Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 40

1.

The Receptor-like Pseudokinase GHR1 Is Required for Stomatal Closure.

Sierla M, Hõrak H, Overmyer K, Waszczak C, Yarmolinsky D, Maierhofer T, Vainonen JP, Salojärvi J, Denessiouk K, Laanemets K, Tõldsepp K, Vahisalu T, Gauthier A, Puukko T, Paulin L, Auvinen P, Geiger D, Hedrich R, Kollist H, Kangasjärvi J.

Plant Cell. 2018 Nov;30(11):2813-2837. doi: 10.1105/tpc.18.00441. Epub 2018 Oct 25.

2.

Distinctive structural motifs co-ordinate the catalytic nucleophile and the residues of the oxyanion hole in the alpha/beta-hydrolase fold enzymes.

Dimitriou PS, Denesyuk AI, Nakayama T, Johnson MS, Denessiouk K.

Protein Sci. 2019 Feb;28(2):344-364. doi: 10.1002/pro.3527. Epub 2018 Nov 12.

PMID:
30311984
3.

Comprehensive analysis of the roles of 'black' and 'gray' clusters in structure and function of rat β-parvalbumin.

Permyakov SE, Vologzhannikova AA, Khorn PA, Shevelyova MP, Kazakov AS, Emelyanenko VI, Denesyuk AI, Denessiouk K, Uversky VN, Permyakov EA.

Cell Calcium. 2018 Nov;75:64-78. doi: 10.1016/j.ceca.2018.08.005. Epub 2018 Aug 27.

PMID:
30176502
4.

On the relationship between the conserved 'black' and 'gray' structural clusters and intrinsic disorder in parvalbumins.

Deryusheva EI, Denesyuk AI, Denessiouk K, Uversky VN, Permyakov SE, Permyakov EA.

Int J Biol Macromol. 2018 Dec;120(Pt A):1055-1062. doi: 10.1016/j.ijbiomac.2018.08.183. Epub 2018 Aug 30.

PMID:
30172820
5.

Physical interactions among flavonoid enzymes in snapdragon and torenia reveal the diversity in the flavonoid metabolon organization of different plant species.

Fujino N, Tenma N, Waki T, Ito K, Komatsuzaki Y, Sugiyama K, Yamazaki T, Yoshida S, Hatayama M, Yamashita S, Tanaka Y, Motohashi R, Denessiouk K, Takahashi S, Nakayama T.

Plant J. 2018 Apr;94(2):372-392. doi: 10.1111/tpj.13864. Epub 2018 Mar 23.

PMID:
29421843
6.

Top surface blade residues and the central channel water molecules are conserved in every repeat of the integrin-like β-propeller structures.

Denesyuk A, Denessiouk K, Johnson MS.

J Struct Biol. 2018 Feb;201(2):155-161. doi: 10.1016/j.jsb.2017.10.005. Epub 2017 Oct 17.

PMID:
29054403
7.

Building kit for metal cation binding sites in proteins.

Denesyuk AI, Permyakov SE, Johnson MS, Permyakov EA, Denessiouk K.

Biochem Biophys Res Commun. 2017 Dec 9;494(1-2):311-317. doi: 10.1016/j.bbrc.2017.10.034. Epub 2017 Oct 7.

PMID:
29017922
8.

Alpha/beta-hydrolases: A unique structural motif coordinates catalytic acid residue in 40 protein fold families.

Dimitriou PS, Denesyuk A, Takahashi S, Yamashita S, Johnson MS, Nakayama T, Denessiouk K.

Proteins. 2017 Oct;85(10):1845-1855. doi: 10.1002/prot.25338. Epub 2017 Jul 3.

PMID:
28643343
9.

Erratum: Selective integrin endocytosis is driven by interactions between the integrin α-chain and AP2.

De Franceschi N, Arjonen A, Elkhatib N, Denessiouk K, Wrobel AG, Wilson TA, Pouwels J, Montagnac G, Owen DJ, Ivaska J.

Nat Struct Mol Biol. 2017 Feb 6;24(2):194. doi: 10.1038/nsmb0217-194b. No abstract available.

PMID:
28169997
10.

Novel calcium recognition constructions in proteins: Calcium blade and EF-hand zone.

Denesyuk AI, Permyakov SE, Johnson MS, Permyakov EA, Denessiouk K.

Biochem Biophys Res Commun. 2017 Feb 12;483(3):958-963. doi: 10.1016/j.bbrc.2017.01.040. Epub 2017 Jan 12.

PMID:
28089868
11.

Selective integrin endocytosis is driven by interactions between the integrin α-chain and AP2.

