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Items: 1 to 50 of 153

1.

Heart Sound Segmentation using Bidirectional LSTMs with Attention.

Fernando T, Ghaemmaghami H, Denman S, Sridharan S, Hussain N, Fookes C.

IEEE J Biomed Health Inform. 2019 Oct 25. doi: 10.1109/JBHI.2019.2949516. [Epub ahead of print]

PMID:
31670683
2.

Comparative genomics of rumen Butyrivibrio uncovers a continuum of polysaccharide-degrading capabilities.

Palevich N, Kelly WJ, Leahy SC, Denman S, Altermann E, Rakonjac J, Attwood GT.

Appl Environ Microbiol. 2019 Oct 25. pii: AEM.01993-19. doi: 10.1128/AEM.01993-19. [Epub ahead of print]

3.

Pseudomonas daroniae sp. nov. and Pseudomonas dryadis sp. nov., isolated from pedunculate oak affected by acute oak decline in the UK.

Bueno-Gonzalez V, Brady C, Denman S, Plummer S, Allainguillaume J, Arnold D.

Int J Syst Evol Microbiol. 2019 Nov;69(11):3368-3376. doi: 10.1099/ijsem.0.003615.

PMID:
31391144
4.

Draft Genome Sequence and Annotation of Sporanaerobacter acetigenes Strain F-12, Isolated from a Cattle Rumen.

Kang S, Denman S, Tahmasbi R, McSweeney C.

Microbiol Resour Announc. 2019 Jul 25;8(30). pii: e00634-19. doi: 10.1128/MRA.00634-19.

5.

Sample Processing Methods Impacts on Rumen Microbiome.

Martinez-Fernandez G, Denman SE, McSweeney CS.

Front Microbiol. 2019 Apr 30;10:861. doi: 10.3389/fmicb.2019.00861. eCollection 2019.

6.

Draft Genome Sequence and Annotation of Oribacterium sp. Strain C9, Isolated from a Cattle Rumen.

Kang S, Denman S, McSweeney C.

Microbiol Resour Announc. 2019 Mar 28;8(13). pii: e01562-18. doi: 10.1128/MRA.01562-18.

7.

Detecting changes in facial temperature induced by a sudden auditory stimulus based on deep learning-assisted face tracking.

Sonkusare S, Ahmedt-Aristizabal D, Aburn MJ, Nguyen VT, Pang T, Frydman S, Denman S, Fookes C, Breakspear M, Guo CC.

Sci Rep. 2019 Mar 18;9(1):4729. doi: 10.1038/s41598-019-41172-7.

8.

Automated detection of koalas using low-level aerial surveillance and machine learning.

Corcoran E, Denman S, Hanger J, Wilson B, Hamilton G.

Sci Rep. 2019 Mar 1;9(1):3208. doi: 10.1038/s41598-019-39917-5.

9.

Understanding Patients' Behavior: Vision-Based Analysis of Seizure Disorders.

Ahmedt-Aristizabal D, Denman S, Nguyen K, Sridharan S, Dionisio S, Fookes C.

IEEE J Biomed Health Inform. 2019 Nov;23(6):2583-2591. doi: 10.1109/JBHI.2019.2895855. Epub 2019 Jan 29.

PMID:
30714935
10.

Genomic analysis of bacteria in the Acute Oak Decline pathobiome.

Doonan J, Denman S, Pachebat JA, McDonald JE.

Microb Genom. 2019 Jan;5(1). doi: 10.1099/mgen.0.000240.

11.

Aberrant epileptic seizure identification: A computer vision perspective.

Ahmedt-Aristizabal D, Fookes C, Denman S, Nguyen K, Sridharan S, Dionisio S.

Seizure. 2019 Feb;65:65-71. doi: 10.1016/j.seizure.2018.12.017. Epub 2018 Dec 20.

PMID:
30616221
12.

Deep Motion Analysis for Epileptic Seizure Classification.

Ahmedt-Aristizabal D, Nguyen K, Denman S, Sridharan S, Dionisio S, Fookes C.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:3578-3581. doi: 10.1109/EMBC.2018.8513031.

