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Items: 44

1.

Effects of carbon nanotubes and derivatives of graphene oxide on soil bacterial diversity.

Forstner C, Orton TG, Wang P, Kopittke PM, Dennis PG.

Sci Total Environ. 2019 Sep 10;682:356-363. doi: 10.1016/j.scitotenv.2019.05.162. Epub 2019 May 16.

PMID:
31125749
2.

Technologies for the Selection, Culture and Metabolic Profiling of Unique Rhizosphere Microorganisms for Natural Product Discovery.

Gurusinghe S, Brooks TL, Barrow RA, Zhu X, Thotagamuwa A, Dennis PG, Gupta VVSR, Vanniasinkam T, Weston LA.

Molecules. 2019 May 21;24(10). pii: E1955. doi: 10.3390/molecules24101955.

3.

Soil amendments with ethylene precursor alleviate negative impacts of salinity on soil microbial properties and productivity.

Liu H, Khan MY, Carvalhais LC, Delgado-Baquerizo M, Yan L, Crawford M, Dennis PG, Singh B, Schenk PM.

Sci Rep. 2019 May 3;9(1):6892. doi: 10.1038/s41598-019-43305-4.

4.

Effects of graphene oxide and graphite on soil bacterial and fungal diversity.

Forstner C, Orton TG, Skarshewski A, Wang P, Kopittke PM, Dennis PG.

Sci Total Environ. 2019 Jun 25;671:140-148. doi: 10.1016/j.scitotenv.2019.03.360. Epub 2019 Mar 23.

PMID:
30928743
5.

Soil bacterial diversity is positively associated with air temperature in the maritime Antarctic.

Dennis PG, Newsham KK, Rushton SP, O'Donnell AG, Hopkins DW.

Sci Rep. 2019 Feb 25;9(1):2686. doi: 10.1038/s41598-019-39521-7.

6.

The effects of glyphosate, glufosinate, paraquat and paraquat-diquat on soil microbial activity and bacterial, archaeal and nematode diversity.

Dennis PG, Kukulies T, Forstner C, Orton TG, Pattison AB.

Sci Rep. 2018 Feb 1;8(1):2119. doi: 10.1038/s41598-018-20589-6.

7.

Ecological drivers of soil microbial diversity and soil biological networks in the Southern Hemisphere.

Delgado-Baquerizo M, Reith F, Dennis PG, Hamonts K, Powell JR, Young A, Singh BK, Bissett A.

Ecology. 2018 Mar;99(3):583-596. doi: 10.1002/ecy.2137. Epub 2018 Feb 12.

PMID:
29315530
8.

Inner Plant Values: Diversity, Colonization and Benefits from Endophytic Bacteria.

Liu H, Carvalhais LC, Crawford M, Singh E, Dennis PG, Pieterse CMJ, Schenk PM.

Front Microbiol. 2017 Dec 19;8:2552. doi: 10.3389/fmicb.2017.02552. eCollection 2017. Review.

9.

Plasmacytoid dendritic cells protect from viral bronchiolitis and asthma through semaphorin 4a-mediated T reg expansion.

Lynch JP, Werder RB, Loh Z, Sikder MAA, Curren B, Zhang V, Rogers MJ, Lane K, Simpson J, Mazzone SB, Spann K, Hayball J, Diener K, Everard ML, Blyth CC, Forstner C, Dennis PG, Murtaza N, Morrison M, Ó Cuív P, Zhang P, Haque A, Hill GR, Sly PD, Upham JW, Phipps S.

J Exp Med. 2018 Feb 5;215(2):537-557. doi: 10.1084/jem.20170298. Epub 2017 Dec 22.

10.

Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for Eucalyptus digestion.

Shiffman ME, Soo RM, Dennis PG, Morrison M, Tyson GW, Hugenholtz P.

PeerJ. 2017 Nov 16;5:e4075. doi: 10.7717/peerj.4075. eCollection 2017.

11.

Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence.

Yeoh YK, Dennis PG, Paungfoo-Lonhienne C, Weber L, Brackin R, Ragan MA, Schmidt S, Hugenholtz P.

