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Items: 12

1.

Mll2 is required for H3K4 trimethylation on bivalent promoters in embryonic stem cells, whereas Mll1 is redundant.

Denissov S, Hofemeister H, Marks H, Kranz A, Ciotta G, Singh S, Anastassiadis K, Stunnenberg HG, Stewart AF.

Development. 2014 Feb;141(3):526-37. doi: 10.1242/dev.102681. Epub 2014 Jan 14.

2.

The transcriptional and epigenomic foundations of ground state pluripotency.

Marks H, Kalkan T, Menafra R, Denissov S, Jones K, Hofemeister H, Nichols J, Kranz A, Stewart AF, Smith A, Stunnenberg HG.

Cell. 2012 Apr 27;149(3):590-604. doi: 10.1016/j.cell.2012.03.026.

3.

A model for the topology of active ribosomal RNA genes.

Denissov S, Lessard F, Mayer C, Stefanovsky V, van Driel M, Grummt I, Moss T, Stunnenberg HG.

EMBO Rep. 2011 Mar;12(3):231-7. doi: 10.1038/embor.2011.8. Epub 2011 Feb 18.

4.

Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.

Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M.

Cell. 2010 Sep 17;142(6):967-80. doi: 10.1016/j.cell.2010.08.020.

5.

High-resolution analysis of epigenetic changes associated with X inactivation.

Marks H, Chow JC, Denissov S, Françoijs KJ, Brockdorff N, Heard E, Stunnenberg HG.

Genome Res. 2009 Aug;19(8):1361-73. doi: 10.1101/gr.092643.109. Epub 2009 Jul 6.

6.

Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis.

Nielsen R, Pedersen TA, Hagenbeek D, Moulos P, Siersbaek R, Megens E, Denissov S, Børgesen M, Francoijs KJ, Mandrup S, Stunnenberg HG.

Genes Dev. 2008 Nov 1;22(21):2953-67. doi: 10.1101/gad.501108.

7.

Characterization of genome-wide p53-binding sites upon stress response.

Smeenk L, van Heeringen SJ, Koeppel M, van Driel MA, Bartels SJ, Akkers RC, Denissov S, Stunnenberg HG, Lohrum M.

Nucleic Acids Res. 2008 Jun;36(11):3639-54. doi: 10.1093/nar/gkn232. Epub 2008 May 12.

8.

Genome-wide pattern of TCF7L2/TCF4 chromatin occupancy in colorectal cancer cells.

Hatzis P, van der Flier LG, van Driel MA, Guryev V, Nielsen F, Denissov S, Nijman IJ, Koster J, Santo EE, Welboren W, Versteeg R, Cuppen E, van de Wetering M, Clevers H, Stunnenberg HG.

Mol Cell Biol. 2008 Apr;28(8):2732-44. doi: 10.1128/MCB.02175-07. Epub 2008 Feb 11.

9.

Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

Vermeulen M, Mulder KW, Denissov S, Pijnappel WW, van Schaik FM, Varier RA, Baltissen MP, Stunnenberg HG, Mann M, Timmers HT.

Cell. 2007 Oct 5;131(1):58-69. Epub 2007 Sep 20.

10.

Identification of novel functional TBP-binding sites and general factor repertoires.

Denissov S, van Driel M, Voit R, Hekkelman M, Hulsen T, Hernandez N, Grummt I, Wehrens R, Stunnenberg H.

EMBO J. 2007 Feb 21;26(4):944-54. Epub 2007 Feb 1.

11.

Targeted discovery tools: proteomics and chromatin immunoprecipitation-on-chip.

Le Guezennec X, Brinkman AB, Vermeulen M, Denissov SG, Gazziola C, Lohrum ME, Stunnenberg HG.

BJU Int. 2005 Dec;96 Suppl 2:16-22. Review.

12.

E2F transcriptional repressor complexes are critical downstream targets of p19(ARF)/p53-induced proliferative arrest.

Rowland BD, Denissov SG, Douma S, Stunnenberg HG, Bernards R, Peeper DS.

Cancer Cell. 2002 Jul;2(1):55-65.

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