PMID:
30441151
13.

Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats.

Abecia L, Martínez-Fernandez G, Waddams K, Martín-García AI, Pinloche E, Creevey CJ, Denman SE, Newbold CJ, Yáñez-Ruiz DR.

Front Microbiol. 2018 Oct 9;9:2227. doi: 10.3389/fmicb.2018.02227. eCollection 2018.

14.

Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future.

Huws SA, Creevey CJ, Oyama LB, Mizrahi I, Denman SE, Popova M, Muñoz-Tamayo R, Forano E, Waters SM, Hess M, Tapio I, Smidt H, Krizsan SJ, Yáñez-Ruiz DR, Belanche A, Guan L, Gruninger RJ, McAllister TA, Newbold CJ, Roehe R, Dewhurst RJ, Snelling TJ, Watson M, Suen G, Hart EH, Kingston-Smith AH, Scollan ND, do Prado RM, Pilau EJ, Mantovani HC, Attwood GT, Edwards JE, McEwan NR, Morrisson S, Mayorga OL, Elliott C, Morgavi DP.

Front Microbiol. 2018 Sep 25;9:2161. doi: 10.3389/fmicb.2018.02161. eCollection 2018. Review.

15.

Soft + Hardwired attention: An LSTM framework for human trajectory prediction and abnormal event detection.

Fernando T, Denman S, Sridharan S, Fookes C.

Neural Netw. 2018 Dec;108:466-478. doi: 10.1016/j.neunet.2018.09.002. Epub 2018 Sep 20.

PMID:
30317132
16.

Review: The application of omics to rumen microbiota function.

Denman SE, Morgavi DP, McSweeney CS.

Animal. 2018 Dec;12(s2):s233-s245. doi: 10.1017/S175173111800229X. Epub 2018 Sep 28. Review.

PMID:
30261940
17.

A hierarchical multimodal system for motion analysis in patients with epilepsy.

Ahmedt-Aristizabal D, Fookes C, Denman S, Nguyen K, Fernando T, Sridharan S, Dionisio S.

Epilepsy Behav. 2018 Oct;87:46-58. doi: 10.1016/j.yebeh.2018.07.028. Epub 2018 Aug 31.

PMID:
30173017
18.

3-NOP vs. Halogenated Compound: Methane Production, Ruminal Fermentation and Microbial Community Response in Forage Fed Cattle.

Martinez-Fernandez G, Duval S, Kindermann M, Schirra HJ, Denman SE, McSweeney CS.

Front Microbiol. 2018 Aug 7;9:1582. doi: 10.3389/fmicb.2018.01582. eCollection 2018.

19.

Selective Response to Omalizumab in a Patient With Concomitant ncMCAS and POTS: What Does it Teach us About the Underlying Disease?

Kacar M, Denman S, Savic S.

J Investig Allergol Clin Immunol. 2018 Aug;28(4):261-263. doi: 10.18176/jiaci.0251. No abstract available.

20.

Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size.

Hoedt EC, Parks DH, Volmer JG, Rosewarne CP, Denman SE, McSweeney CS, Muir JG, Gibson PR, Cuív PÓ, Hugenholtz P, Tyson GW, Morrison M.

ISME J. 2018 Dec;12(12):2942-2953. doi: 10.1038/s41396-018-0225-7. Epub 2018 Aug 1.

PMID:
30068938
21.

Deep facial analysis: A new phase I epilepsy evaluation using computer vision.

Ahmedt-Aristizabal D, Fookes C, Nguyen K, Denman S, Sridharan S, Dionisio S.

Epilepsy Behav. 2018 May;82:17-24. doi: 10.1016/j.yebeh.2018.02.010. Epub 2018 Mar 23.

PMID:
29574299
22.

Genetic Markers Are Associated with the Ruminal Microbiome and Metabolome in Grain and Sugar Challenged Dairy Heifers.

Golder HM, Thomson JM, Denman SE, McSweeney CS, Lean IJ.

Front Genet. 2018 Feb 27;9:62. doi: 10.3389/fgene.2018.00062. eCollection 2018.

23.

Fungal Planet description sheets: 625-715.

