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Items: 1 to 50 of 241

1.

The role of FRIGIDA and FLOWERING LOCUS C genes in flowering time of Brassica rapa leafy vegetables.

Takada S, Akter A, Itabashi E, Nishida N, Shea DJ, Miyaji N, Mehraj H, Osabe K, Shimizu M, Takasaki-Yasuda T, Kakizaki T, Okazaki K, Dennis ES, Fujimoto R.

Sci Rep. 2019 Sep 25;9(1):13843. doi: 10.1038/s41598-019-50122-2.

2.

Long noncoding RNAs in Brassica rapa L. following vernalization.

Shea DJ, Nishida N, Takada S, Itabashi E, Takahashi S, Akter A, Miyaji N, Osabe K, Mehraj H, Shimizu M, Seki M, Kakizaki T, Okazaki K, Dennis ES, Fujimoto R.

Sci Rep. 2019 Jun 26;9(1):9302. doi: 10.1038/s41598-019-45650-w.

3.

DEMETER plays a role in DNA demethylation and disease response in somatic tissues of Arabidopsis.

Schumann U, Lee JM, Smith NA, Zhong C, Zhu JK, Dennis ES, Millar AA, Wang MB.

Epigenetics. 2019 Nov;14(11):1074-1087. doi: 10.1080/15592294.2019.1631113. Epub 2019 Jun 19.

PMID:
31189415
4.

Senescence and Defense Pathways Contribute to Heterosis.

Gonzalez-Bayon R, Shen Y, Groszmann M, Zhu A, Wang A, Allu AD, Dennis ES, Peacock WJ, Greaves IK.

Plant Physiol. 2019 May;180(1):240-252. doi: 10.1104/pp.18.01205. Epub 2019 Feb 1.

5.

Cotyledons contribute to plant growth and hybrid vigor in Arabidopsis.

Wang L, Liu PC, Wu LM, Tan J, Peacock WJ, Dennis ES.

Planta. 2019 Apr;249(4):1107-1118. doi: 10.1007/s00425-018-3068-6. Epub 2018 Dec 14.

PMID:
30552582
6.

Genome-wide characterization of DNA methylation, small RNA expression, and histone H3 lysine nine di-methylation in Brassica rapa L.

Takahashi S, Osabe K, Fukushima N, Takuno S, Miyaji N, Shimizu M, Takasaki-Yasuda T, Suzuki Y, Dennis ES, Seki M, Fujimoto R.

DNA Res. 2018 Oct 1;25(5):511-520. doi: 10.1093/dnares/dsy021.

7.

Recent research on the mechanism of heterosis is important for crop and vegetable breeding systems.

Fujimoto R, Uezono K, Ishikura S, Osabe K, Peacock WJ, Dennis ES.

Breed Sci. 2018 Mar;68(2):145-158. doi: 10.1270/jsbbs.17155. Epub 2018 Apr 12. Review.

8.

Correction to: Tissue and cell-specific transcriptomes in cotton reveal the subtleties of gene regulation underlying the diversity of plant secondary cell walls.

MacMillan CP, Birke H, Chuah A, Brill E, Tsuji Y, Ralph J, Dennis ES, Llewellyn D, Pettolino FA.

BMC Genomics. 2018 Apr 17;19(1):261. doi: 10.1186/s12864-018-4634-9.

9.

Comparison of transcriptome profiles by Fusarium oxysporum inoculation between Fusarium yellows resistant and susceptible lines in Brassica rapa L.

Miyaji N, Shimizu M, Miyazaki J, Osabe K, Sato M, Ebe Y, Takada S, Kaji M, Dennis ES, Fujimoto R, Okazaki K.

Plant Cell Rep. 2017 Dec;36(12):1841-1854. doi: 10.1007/s00299-017-2198-9. Epub 2017 Aug 17.

PMID:
28819684
10.
11.

Tissue and cell-specific transcriptomes in cotton reveal the subtleties of gene regulation underlying the diversity of plant secondary cell walls.

MacMillan CP, Birke H, Chuah A, Brill E, Tsuji Y, Ralph J, Dennis ES, Llewellyn D, Pettolino FA.

BMC Genomics. 2017 Jul 18;18(1):539. doi: 10.1186/s12864-017-3902-4. Erratum in: BMC Genomics. 2018 Apr 17;19(1):261.

12.

PIF4-controlled auxin pathway contributes to hybrid vigor in Arabidopsis thaliana.

Wang L, Wu LM, Greaves IK, Zhu A, Dennis ES, Peacock WJ.

Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):E3555-E3562. doi: 10.1073/pnas.1703179114. Epub 2017 Apr 10.

13.

Genome-wide analyses of four major histone modifications in Arabidopsis hybrids at the germinating seed stage.

Zhu A, Greaves IK, Dennis ES, Peacock WJ.

BMC Genomics. 2017 Feb 7;18(1):137. doi: 10.1186/s12864-017-3542-8.

14.

Patterns of gene expression in developing embryos of Arabidopsis hybrids.

Alonso-Peral MM, Trigueros M, Sherman B, Ying H, Taylor JM, Peacock WJ, Dennis ES.

Plant J. 2017 Mar;89(5):927-939. doi: 10.1111/tpj.13432. Epub 2017 Feb 10.

15.

Twenty-four-nucleotide siRNAs produce heritable trans-chromosomal methylation in F1 Arabidopsis hybrids.

Greaves IK, Eichten SR, Groszmann M, Wang A, Ying H, Peacock WJ, Dennis ES.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):E6895-E6902. Epub 2016 Oct 17.

16.

Role of DNA methylation in hybrid vigor in Arabidopsis thaliana.

Kawanabe T, Ishikura S, Miyaji N, Sasaki T, Wu LM, Itabashi E, Takada S, Shimizu M, Takasaki-Yasuda T, Osabe K, Peacock WJ, Dennis ES, Fujimoto R.

Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):E6704-E6711. Epub 2016 Oct 7.

17.

Early changes of gene activity in developing seedlings of Arabidopsis hybrids relative to parents may contribute to hybrid vigour.

Zhu A, Greaves IK, Liu PC, Wu L, Dennis ES, Peacock WJ.

Plant J. 2016 Nov;88(4):597-607. doi: 10.1111/tpj.13285. Epub 2016 Sep 17.

18.

Trichomes control flower bud shape by linking together young petals.

Tan J, Walford SA, Dennis ES, Llewellyn D.

Nat Plants. 2016 Jun 20;2:16093. doi: 10.1038/nplants.2016.93.

PMID:
27322517
19.

Development of primer sets that can verify the enrichment of histone modifications, and their application to examining vernalization-mediated chromatin changes in Brassica rapa L.

Kawanabe T, Osabe K, Itabashi E, Okazaki K, Dennis ES, Fujimoto R.

Genes Genet Syst. 2016 Jul 20;91(1):1-10. doi: 10.1266/ggs.15-00058. Epub 2016 Apr 12.

20.

Molecular and cellular characteristics of hybrid vigour in a commercial hybrid of Chinese cabbage.

Saeki N, Kawanabe T, Ying H, Shimizu M, Kojima M, Abe H, Okazaki K, Kaji M, Taylor JM, Sakakibara H, Peacock WJ, Dennis ES, Fujimoto R.

BMC Plant Biol. 2016 Feb 17;16:45. doi: 10.1186/s12870-016-0734-3.

21.

Genetic characterization of inbred lines of Chinese cabbage by DNA markers; towards the application of DNA markers to breeding of F1 hybrid cultivars.

Kawamura K, Kawanabe T, Shimizu M, Okazaki K, Kaji M, Dennis ES, Osabe K, Fujimoto R.

Data Brief. 2015 Dec 11;6:229-37. doi: 10.1016/j.dib.2015.11.058. eCollection 2016 Mar.

22.

Hormone-regulated defense and stress response networks contribute to heterosis in Arabidopsis F1 hybrids.

Groszmann M, Gonzalez-Bayon R, Lyons RL, Greaves IK, Kazan K, Peacock WJ, Dennis ES.

Proc Natl Acad Sci U S A. 2015 Nov 17;112(46):E6397-406. doi: 10.1073/pnas.1519926112. Epub 2015 Nov 2.

23.

Genome-wide association analyses reveal complex genetic architecture underlying natural variation for flowering time in canola.

Raman H, Raman R, Coombes N, Song J, Prangnell R, Bandaranayake C, Tahira R, Sundaramoorthi V, Killian A, Meng J, Dennis ES, Balasubramanian S.

Plant Cell Environ. 2016 Jun;39(6):1228-39. doi: 10.1111/pce.12644. Epub 2016 Feb 13.

24.

Hybrid mimics and hybrid vigor in Arabidopsis.

Wang L, Greaves IK, Groszmann M, Wu LM, Dennis ES, Peacock WJ.

Proc Natl Acad Sci U S A. 2015 Sep 1;112(35):E4959-67. doi: 10.1073/pnas.1514190112. Epub 2015 Aug 17.

25.

Epigenetic Changes in Hybrids.