Nat Commun. 2017 Aug 9;8(1):215. doi: 10.1038/s41467-017-00262-8.

12.

Circular linkages between soil biodiversity, fertility and plant productivity are limited to topsoil at the continental scale.

Delgado-Baquerizo M, Powell JR, Hamonts K, Reith F, Mele P, Brown MV, Dennis PG, Ferrari BC, Fitzgerald A, Young A, Singh BK, Bissett A.

New Phytol. 2017 Aug;215(3):1186-1196. doi: 10.1111/nph.14634. Epub 2017 Jun 13.

13.

Erratum to: Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database.

Bissett A, Fitzgerald A, Court L, Meintjes T, Mele PM, Reith F, Dennis PG, Breed MF, Brown B, Brown MV, Brugger J, Byrne M, Caddy-Retalic S, Carmody B, Coates DJ, Correa C, Ferrari BC, Gupta VVSR, Hamonts K, Haslem A, Hugenholtz P, Karan M, Koval J, Lowe AJ, Macdonald S, McGrath L, Martin D, Morgan M, North KI, Paungfoo-Lonhienne C, Pendall E, Phillips L, Pirzl R, Powell JR, Ragan MA, Schmidt S, Seymour N, Snape I, Stephen JR, Stevens M, Tinning M, Williams K, Yeoh YK, Zammit CM, Young A.

Gigascience. 2017 May 1;6(5). doi: 10.1093/gigascience/gix021. No abstract available.

14.

Jasmonic acid signalling and the plant holobiont.

Carvalhais LC, Schenk PM, Dennis PG.

Curr Opin Microbiol. 2017 Jun;37:42-47. doi: 10.1016/j.mib.2017.03.009. Epub 2017 Apr 22. Review.

PMID:
28437665
15.

The Influence of the Microbiome on Early-Life Severe Viral Lower Respiratory Infections and Asthma-Food for Thought?

Lynch JP, Sikder MA, Curren BF, Werder RB, Simpson J, Cuív PÓ, Dennis PG, Everard ML, Phipps S.

Front Immunol. 2017 Feb 16;8:156. doi: 10.3389/fimmu.2017.00156. eCollection 2017. Review.

16.

Cross-Comparison of Human Wastewater-Associated Molecular Markers in Relation to Fecal Indicator Bacteria and Enteric Viruses in Recreational Beach Waters.

Hughes B, Beale DJ, Dennis PG, Cook S, Ahmed W.

Appl Environ Microbiol. 2017 Mar 31;83(8). pii: e00028-17. doi: 10.1128/AEM.00028-17. Print 2017 Apr 15.

17.

Effects of jasmonic acid signalling on the wheat microbiome differ between body sites.

Liu H, Carvalhais LC, Schenk PM, Dennis PG.

Sci Rep. 2017 Jan 30;7:41766. doi: 10.1038/srep41766.

18.

Anode potential influences the structure and function of anodic electrode and electrolyte-associated microbiomes.

Dennis PG, Virdis B, Vanwonterghem I, Hassan A, Hugenholtz P, Tyson GW, Rabaey K.

Sci Rep. 2016 Dec 19;6:39114. doi: 10.1038/srep39114.

19.

Silver Nanoparticles Entering Soils via the Wastewater-Sludge-Soil Pathway Pose Low Risk to Plants but Elevated Cl Concentrations Increase Ag Bioavailability.

Wang P, Menzies NW, Dennis PG, Guo J, Forstner C, Sekine R, Lombi E, Kappen P, Bertsch PM, Kopittke PM.

Environ Sci Technol. 2016 Aug 2;50(15):8274-81. doi: 10.1021/acs.est.6b01180. Epub 2016 Jul 15.

PMID:
27380126
20.

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database.

Bissett A, Fitzgerald A, Court L, Meintjes T, Mele PM, Reith F, Dennis PG, Breed MF, Brown B, Brown MV, Brugger J, Byrne M, Caddy-Retalic S, Carmody B, Coates DJ, Correa C, Ferrari BC, Gupta VV, Hamonts K, Haslem A, Hugenholtz P, Karan M, Koval J, Lowe AJ, Macdonald S, McGrath L, Martin D, Morgan M, North KI, Paungfoo-Lonhienne C, Pendall E, Phillips L, Pirzl R, Powell JR, Ragan MA, Schmidt S, Seymour N, Snape I, Stephen JR, Stevens M, Tinning M, Williams K, Yeoh YK, Zammit CM, Young A.