Crous PW, Wingfield MJ, Burgess TI, Carnegie AJ, Hardy GESJ, Smith D, Summerell BA, Cano-Lira JF, Guarro J, Houbraken J, Lombard L, Martín MP, Sandoval-Denis M, Alexandrova AV, Barnes CW, Baseia IG, Bezerra JDP, Guarnaccia V, May TW, Hernández-Restrepo M, Stchigel AM, Miller AN, Ordoñez ME, Abreu VP, Accioly T, Agnello C, Agustin Colmán A, Albuquerque CC, Alfredo DS, Alvarado P, Araújo-Magalhães GR, Arauzo S, Atkinson T, Barili A, Barreto RW, Bezerra JL, Cabral TS, Camello Rodríguez F, Cruz RHSF, Daniëls PP, da Silva BDB, de Almeida DAC, de Carvalho Júnior AA, Decock CA, Delgat L, Denman S, Dimitrov RA, Edwards J, Fedosova AG, Ferreira RJ, Firmino AL, Flores JA, García D, Gené J, Giraldo A, Góis JS, Gomes AAM, Gonçalves CM, Gouliamova DE, Groenewald M, Guéorguiev BV, Guevara-Suarez M, Gusmão LFP, Hosaka K, Hubka V, Huhndorf SM, Jadan M, Jurjević Ž, Kraak B, Kučera V, Kumar TKA, Kušan I, Lacerda SR, Lamlertthon S, Lisboa WS, Loizides M, Luangsa-Ard JJ, Lysková P, Mac Cormack WP, Macedo DM, Machado AR, Malysheva EF, Marinho P, Matočec N, Meijer M, Mešić A, Mongkolsamrit S, Moreira KA, Morozova OV, Nair KU, Nakamura N, Noisripoom W, Olariaga I, Oliveira RJV, Paiva LM, Pawar P, Pereira OL, Peterson SW, Prieto M, Rodríguez-Andrade E, Rojo De Blas C, Roy M, Santos ES, Sharma R, Silva GA, Souza-Motta CM, Takeuchi-Kaneko Y, Tanaka C, Thakur A, Smith MT, Tkalčec Z, Valenzuela-Lopez N, van der Kleij P, Verbeken A, Viana MG, Wang XW, Groenewald JZ.

Persoonia. 2017 Dec;39:270-467. doi: 10.3767/persoonia.2017.39.11. Epub 2017 Dec 20.

24.

Integrated multi-omic analysis of host-microbiota interactions in acute oak decline.

Broberg M, Doonan J, Mundt F, Denman S, McDonald JE.

Microbiome. 2018 Jan 30;6(1):21. doi: 10.1186/s40168-018-0408-5.

25.

Phloroglucinol Degradation in the Rumen Promotes the Capture of Excess Hydrogen Generated from Methanogenesis Inhibition.

Martinez-Fernandez G, Denman SE, Cheung J, McSweeney CS.

Front Microbiol. 2017 Oct 5;8:1871. doi: 10.3389/fmicb.2017.01871. eCollection 2017.

26.

Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline.

Denman S, Doonan J, Ransom-Jones E, Broberg M, Plummer S, Kirk S, Scarlett K, Griffiths AR, Kaczmarek M, Forster J, Peace A, Golyshin PN, Hassard F, Brown N, Kenny JG, McDonald JE.

ISME J. 2018 Feb;12(2):386-399. doi: 10.1038/ismej.2017.170. Epub 2017 Oct 13.

27.

Natural and artificial feeding management before weaning promote different rumen microbial colonization but not differences in gene expression levels at the rumen epithelium of newborn goats.

Abecia L, Jiménez E, Martínez-Fernandez G, Martín-García AI, Ramos-Morales E, Pinloche E, Denman SE, Newbold CJ, Yáñez-Ruiz DR.

PLoS One. 2017 Aug 16;12(8):e0182235. doi: 10.1371/journal.pone.0182235. eCollection 2017.

28.

Integrating regulatory surveys and citizen science to map outbreaks of forest diseases: acute oak decline in England and Wales.

Brown N, van den Bosch F, Parnell S, Denman S.