Greaves IK, Gonzalez-Bayon R, Wang L, Zhu A, Liu PC, Groszmann M, Peacock WJ, Dennis ES.

Plant Physiol. 2015 Aug;168(4):1197-205. doi: 10.1104/pp.15.00231. Epub 2015 May 22. Review.

26.

Satellite RNAs interfere with the function of viral RNA silencing suppressors.

Shen WX, Au PC, Shi BJ, Smith NA, Dennis ES, Guo HS, Zhou CY, Wang MB.

Front Plant Sci. 2015 Apr 24;6:281. doi: 10.3389/fpls.2015.00281. eCollection 2015.

27.

Nicotiana small RNA sequences support a host genome origin of cucumber mosaic virus satellite RNA.

Zahid K, Zhao JH, Smith NA, Schumann U, Fang YY, Dennis ES, Zhang R, Guo HS, Wang MB.

PLoS Genet. 2015 Jan 8;11(1):e1004906. doi: 10.1371/journal.pgen.1004906. eCollection 2015 Jan. Erratum in: PLoS Genet. 2015 Apr;11(4):e1005196.

28.

DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis.

Le TN, Schumann U, Smith NA, Tiwari S, Au PC, Zhu QH, Taylor JM, Kazan K, Llewellyn DJ, Zhang R, Dennis ES, Wang MB.

Genome Biol. 2014 Sep 17;15(9):458. doi: 10.1186/s13059-014-0458-3.

29.

Intraspecific Arabidopsis hybrids show different patterns of heterosis despite the close relatedness of the parental genomes.

Groszmann M, Gonzalez-Bayon R, Greaves IK, Wang L, Huen AK, Peacock WJ, Dennis ES.

Plant Physiol. 2014 Sep;166(1):265-80. doi: 10.1104/pp.114.243998. Epub 2014 Jul 29.

30.

Members of the MYBMIXTA-like transcription factors may orchestrate the initiation of fiber development in cotton seeds.

Bedon F, Ziolkowski L, Walford SA, Dennis ES, Llewellyn DJ.

Front Plant Sci. 2014 May 1;5:179. doi: 10.3389/fpls.2014.00179. eCollection 2014. No abstract available.

31.

Identification of candidate genes for Fusarium yellows resistance in Chinese cabbage by differential expression analysis.

Shimizu M, Fujimoto R, Ying H, Pu ZJ, Ebe Y, Kawanabe T, Saeki N, Taylor JM, Kaji M, Dennis ES, Okazaki K.

Plant Mol Biol. 2014 Jun;85(3):247-57. doi: 10.1007/s11103-014-0182-0. Epub 2014 Mar 26.

PMID:
24668026
32.
33.

Inheritance of Trans Chromosomal Methylation patterns from Arabidopsis F1 hybrids.

Greaves IK, Groszmann M, Wang A, Peacock WJ, Dennis ES.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):2017-22. doi: 10.1073/pnas.1323656111. Epub 2014 Jan 21.

34.

Arabidopsis Polycomb Repressive Complex 2 binding sites contain putative GAGA factor binding motifs within coding regions of genes.

Deng W, Buzas DM, Ying H, Robertson M, Taylor J, Peacock WJ, Dennis ES, Helliwell C.

BMC Genomics. 2013 Aug 30;14:593. doi: 10.1186/1471-2164-14-593.

35.

The role of epigenetics in hybrid vigour.

Groszmann M, Greaves IK, Fujimoto R, Peacock WJ, Dennis ES.

Trends Genet. 2013 Dec;29(12):684-90. doi: 10.1016/j.tig.2013.07.004. Epub 2013 Aug 14. Review.

PMID:
23953922
36.

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T, Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E, Tan X, Tang H, Xu C, Wang J, Wang Z, Zhang D, Zhang L, Ashrafi H, Bedon F, Bowers JE, Brubaker CL, Chee PW, Das S, Gingle AR, Haigler CH, Harker D, Hoffmann LV, Hovav R, Jones DC, Lemke C, Mansoor S, ur Rahman M, Rainville LN, Rambani A, Reddy UK, Rong JK, Saranga Y, Scheffler BE, Scheffler JA, Stelly DM, Triplett BA, Van Deynze A, Vaslin MF, Waghmare VN, Walford SA, Wright RJ, Zaki EA, Zhang T, Dennis ES, Mayer KF, Peterson DG, Rokhsar DS, Wang X, Schmutz J.

Nature. 2012 Dec 20;492(7429):423-7. doi: 10.1038/nature11798.

PMID:
23257886
37.

Characterization of the defense transcriptome responsive to Fusarium oxysporum-infection in Arabidopsis using RNA-seq.

