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Items: 22

1.

Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression.

Mars RA, Nicolas P, Denham EL, van Dijl JM.

Microbiol Mol Biol Rev. 2016 Oct 26;80(4):1029-1057. Print 2016 Dec. Review.

2.

Homogeneity and heterogeneity in amylase production by Bacillus subtilis under different growth conditions.

Ploss TN, Reilman E, Monteferrante CG, Denham EL, Piersma S, Lingner A, Vehmaanperä J, Lorenz P, van Dijl JM.

Microb Cell Fact. 2016 Mar 29;15:57. doi: 10.1186/s12934-016-0455-1.

3.

The phosphoenolpyruvate:sugar phosphotransferase system is involved in sensitivity to the glucosylated bacteriocin sublancin.

Garcia De Gonzalo CV, Denham EL, Mars RA, Stülke J, van der Donk WA, van Dijl JM.

Antimicrob Agents Chemother. 2015 Nov;59(11):6844-54. doi: 10.1128/AAC.01519-15. Epub 2015 Aug 17.

4.

The reduction in small ribosomal subunit abundance in ethanol-stressed cells of Bacillus subtilis is mediated by a SigB-dependent antisense RNA.

Mars RA, Mendonça K, Denham EL, van Dijl JM.

Biochim Biophys Acta. 2015 Oct;1853(10 Pt A):2553-9. doi: 10.1016/j.bbamcr.2015.06.009. Epub 2015 Jun 24.

5.

Small regulatory RNA-induced growth rate heterogeneity of Bacillus subtilis.

Mars RA, Nicolas P, Ciccolini M, Reilman E, Reder A, Schaffer M, Mäder U, Völker U, van Dijl JM, Denham EL.

PLoS Genet. 2015 Mar 19;11(3):e1005046. doi: 10.1371/journal.pgen.1005046. eCollection 2015 Mar.

6.

The multidrug ABC transporter BmrC/BmrD of Bacillus subtilis is regulated via a ribosome-mediated transcriptional attenuation mechanism.

Reilman E, Mars RA, van Dijl JM, Denham EL.

Nucleic Acids Res. 2014 Oct;42(18):11393-407. doi: 10.1093/nar/gku832. Epub 2014 Sep 12.

7.

TLM-Quant: an open-source pipeline for visualization and quantification of gene expression heterogeneity in growing microbial cells.

Piersma S, Denham EL, Drulhe S, Tonk RH, Schwikowski B, van Dijl JM.

PLoS One. 2013 Jul 17;8(7):e68696. doi: 10.1371/journal.pone.0068696. Print 2013.

8.

Phenol-soluble modulins, hellhounds from the staphylococcal virulence-factor pandemonium.

Tsompanidou E, Denham EL, van Dijl JM.

Trends Microbiol. 2013 Jul;21(7):313-5. doi: 10.1016/j.tim.2013.04.007. Epub 2013 May 14.

PMID:
23684152
9.

Distinct roles of phenol-soluble modulins in spreading of Staphylococcus aureus on wet surfaces.

Tsompanidou E, Denham EL, Becher D, de Jong A, Buist G, van Oosten M, Manson WL, Back JW, van Dijl JM, Dreisbach A.

Appl Environ Microbiol. 2013 Feb;79(3):886-95. doi: 10.1128/AEM.03157-12. Epub 2012 Nov 26.

10.

Definition of the σ(W) regulon of Bacillus subtilis in the absence of stress.

Zweers JC, Nicolas P, Wiegert T, van Dijl JM, Denham EL.

PLoS One. 2012;7(11):e48471. doi: 10.1371/journal.pone.0048471. Epub 2012 Nov 14.

11.

The sortase A substrates FnbpA, FnbpB, ClfA and ClfB antagonize colony spreading of Staphylococcus aureus.

Tsompanidou E, Denham EL, Sibbald MJ, Yang XM, Seinen J, Friedrich AW, Buist G, van Dijl JM.

PLoS One. 2012;7(9):e44646. doi: 10.1371/journal.pone.0044646. Epub 2012 Sep 7.

12.

Is proteomics a reliable tool to probe the oxidative folding of bacterial membrane proteins?

Goosens VJ, Mars RA, Akeroyd M, Vente A, Dreisbach A, Denham EL, Kouwen TR, van Rij T, Olsthoorn M, van Dijl JM.