Gigascience. 2016 May 18;5:21. doi: 10.1186/s13742-016-0126-5. eCollection 2016. Erratum in: Gigascience. 2017 May 1;6(5):.

21.

Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes.

Carvalhais LC, Dennis PG, Badri DV, Kidd BN, Vivanco JM, Schenk PM.

Mol Plant Microbe Interact. 2015 Sep;28(9):1049-58. doi: 10.1094/MPMI-01-15-0016-R. Epub 2015 Aug 26.

22.

The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application.

Yeoh YK, Paungfoo-Lonhienne C, Dennis PG, Robinson N, Ragan MA, Schmidt S, Hugenholtz P.

Environ Microbiol. 2016 May;18(5):1338-51. doi: 10.1111/1462-2920.12925. Epub 2015 Jul 30.

PMID:
26032777
23.

Development of bioelectrocatalytic activity stimulates mixed-culture reduction of glycerol in a bioelectrochemical system.

Zhou M, Freguia S, Dennis PG, Keller J, Rabaey K.

Microb Biotechnol. 2015 May;8(3):483-9. doi: 10.1111/1751-7915.12240. Epub 2015 Mar 26.

24.

Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix.

Pantos O, Bongaerts P, Dennis PG, Tyson GW, Hoegh-Guldberg O.

ISME J. 2015 Sep;9(9):1916-27. doi: 10.1038/ismej.2015.3. Epub 2015 Feb 10.

25.

Microbial ecology and biogeochemistry of continental Antarctic soils.

Cowan DA, Makhalanyane TP, Dennis PG, Hopkins DW.

Front Microbiol. 2014 Apr 9;5:154. doi: 10.3389/fmicb.2014.00154. eCollection 2014. Review.

26.

Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters.

Vanwonterghem I, Jensen PD, Dennis PG, Hugenholtz P, Rabaey K, Tyson GW.

ISME J. 2014 Oct;8(10):2015-28. doi: 10.1038/ismej.2014.50. Epub 2014 Apr 17.

27.

An expanded genomic representation of the phylum cyanobacteria.

Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P.

Genome Biol Evol. 2014 May;6(5):1031-45. doi: 10.1093/gbe/evu073.

28.

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.

Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW.

Microbiome. 2014 Apr 7;2:11. doi: 10.1186/2049-2618-2-11. eCollection 2014.

29.

Drivers of microbial community composition in mesophilic and thermophilic temperature-phased anaerobic digestion pre-treatment reactors.

Pervin HM, Dennis PG, Lim HJ, Tyson GW, Batstone DJ, Bond PL.

Water Res. 2013 Dec 1;47(19):7098-108. doi: 10.1016/j.watres.2013.07.053. Epub 2013 Oct 23.

PMID:
24216229
30.

Linking plant nutritional status to plant-microbe interactions.

Carvalhais LC, Dennis PG, Fan B, Fedoseyenko D, Kierul K, Becker A, von Wiren N, Borriss R.

PLoS One. 2013 Jul 16;8(7):e68555. doi: 10.1371/journal.pone.0068555. Print 2013.

31.

Effects of surface charge and hydrophobicity on anodic biofilm formation, community composition, and current generation in bioelectrochemical systems.

Guo K, Freguia S, Dennis PG, Chen X, Donose BC, Keller J, Gooding JJ, Rabaey K.

Environ Sci Technol. 2013 Jul 2;47(13):7563-70. doi: 10.1021/es400901u. Epub 2013 Jun 19.

PMID:
23745742
32.

Dynamics of cathode-associated microbial communities and metabolite profiles in a glycerol-fed bioelectrochemical system.

Dennis PG, Harnisch F, Yeoh YK, Tyson GW, Rabaey K.

Appl Environ Microbiol. 2013 Jul;79(13):4008-14. doi: 10.1128/AEM.00569-13. Epub 2013 Apr 19.