Zhu QH, Stephen S, Kazan K, Jin G, Fan L, Taylor J, Dennis ES, Helliwell CA, Wang MB.

Gene. 2013 Jan 10;512(2):259-66. doi: 10.1016/j.gene.2012.10.036. Epub 2012 Oct 27.

PMID:
23107761
38.

Molecular mechanisms of epigenetic variation in plants.

Fujimoto R, Sasaki T, Ishikawa R, Osabe K, Kawanabe T, Dennis ES.

Int J Mol Sci. 2012;13(8):9900-22. doi: 10.3390/ijms13089900. Epub 2012 Aug 8. Review.

39.

Multiple mechanisms and challenges for the application of allopolyploidy in plants.

Osabe K, Kawanabe T, Sasaki T, Ishikawa R, Okazaki K, Dennis ES, Kazama T, Fujimoto R.

Int J Mol Sci. 2012;13(7):8696-721. doi: 10.3390/ijms13078696. Epub 2012 Jul 13. Review.

40.

A comparison of transcriptome and epigenetic status between closely related species in the genus Arabidopsis.

Kawanabe T, Fujimoto R, Sasaki T, Taylor JM, Dennis ES.

Gene. 2012 Sep 15;506(2):301-9. doi: 10.1016/j.gene.2012.07.003. Epub 2012 Jul 13.

PMID:
22796129
41.

Trans-chromosomal methylation.

Greaves I, Groszmann M, Dennis ES, Peacock WJ.

Epigenetics. 2012 Aug;7(8):800-5. doi: 10.4161/epi.20820. Epub 2012 Jun 18. Review.

42.

Heterosis of Arabidopsis hybrids between C24 and Col is associated with increased photosynthesis capacity.

Fujimoto R, Taylor JM, Shirasawa S, Peacock WJ, Dennis ES.

Proc Natl Acad Sci U S A. 2012 May 1;109(18):7109-14. doi: 10.1073/pnas.1204464109. Epub 2012 Apr 9.

43.

Epidermal cell differentiation in cotton mediated by the homeodomain leucine zipper gene, GhHD-1.

Walford SA, Wu Y, Llewellyn DJ, Dennis ES.

Plant J. 2012 Aug;71(3):464-78. doi: 10.1111/j.1365-313X.2012.05003.x. Epub 2012 May 28.

44.

Trans chromosomal methylation in Arabidopsis hybrids.

Greaves IK, Groszmann M, Ying H, Taylor JM, Peacock WJ, Dennis ES.

Proc Natl Acad Sci U S A. 2012 Feb 28;109(9):3570-5. doi: 10.1073/pnas.1201043109. Epub 2012 Feb 13.

45.

Identification of high-temperature-responsive genes in cereals.

Hemming MN, Walford SA, Fieg S, Dennis ES, Trevaskis B.

Plant Physiol. 2012 Mar;158(3):1439-50. doi: 10.1104/pp.111.192013. Epub 2012 Jan 25.

46.

Genome wide gene expression in artificially synthesized amphidiploids of Arabidopsis.

Fujimoto R, Taylor JM, Sasaki T, Kawanabe T, Dennis ES.

Plant Mol Biol. 2011 Nov;77(4-5):419-31. doi: 10.1007/s11103-011-9820-y. Epub 2011 Sep 1.

PMID:
21882042
47.

Vernalization-repression of Arabidopsis FLC requires promoter sequences but not antisense transcripts.

Helliwell CA, Robertson M, Finnegan EJ, Buzas DM, Dennis ES.

PLoS One. 2011;6(6):e21513. doi: 10.1371/journal.pone.0021513. Epub 2011 Jun 21.

48.

The low temperature response pathways for cold acclimation and vernalization are independent.

Bond DM, Dennis ES, Finnegan EJ.

Plant Cell Environ. 2011 Oct;34(10):1737-48. doi: 10.1111/j.1365-3040.2011.02370.x. Epub 2011 Jul 1.

49.

Long non-coding RNA-mediated mechanisms independent of the RNAi pathway in animals and plants.

Au PC, Zhu QH, Dennis ES, Wang MB.

RNA Biol. 2011 May-Jun;8(3):404-14. Epub 2011 May 1. Review.

PMID:
21525783
50.

FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis.

Deng W, Ying H, Helliwell CA, Taylor JM, Peacock WJ, Dennis ES.

Proc Natl Acad Sci U S A. 2011 Apr 19;108(16):6680-5. doi: 10.1073/pnas.1103175108. Epub 2011 Apr 4.

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