Antioxid Redox Signal. 2013 Apr 1;18(10):1159-64. doi: 10.1089/ars.2012.4664. Epub 2012 Jun 11.

PMID:
22540663
13.

Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.

Nicolas P, Mäder U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, Bidnenko E, Marchadier E, Hoebeke M, Aymerich S, Becher D, Bisicchia P, Botella E, Delumeau O, Doherty G, Denham EL, Fogg MJ, Fromion V, Goelzer A, Hansen A, Härtig E, Harwood CR, Homuth G, Jarmer H, Jules M, Klipp E, Le Chat L, Lecointe F, Lewis P, Liebermeister W, March A, Mars RA, Nannapaneni P, Noone D, Pohl S, Rinn B, Rügheimer F, Sappa PK, Samson F, Schaffer M, Schwikowski B, Steil L, Stülke J, Wiegert T, Devine KM, Wilkinson AJ, van Dijl JM, Hecker M, Völker U, Bessières P, Noirot P.

Science. 2012 Mar 2;335(6072):1103-6. doi: 10.1126/science.1206848.

14.

Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.

Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Le Chat L, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn B, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U.

Science. 2012 Mar 2;335(6072):1099-103. doi: 10.1126/science.1206871.

15.

Environmental salinity determines the specificity and need for Tat-dependent secretion of the YwbN protein in Bacillus subtilis.

van der Ploeg R, Mäder U, Homuth G, Schaffer M, Denham EL, Monteferrante CG, Miethke M, Marahiel MA, Harwood CR, Winter T, Hecker M, Antelmann H, van Dijl JM.

PLoS One. 2011 Mar 30;6(3):e18140. doi: 10.1371/journal.pone.0018140.

16.

Requirement of the agr locus for colony spreading of Staphylococcus aureus.

Tsompanidou E, Sibbald MJ, Chlebowicz MA, Dreisbach A, Back JW, van Dijl JM, Buist G, Denham EL.

J Bacteriol. 2011 Mar;193(5):1267-72. doi: 10.1128/JB.01276-10. Epub 2010 Dec 17.

17.

pBaSysBioII: an integrative plasmid generating gfp transcriptional fusions for high-throughput analysis of gene expression in Bacillus subtilis.

Botella E, Fogg M, Jules M, Piersma S, Doherty G, Hansen A, Denham EL, Le Chat L, Veiga P, Bailey K, Lewis PJ, van Dijl JM, Aymerich S, Wilkinson AJ, Devine KM.

Microbiology. 2010 Jun;156(Pt 6):1600-8. doi: 10.1099/mic.0.035758-0. Epub 2010 Feb 11.

PMID:
20150235
18.

Contributions of the pre- and pro-regions of a Staphylococcus hyicus lipase to secretion of a heterologous protein by Bacillus subtilis.

Kouwen TR, Nielsen AK, Denham EL, Dubois JY, Dorenbos R, Rasmussen MD, Quax WJ, Freudl R, van Dijl JM.

Appl Environ Microbiol. 2010 Feb;76(3):659-69. doi: 10.1128/AEM.01671-09. Epub 2009 Nov 30.

19.

The large mechanosensitive channel MscL determines bacterial susceptibility to the bacteriocin sublancin 168.

Kouwen TR, Trip EN, Denham EL, Sibbald MJ, Dubois JY, van Dijl JM.

Antimicrob Agents Chemother. 2009 Nov;53(11):4702-11. doi: 10.1128/AAC.00439-09. Epub 2009 Sep 8.

20.

MscL of Bacillus subtilis prevents selective release of cytoplasmic proteins in a hypotonic environment.

Kouwen TR, Antelmann H, van der Ploeg R, Denham EL, Hecker M, van Dijl JM.

Proteomics. 2009 Feb;9(4):1033-43. doi: 10.1002/pmic.200800483.

PMID:
19160392
21.

In the absence of Lgt, lipoproteins are shed from Streptococcus uberis independently of Lsp.

Denham EL, Ward PN, Leigh JA.

Microbiology. 2009 Jan;155(Pt 1):134-41. doi: 10.1099/mic.0.022061-0.

PMID:
19118354
22.

Lipoprotein signal peptides are processed by Lsp and Eep of Streptococcus uberis.

Denham EL, Ward PN, Leigh JA.

J Bacteriol. 2008 Jul;190(13):4641-7. doi: 10.1128/JB.00287-08. Epub 2008 May 9.

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