33.

Diverse populations of lake water bacteria exhibit chemotaxis towards inorganic nutrients.

Dennis PG, Seymour J, Kumbun K, Tyson GW.

ISME J. 2013 Aug;7(8):1661-4. doi: 10.1038/ismej.2013.47. Epub 2013 Mar 21.

34.

Activation of the jasmonic acid plant defence pathway alters the composition of rhizosphere bacterial communities.

Carvalhais LC, Dennis PG, Badri DV, Tyson GW, Vivanco JM, Schenk PM.

PLoS One. 2013;8(2):e56457. doi: 10.1371/journal.pone.0056457. Epub 2013 Feb 12.

35.

Spatial uniformity of microbial diversity in a continuous bioelectrochemical system.

Dennis PG, Guo K, Imelfort M, Jensen P, Tyson GW, Rabaey K.

Bioresour Technol. 2013 Feb;129:599-605. doi: 10.1016/j.biortech.2012.11.098. Epub 2012 Dec 4.

PMID:
23313735
36.

Coral reef invertebrate microbiomes correlate with the presence of photosymbionts.

Bourne DG, Dennis PG, Uthicke S, Soo RM, Tyson GW, Webster N.

ISME J. 2013 Jul;7(7):1452-8. doi: 10.1038/ismej.2012.172. Epub 2013 Jan 10. Erratum in: ISME J. 2013 Jul;7(7):1459.

37.

Application of metatranscriptomics to soil environments.

Carvalhais LC, Dennis PG, Tyson GW, Schenk PM.

J Microbiol Methods. 2012 Nov;91(2):246-51. doi: 10.1016/j.mimet.2012.08.011. Epub 2012 Aug 29. Review.

PMID:
22963791
38.

High-throughput amplicon sequencing reveals distinct communities within a corroding concrete sewer system.

Cayford BI, Dennis PG, Keller J, Tyson GW, Bond PL.

Appl Environ Microbiol. 2012 Oct;78(19):7160-2. doi: 10.1128/AEM.01582-12. Epub 2012 Jul 27.

39.

Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?

Dennis PG, Miller AJ, Hirsch PR.

FEMS Microbiol Ecol. 2010 Jun;72(3):313-27. doi: 10.1111/j.1574-6941.2010.00860.x. Epub 2010 Mar 8. Review.

40.

Isotopic evidence for the provenance and turnover of organic carbon by soil microorganisms in the Antarctic dry valleys.

Hopkins DW, Sparrow AD, Gregorich EG, Elberling B, Novis P, Fraser F, Scrimgeour C, Dennis PG, Meier-Augenstein W, Greenfield LG.

Environ Microbiol. 2009 Mar;11(3):597-608. doi: 10.1111/j.1462-2920.2008.01830.x.

PMID:
19278446
41.

Linking rhizoplane pH and bacterial density at the microhabitat scale.

Dennis PG, Hirsch PR, Smith SJ, Taylor RG, Valsami-Jones E, Miller AJ.

J Microbiol Methods. 2009 Jan;76(1):101-4. doi: 10.1016/j.mimet.2008.09.013. Epub 2008 Sep 24.

PMID:
18926861
42.

A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale.

Dennis PG, Miller AJ, Clark IM, Taylor RG, Valsami-Jones E, Hirsch PR.

J Microbiol Methods. 2008 Sep;75(1):12-8. doi: 10.1016/j.mimet.2008.04.013. Epub 2008 May 18.

PMID:
18558444
43.

Field evaluation of in situ remediation of a heavy metal contaminated soil using lime and red-mud.

Gray CW, Dunham SJ, Dennis PG, Zhao FJ, McGrath SP.

Environ Pollut. 2006 Aug;142(3):530-9.

PMID:
16321462
44.

Relationship of early readings of minimal inhibitory concentrations to the results of overnight tests.

Lampe MF, Aitken CL, Dennis PG, Forsythe PS, Patrick KE, Schoenknecht FD, Sherris JC.

Antimicrob Agents Chemother. 1975 Oct;8(4):429-33.

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