Proc Biol Sci. 2017 Jul 26;284(1859). pii: 20170547. doi: 10.1098/rspb.2017.0547.

29.

Fluoroacetate in plants - a review of its distribution, toxicity to livestock and microbial detoxification.

Leong LEX, Khan S, Davis CK, Denman SE, McSweeney CS.

J Anim Sci Biotechnol. 2017 Jun 1;8:55. doi: 10.1186/s40104-017-0180-6. eCollection 2017. Review.

30.

Taxonomy and identification of bacteria associated with acute oak decline.

Brady C, Arnold D, McDonald J, Denman S.

World J Microbiol Biotechnol. 2017 Jul;33(7):143. doi: 10.1007/s11274-017-2296-4. Epub 2017 Jun 16. Review.

31.

Multilocus sequence typing provides insights into the population structure and evolutionary potential of Brenneria goodwinii, associated with acute oak decline.

Kaczmarek M, Mullett MS, McDonald JE, Denman S.

PLoS One. 2017 Jun 1;12(6):e0178390. doi: 10.1371/journal.pone.0178390. eCollection 2017.

32.

Differences in Ureolytic Bacterial Composition between the Rumen Digesta and Rumen Wall Based on ureC Gene Classification.

Jin D, Zhao S, Zheng N, Bu D, Beckers Y, Denman SE, McSweeney CS, Wang J.

Front Microbiol. 2017 Mar 7;8:385. doi: 10.3389/fmicb.2017.00385. eCollection 2017.

33.

Variation in lung function as a marker of adherence to oral and inhaled medication in cystic fibrosis.

White H, Shaw N, Denman S, Pollard K, Wynne S, Peckham DG.

Eur Respir J. 2017 Mar 8;49(3). pii: 1600987. doi: 10.1183/13993003.00987-2016. Print 2017 Mar.

34.

Shotgun Metagenomic Sequencing Analysis of Soft-Rot Enterobacteriaceae in Polymicrobial Communities.

Doonan J, Denman S, McDonald JE, Golyshin PN.

Methods Mol Biol. 2017;1539:85-97.

PMID:
27900686
35.

Getting the most out of knowledge and innovation transfer agents in health care: a qualitative study.

Bullock A, Barnes E, Morris ZS, Fairbank J, de Pury J, Howell R, Denman S.

Southampton (UK): NIHR Journals Library; 2016 Nov.

36.

Home self-administration of omalizumab for chronic spontaneous urticaria.

Denman S, Ford K, Toolan J, Mistry A, Corps C, Wood P, Savic S.

Br J Dermatol. 2016 Dec;175(6):1405-1407. doi: 10.1111/bjd.15074. Epub 2016 Oct 27. No abstract available.

37.

Isolation studies reveal a shift in the cultivable microbiome of oak affected with Acute Oak Decline.

Denman S, Plummer S, Kirk S, Peace A, McDonald JE.

Syst Appl Microbiol. 2016 Oct;39(7):484-490. doi: 10.1016/j.syapm.2016.07.002. Epub 2016 Aug 6.

PMID:
27553488
38.

Methane Inhibition Alters the Microbial Community, Hydrogen Flow, and Fermentation Response in the Rumen of Cattle.

Martinez-Fernandez G, Denman SE, Yang C, Cheung J, Mitsumori M, McSweeney CS.

Front Microbiol. 2016 Jul 19;7:1122. doi: 10.3389/fmicb.2016.01122. eCollection 2016.

39.

High Fat Diets Induce Colonic Epithelial Cell Stress and Inflammation that is Reversed by IL-22.

Gulhane M, Murray L, Lourie R, Tong H, Sheng YH, Wang R, Kang A, Schreiber V, Wong KY, Magor G, Denman S, Begun J, Florin TH, Perkins A, Cuív PÓ, McGuckin MA, Hasnain SZ.

Sci Rep. 2016 Jun 28;6:28990. doi: 10.1038/srep28990.

40.

Methanogen Diversity in Indigenous and Introduced Ruminant Species on the Tibetan Plateau.

Huang XD, Martinez-Fernandez G, Padmanabha J, Long R, Denman SE, McSweeney CS.