De Franceschi N, Arjonen A, Elkhatib N, Denessiouk K, Wrobel AG, Wilson TA, Pouwels J, Montagnac G, Owen DJ, Ivaska J.

Nat Struct Mol Biol. 2016 Feb;23(2):172-9. doi: 10.1038/nsmb.3161. Epub 2016 Jan 18. Erratum in: Nat Struct Mol Biol. 2017 Feb 6;24(2):194.

12.

Interleukin-11 binds specific EF-hand proteins via their conserved structural motifs.

Kazakov AS, Sokolov AS, Vologzhannikova AA, Permyakova ME, Khorn PA, Ismailov RG, Denessiouk KA, Denesyuk AI, Rastrygina VA, Baksheeva VE, Zernii EY, Zinchenko DV, Glazatov VV, Uversky VN, Mirzabekov TA, Permyakov EA, Permyakov SE.

J Biomol Struct Dyn. 2017 Jan;35(1):78-91. doi: 10.1080/07391102.2015.1132392. Epub 2016 Mar 8.

PMID:
26726132
13.

Identification of protein-protein interactions of isoflavonoid biosynthetic enzymes with 2-hydroxyisoflavanone synthase in soybean (Glycine max (L.) Merr.).

Waki T, Yoo D, Fujino N, Mameda R, Denessiouk K, Yamashita S, Motohashi R, Akashi T, Aoki T, Ayabe S, Takahashi S, Nakayama T.

Biochem Biophys Res Commun. 2016 Jan 15;469(3):546-51. doi: 10.1016/j.bbrc.2015.12.038. Epub 2015 Dec 13.

PMID:
26694697
14.

Activating ERBB4 mutations in non-small cell lung cancer.

Kurppa KJ, Denessiouk K, Johnson MS, Elenius K.

Oncogene. 2016 Mar 10;35(10):1283-91. doi: 10.1038/onc.2015.185. Epub 2015 Jun 8.

PMID:
26050618
15.

The L1TD1 protein interactome reveals the importance of post-transcriptional regulation in human pluripotency.

Emani MR, Närvä E, Stubb A, Chakroborty D, Viitala M, Rokka A, Rahkonen N, Moulder R, Denessiouk K, Trokovic R, Lund R, Elo LL, Lahesmaa R.

Stem Cell Reports. 2015 Mar 10;4(3):519-28. doi: 10.1016/j.stemcr.2015.01.014. Epub 2015 Feb 19.

16.

Early chordate origin of the vertebrate integrin αI domains.

Chouhan BS, Käpylä J, Denessiouk K, Denesyuk A, Heino J, Johnson MS.

PLoS One. 2014 Nov 19;9(11):e112064. doi: 10.1371/journal.pone.0112064. eCollection 2014.

17.

Two structural motifs within canonical EF-hand calcium-binding domains identify five different classes of calcium buffers and sensors.

Denessiouk K, Permyakov S, Denesyuk A, Permyakov E, Johnson MS.

PLoS One. 2014 Oct 14;9(10):e109287. doi: 10.1371/journal.pone.0109287. eCollection 2014.

18.

Effects of light and the regulatory B-subunit composition of protein phosphatase 2A on the susceptibility of Arabidopsis thaliana to aphid (Myzus persicae) infestation.

Rasool B, Karpinska B, Konert G, Durian G, Denessiouk K, Kangasjärvi S, Foyer CH.

Front Plant Sci. 2014 Aug 21;5:405. doi: 10.3389/fpls.2014.00405. eCollection 2014.

19.

Citrullination of collagen II affects integrin-mediated cell adhesion in a receptor-specific manner.

Sipilä K, Haag S, Denessiouk K, Käpylä J, Peters EC, Denesyuk A, Hansen U, Konttinen Y, Johnson MS, Holmdahl R, Heino J.

FASEB J. 2014 Aug;28(8):3758-68. doi: 10.1096/fj.13-247767. Epub 2014 May 13.

PMID:
24823363
20.

RNA-binding protein L1TD1 interacts with LIN28 via RNA and is required for human embryonic stem cell self-renewal and cancer cell proliferation.

Närvä E, Rahkonen N, Emani MR, Lund R, Pursiheimo JP, Nästi J, Autio R, Rasool O, Denessiouk K, Lähdesmäki H, Rao A, Lahesmaa R.

Stem Cells. 2012 Mar;30(3):452-60. doi: 10.1002/stem.1013.

21.

Conservation of the human integrin-type beta-propeller domain in bacteria.

Chouhan B, Denesyuk A, Heino J, Johnson MS, Denessiouk K.

