2018 Jun 20;46(11):5678-5691. doi: 10.1093/nar/gky284.

2.

Free RNA polymerase in Escherichia coli.

Patrick M, Dennis PP, Ehrenberg M, Bremer H.

Biochimie. 2015 Dec;119:80-91. doi: 10.1016/j.biochi.2015.10.015. Epub 2015 Oct 19.

PMID:
26482806
3.

C/D box sRNA-guided 2'-O-methylation patterns of archaeal rRNA molecules.

Dennis PP, Tripp V, Lui L, Lowe T, Randau L.

BMC Genomics. 2015 Aug 22;16:632. doi: 10.1186/s12864-015-1839-z.

4.

Thermodynamic modeling of variations in the rate of RNA chain elongation of E. coli rrn operons.

Fange D, Mellenius H, Dennis PP, Ehrenberg M.

Biophys J. 2014 Jan 7;106(1):55-64. doi: 10.1016/j.bpj.2013.11.4487.

5.

Medium-dependent control of the bacterial growth rate.

Ehrenberg M, Bremer H, Dennis PP.

Biochimie. 2013 Apr;95(4):643-58. doi: 10.1016/j.biochi.2012.11.012. Epub 2012 Dec 7. Review.

PMID:
23228516
6.

Comparative genomic and transcriptional analyses of CRISPR systems across the genus Pyrobaculum.

Bernick DL, Cox CL, Dennis PP, Lowe TM.

Front Microbiol. 2012 Jul 13;3:251. doi: 10.3389/fmicb.2012.00251. eCollection 2012.

7.

Diversity of Antisense and Other Non-Coding RNAs in Archaea Revealed by Comparative Small RNA Sequencing in Four Pyrobaculum Species.

Bernick DL, Dennis PP, Lui LM, Lowe TM.

Front Microbiol. 2012 Jul 2;3:231. doi: 10.3389/fmicb.2012.00231. eCollection 2012.

8.

Discovery of Pyrobaculum small RNA families with atypical pseudouridine guide RNA features.

Bernick DL, Dennis PP, Höchsmann M, Lowe TM.

RNA. 2012 Mar;18(3):402-11. doi: 10.1261/rna.031385.111. Epub 2012 Jan 26.

9.

Maximum rrn promoter activity in Escherichia coli at saturating concentrations of free RNA polymerase.

Ehrenberg M, Dennis PP, Bremer H.

Biochimie. 2010 Jan;92(1):12-20. doi: 10.1016/j.biochi.2009.10.002. Epub 2009 Oct 14.

PMID:
19835927
10.

Varying rate of RNA chain elongation during rrn transcription in Escherichia coli.

Dennis PP, Ehrenberg M, Fange D, Bremer H.

J Bacteriol. 2009 Jun;191(11):3740-6. doi: 10.1128/JB.00128-09. Epub 2009 Mar 27.

11.

Modulation of Chemical Composition and Other Parameters of the Cell at Different Exponential Growth Rates.

Bremer H, Dennis PP.

EcoSal Plus. 2008 Sep;3(1). doi: 10.1128/ecosal.5.2.3.

PMID:
26443740
12.

Probing the structure and function of an archaeal C/D-box methylation guide sRNA.

Omer AD, Zago M, Chang A, Dennis PP.

RNA. 2006 Sep;12(9):1708-20. Epub 2006 Jul 21.

13.

Small non-coding RNAs in Archaea.

Dennis PP, Omer A.

Curr Opin Microbiol. 2005 Dec;8(6):685-94. Epub 2005 Oct 26. Review.

PMID:
16256421
14.

The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus.

Zago MA, Dennis PP, Omer AD.

Mol Microbiol. 2005 Mar;55(6):1812-28.

15.

Control of rRNA synthesis in Escherichia coli: a systems biology approach.

Dennis PP, Ehrenberg M, Bremer H.

Microbiol Mol Biol Rev. 2004 Dec;68(4):639-68. Review.

16.

RNA-guided nucleotide modification of ribosomal and non-ribosomal RNAs in Archaea.

