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Items: 21

1.

High-resolution comparative analysis of great ape genomes.

Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJP, Dougherty ML, Munson KM, Hastie AR, Diekhans M, Hormozdiari F, Lorusso N, Hoekzema K, Qiu R, Clark K, Raja A, Welch AE, Sorensen M, Baker C, Fulton RS, Armstrong J, Graves-Lindsay TA, Denli AM, Hoppe ER, Hsieh P, Hill CM, Pang AWC, Lee J, Lam ET, Dutcher SK, Gage FH, Warren WC, Shendure J, Haussler D, Schneider VA, Cao H, Ventura M, Wilson RK, Paten B, Pollen A, Eichler EE.

Science. 2018 Jun 8;360(6393). pii: eaar6343. doi: 10.1126/science.aar6343.

2.

Examining non-LTR retrotransposons in the context of the evolving primate brain.

Linker SB, Marchetto MC, Narvaiza I, Denli AM, Gage FH.

BMC Biol. 2017 Aug 11;15(1):68. doi: 10.1186/s12915-017-0409-z. Review.

3.

Differentiation of Inflammation-Responsive Astrocytes from Glial Progenitors Generated from Human Induced Pluripotent Stem Cells.

Santos R, Vadodaria KC, Jaeger BN, Mei A, Lefcochilos-Fogelquist S, Mendes APD, Erikson G, Shokhirev M, Randolph-Moore L, Fredlender C, Dave S, Oefner R, Fitzpatrick C, Pena M, Barron JJ, Ku M, Denli AM, Kerman BE, Charnay P, Kelsoe JR, Marchetto MC, Gage FH.

Stem Cell Reports. 2017 Jun 6;8(6):1757-1769. doi: 10.1016/j.stemcr.2017.05.011.

4.

Functional Implications of miR-19 in the Migration of Newborn Neurons in the Adult Brain.

Han J, Kim HJ, Schafer ST, Paquola A, Clemenson GD, Toda T, Oh J, Pankonin AR, Lee BS, Johnston ST, Sarkar A, Denli AM, Gage FH.

Neuron. 2016 Jul 6;91(1):79-89. doi: 10.1016/j.neuron.2016.05.034.

5.

REST Regulates Non-Cell-Autonomous Neuronal Differentiation and Maturation of Neural Progenitor Cells via Secretogranin II.

Kim HJ, Denli AM, Wright R, Baul TD, Clemenson GD, Morcos AS, Zhao C, Schafer ST, Gage FH, Kagalwala MN.

J Neurosci. 2015 Nov 4;35(44):14872-84. doi: 10.1523/JNEUROSCI.4286-14.2015.

6.

Primate-specific ORF0 contributes to retrotransposon-mediated diversity.

Denli AM, Narvaiza I, Kerman BE, Pena M, Benner C, Marchetto MC, Diedrich JK, Aslanian A, Ma J, Moresco JJ, Moore L, Hunter T, Saghatelian A, Gage FH.

Cell. 2015 Oct 22;163(3):583-93. doi: 10.1016/j.cell.2015.09.025. Epub 2015 Oct 22.

7.

Differential L1 regulation in pluripotent stem cells of humans and apes.

Marchetto MCN, Narvaiza I, Denli AM, Benner C, Lazzarini TA, Nathanson JL, Paquola ACM, Desai KN, Herai RH, Weitzman MD, Yeo GW, Muotri AR, Gage FH.

Nature. 2013 Nov 28;503(7477):525-529. doi: 10.1038/nature12686. Epub 2013 Oct 23.

8.

Conversion of human fibroblasts to angioblast-like progenitor cells.

Kurian L, Sancho-Martinez I, Nivet E, Aguirre A, Moon K, Pendaries C, Volle-Challier C, Bono F, Herbert JM, Pulecio J, Xia Y, Li M, Montserrat N, Ruiz S, Dubova I, Rodriguez C, Denli AM, Boscolo FS, Thiagarajan RD, Gage FH, Loring JF, Laurent LC, Izpisua Belmonte JC.

Nat Methods. 2013 Jan;10(1):77-83. doi: 10.1038/nmeth.2255. Epub 2012 Dec 2.

9.

The enemy within: intronic miR-26b represses its host gene, ctdsp2, to regulate neurogenesis.

Han J, Denli AM, Gage FH.

Genes Dev. 2012 Jan 1;26(1):6-10. doi: 10.1101/gad.184416.111.

10.

SRY-box-containing gene 2 regulation of nuclear receptor tailless (Tlx) transcription in adult neural stem cells.

Shimozaki K, Zhang CL, Suh H, Denli AM, Evans RM, Gage FH.

J Biol Chem. 2012 Feb 17;287(8):5969-78. doi: 10.1074/jbc.M111.290403. Epub 2011 Dec 22.

11.

miR-9 and TLX: chasing tails in neural stem cells.

Denli AM, Cao X, Gage FH.

Nat Struct Mol Biol. 2009 Apr;16(4):346-7. doi: 10.1038/nsmb0409-346. No abstract available.

PMID:
19343066
12.

Comparative analysis of argonaute-dependent small RNA pathways in Drosophila.

Zhou R, Hotta I, Denli AM, Hong P, Perrimon N, Hannon GJ.

Mol Cell. 2008 Nov 21;32(4):592-9. doi: 10.1016/j.molcel.2008.10.018.

13.

A novel model for an older remodeler: the BAF swap in neurogenesis.

Aigner S, Denli AM, Gage FH.

Neuron. 2007 Jul 19;55(2):171-3.

14.

Retraction: RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription.

Schramke V, Sheedy DM, Denli AM, Bonila C, Ekwall K, Hannon GJ, Allshire RC.

Nature. 2005 Oct 13;437(7061):1057. No abstract available.

PMID:
16222304
15.

Biochemical specialization within Arabidopsis RNA silencing pathways.

Qi Y, Denli AM, Hannon GJ.

Mol Cell. 2005 Aug 5;19(3):421-8.

16.

RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription.

Schramke V, Sheedy DM, Denli AM, Bonila C, Ekwall K, Hannon GJ, Allshire RC.

Nature. 2005 Jun 30;435(7046):1275-9. Epub 2005 Jun 19. Retraction in: Schramke V, Sheedy DM, Denli AM, Bonila C, Ekwall K, Hannon GJ, Allshire RC. Nature. 2005 Oct 13;437(7061):1057.

17.

Normal microRNA maturation and germ-line stem cell maintenance requires Loquacious, a double-stranded RNA-binding domain protein.

Förstemann K, Tomari Y, Du T, Vagin VV, Denli AM, Bratu DP, Klattenhoff C, Theurkauf WE, Zamore PD.

PLoS Biol. 2005 Jul;3(7):e236. Epub 2005 May 24.

18.

Processing of primary microRNAs by the Microprocessor complex.

Denli AM, Tops BB, Plasterk RH, Ketting RF, Hannon GJ.

Nature. 2004 Nov 11;432(7014):231-5. Epub 2004 Nov 7.

PMID:
15531879
19.

A micrococcal nuclease homologue in RNAi effector complexes.

Caudy AA, Ketting RF, Hammond SM, Denli AM, Bathoorn AM, Tops BB, Silva JM, Myers MM, Hannon GJ, Plasterk RH.

Nature. 2003 Sep 25;425(6956):411-4.

20.

RNAi: an ever-growing puzzle.

Denli AM, Hannon GJ.

Trends Biochem Sci. 2003 Apr;28(4):196-201. Review.

PMID:
12713903
21.

The rest is silence.

Bernstein E, Denli AM, Hannon GJ.

RNA. 2001 Nov;7(11):1509-21. Review.

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