PLoS One. 2011;6(10):e25069. doi: 10.1371/journal.pone.0025069. Epub 2011 Oct 13.

22.

Integrins during evolution: evolutionary trees and model organisms.

Johnson MS, Lu N, Denessiouk K, Heino J, Gullberg D.

Biochim Biophys Acta. 2009 Apr;1788(4):779-89. doi: 10.1016/j.bbamem.2008.12.013. Epub 2009 Jan 7. Review.

23.

Coordination of Na(+) by monoamine ligands in dopamine, norepinephrine, and serotonin transporters.

Xhaard H, Backström V, Denessiouk K, Johnson MS.

J Chem Inf Model. 2008 Jul;48(7):1423-37. doi: 10.1021/ci700255d. Epub 2008 Jun 11.

PMID:
18543980
24.

Negative modulation of signal transduction via interleukin splice variation.

Denessiouk KA, Denesyuk AI, Johnson MS.

Proteins. 2008 May 1;71(2):751-70.

PMID:
17979192
25.

Inhibition of DNA binding by differential sumoylation of heat shock factors.

Anckar J, Hietakangas V, Denessiouk K, Thiele DJ, Johnson MS, Sistonen L.

Mol Cell Biol. 2006 Feb;26(3):955-64.

26.

Rapid turnover of c-FLIPshort is determined by its unique C-terminal tail.

Poukkula M, Kaunisto A, Hietakangas V, Denessiouk K, Katajamäki T, Johnson MS, Sistonen L, Eriksson JE.

J Biol Chem. 2005 Jul 22;280(29):27345-55. Epub 2005 May 10.

27.

Novel CalphaNN structural motif for protein recognition of phosphate ions.

Denessiouk KA, Johnson MS, Denesyuk AI.

J Mol Biol. 2005 Jan 21;345(3):611-29.

PMID:
15581902
28.

Identification and characterization of a novel luciferase-like protein in the human female reproductive tract.

Khorram O, Garthwaite M, Johnson MS, Denessiouk KA, Han G, Guo T, McPhaul LW, Magee TR, Westerman B, Golos TG.

J Clin Endocrinol Metab. 2004 Nov;89(11):5837-46.

PMID:
15531550
30.

Phosphate group binding "cup" of PLP-dependent and non-PLP-dependent enzymes: leitmotif and variations.

Denesyuk AI, Denessiouk KA, Korpela T, Johnson MS.

Biochim Biophys Acta. 2003 Apr 11;1647(1-2):234-8.

PMID:
12686139
31.

Functional attributes of the phosphate group binding cup of pyridoxal phosphate-dependent enzymes.

Denesyuk AI, Denessiouk KA, Korpela T, Johnson MS.

J Mol Biol. 2002 Feb 8;316(1):155-72.

PMID:
11829510
32.

A fragment library based on Gaussian mixtures predicting favorable molecular interactions.

Rantanen VV, Denessiouk KA, Gyllenberg M, Koski T, Johnson MS.

J Mol Biol. 2001 Oct 12;313(1):197-214.

PMID:
11601856
33.

Adenine recognition: a motif present in ATP-, CoA-, NAD-, NADP-, and FAD-dependent proteins.

Denessiouk KA, Rantanen VV, Johnson MS.

Proteins. 2001 Aug 15;44(3):282-91.

PMID:
11455601
34.
35.

Common structural elements in the architecture of the cofactor-binding domains in unrelated families of pyridoxal phosphate-dependent enzymes.

Denessiouk KA, Denesyuk AI, Lehtonen JV, Korpela T, Johnson MS.

Proteins. 1999 May 1;35(2):250-61.

PMID:
10223296
36.
37.

Finding local structural similarities among families of unrelated protein structures: a generic non-linear alignment algorithm.

Lehtonen JV, Denessiouk K, May AC, Johnson MS.

Proteins. 1999 Feb 15;34(3):341-55.

PMID:
10024021
38.

Analogous conformations of both binding and effector regions in cyclosporin A, FK506 and rapamycin.

Denesyuk AI, Denessiouk KA, Zav'yalov VP, Lundell J, Korpela T.

Comput Chem. 1998 Jun 20;22(4):339-44.

PMID:
9680690
39.
40.

Molecular models of two competitive inhibitors, IL-2delta2 and IL-2delta3, generated by alternative splicing of human interleukin-2.

Denesyuk AI, Zav'yalov VP, Denessiouk KA, Korpela T.

Immunol Lett. 1998 Feb;60(2-3):61-6.

PMID:
9557946

Supplemental Content

Loading ...
Support Center