Ziesche SM, Omer AD, Dennis PP.

Mol Microbiol. 2004 Nov;54(4):980-93.

17.

RNA-modifying machines in archaea.

Omer AD, Ziesche S, Decatur WA, Fournier MJ, Dennis PP.

Mol Microbiol. 2003 May;48(3):617-29. Review.

18.

In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex.

Omer AD, Ziesche S, Ebhardt H, Dennis PP.

Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5289-94.

19.

A guided tour: small RNA function in Archaea.

Dennis PP, Omer A, Lowe T.

Mol Microbiol. 2001 May;40(3):509-19. Review.

21.

Genome sequence of Halobacterium species NRC-1.

Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, Goo YA, Leithauser B, Keller K, Cruz R, Danson MJ, Hough DW, Maddocks DG, Jablonski PE, Krebs MP, Angevine CM, Dale H, Isenbarger TA, Peck RF, Pohlschroder M, Spudich JL, Jung KW, Alam M, Freitas T, Hou S, Daniels CJ, Dennis PP, Omer AD, Ebhardt H, Lowe TM, Liang P, Riley M, Hood L, DasSarma S.

Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):12176-81.

22.

Homologs of small nucleolar RNAs in Archaea.

Omer AD, Lowe TM, Russell AG, Ebhardt H, Eddy SR, Dennis PP.

Science. 2000 Apr 21;288(5465):517-22.

24.

RNA polymerase of Aquifex pyrophilus: implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria.

Klenk HP, Meier TD, Durovic P, Schwass V, Lottspeich F, Dennis PP, Zillig W.

J Mol Evol. 1999 May;48(5):528-41.

PMID:
10198119
25.
26.
27.

Initiation and velocity of chromosome replication in Escherichia coli B/r and K-12.

Bipatnath M, Dennis PP, Bremer H.

J Bacteriol. 1998 Jan;180(2):265-73.

28.

A U3-like small nucleolar RNA in Archaea.

Russell AG, de Sa MM, Dennis PP.

Science. 1997 Aug 29;277(5330):1189. No abstract available.

PMID:
9297234
29.

Ancient ciphers: translation in Archaea.

Dennis PP.

Cell. 1997 Jun 27;89(7):1007-10. Review. No abstract available.

30.
31.

Evolutionary divergence and salinity-mediated selection in halophilic archaea.

Dennis PP, Shimmin LC.

Microbiol Mol Biol Rev. 1997 Mar;61(1):90-104. Review.

32.
33.

A NusG-like protein from Thermotoga maritima binds to DNA and RNA.

Liao D, Lurz R, Dobrinski B, Dennis PP.

J Bacteriol. 1996 Jul;178(14):4089-98.

34.

Preribosomal RNA processing in archaea: characterization of the RNP endonuclease mediated processing of precursor 16S rRNA in the thermoacidophile Sulfolobus acidocaldarius.

Potter S, Durovic P, Russell A, Wang X, de Jong-Wong D, Dennis PP.

Biochem Cell Biol. 1995 Nov-Dec;73(11-12):813-23. Review.

PMID:
8721997
35.
37.

Molecular phylogenies based on ribosomal protein L11, L1, L10, and L12 sequences.

Liao D, Dennis PP.

J Mol Evol. 1994 Apr;38(4):405-19.

PMID:
8007008
38.

Coupling between mRNA synthesis and mRNA stability in Escherichia coli.

Chow J, Dennis PP.

Mol Microbiol. 1994 Mar;11(5):919-31.

PMID:
7517486
39.
45.

Comparison of the structure of archaebacterial ribosomal proteins equivalent to proteins L11 and L1 from Escherichia coli ribosomes.

Ramirez C, Shimmin LC, Dennis PP, Matheson AT.

Protein Seq Data Anal. 1991 Aug;4(2):75-9.

PMID:
1946333
49.

Sequence and transcriptional pattern of the essential Escherichia coli secE-nusG operon.

Downing WL, Sullivan SL, Gottesman ME, Dennis PP.

J Bacteriol. 1990 Mar;172(3):1621-7.

50.

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