Archaea. 2016 Apr 28;2016:5916067. doi: 10.1155/2016/5916067. eCollection 2016.

41.

Rapid identification of bacteria associated with Acute Oak Decline by high-resolution melt analysis.

Brady C, Allainguillaume J, Denman S, Arnold D.

Lett Appl Microbiol. 2016 Aug;63(2):89-95. doi: 10.1111/lam.12593.

42.

Differences down-under: alcohol-fueled methanogenesis by archaea present in Australian macropodids.

Hoedt EC, Cuív PÓ, Evans PN, Smith WJ, McSweeney CS, Denman SE, Morrison M.

ISME J. 2016 Oct;10(10):2376-88. doi: 10.1038/ismej.2016.41. Epub 2016 Mar 29.

43.

Developing an automated process of uploading immunoglobulin batch numbers to the UK National Immunoglobulin Database.

Denman S, Catt S, Hollingsworth R.

Eur J Hosp Pharm. 2016 Jan;23(1):54-56. doi: 10.1136/ejhpharm-2015-000654. Epub 2015 Mar 6.

44.

Responses of the two-spotted oak buprestid, Agrilus biguttatus (Coleoptera: Buprestidae), to host tree volatiles.

Vuts J, Woodcock CM, Sumner ME, Caulfield JC, Reed K, Inward DJ, Leather SR, Pickett JA, Birkett MA, Denman S.

Pest Manag Sci. 2016 Apr;72(4):845-51. doi: 10.1002/ps.4208. Epub 2016 Jan 25.

45.

Metagenomic analysis of the rumen microbial community following inhibition of methane formation by a halogenated methane analog.

Denman SE, Martinez Fernandez G, Shinkai T, Mitsumori M, McSweeney CS.

Front Microbiol. 2015 Oct 13;6:1087. doi: 10.3389/fmicb.2015.01087. eCollection 2015.

46.

Gibbsiella papilionis Kim et al. 2013 is a later heterotypic synonym of Gibbsiella dentisursi Saito et al. 2013.

Brady C, Irisawa T, Iino T, Ohkuma M, Arnold D, Denman S.

Int J Syst Evol Microbiol. 2015 Dec;65(12):4788-91. doi: 10.1099/ijsem.0.000649. Epub 2015 Sep 30.

PMID:
26432794
47.

Response of the rumen archaeal and bacterial populations to anti-methanogenic organosulphur compounds in continuous-culture fermenters.

Martínez-Fernández G, Abecia L, Martín-García AI, Ramos-Morales E, Denman SE, Newbold CJ, Molina-Alcaide E, Yáñez-Ruiz DR.

FEMS Microbiol Ecol. 2015 Aug;91(8):fiv079. doi: 10.1093/femsec/fiv079. Epub 2015 Jul 15.

PMID:
26183917
48.

Amino Acid and Peptide Utilization Profiles of the Fluoroacetate-Degrading Bacterium Synergistetes Strain MFA1 Under Varying Conditions.

Leong LE, Denman SE, Hugenholtz P, McSweeney CS.

Microb Ecol. 2016 Feb;71(2):494-504. doi: 10.1007/s00248-015-0641-4. Epub 2015 Jun 26.

PMID:
26111963
49.

Hydrogenotrophic culture enrichment reveals rumen Lachnospiraceae and Ruminococcaceae acetogens and hydrogen-responsive Bacteroidetes from pasture-fed cattle.

Gagen EJ, Padmanabha J, Denman SE, McSweeney CS.

FEMS Microbiol Lett. 2015 Jul;362(14). pii: fnv104. doi: 10.1093/femsle/fnv104. Epub 2015 Jun 24.

PMID:
26109360
50.

'Unblocking flow constraints' within a medical directorate at a large acute NHS trust.

Whale C, Ryalls L, Radford N, Sidle J, Jerram R, Denman S, Mott A.

Clin Med (Lond). 2015 Jun;15 Suppl 3:s32. doi: 10.7861/clinmedicine.15-3-s32. Epub 2015 May 29. No abstract available.

PMID:
26026027

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