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Items: 1 to 50 of 64

1.

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.

Nishiyama T, Sakayama H, de Vries J, Buschmann H, Saint-Marcoux D, Ullrich KK, Haas FB, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson PKI, Janitza P, Kern R, Heyl A, Rümpler F, Villalobos LIAC, Clay JM, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington AJ, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan GV, Van Nieuwerburgh F, Deforce D, Chang C, Karol KG, Hedrich R, Ulvskov P, Glöckner G, Delwiche CF, Petrášek J, Van de Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theißen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing SA.

Cell. 2018 Jul 12;174(2):448-464.e24. doi: 10.1016/j.cell.2018.06.033.

2.

Microbial Diversity in the Eukaryotic SAR Clade: Illuminating the Darkness Between Morphology and Molecular Data.

Grattepanche JD, Walker LM, Ott BM, Paim Pinto DL, Delwiche CF, Lane CE, Katz LA.

Bioessays. 2018 Apr;40(4):e1700198. doi: 10.1002/bies.201700198. Epub 2018 Mar 7.

PMID:
29512175
3.

Land Plant Model Systems Branch Out.

Delwiche CF, Goodman CA, Chang C.

Cell. 2017 Oct 5;171(2):265-266. doi: 10.1016/j.cell.2017.09.036.

4.

Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics.

Janouškovec J, Gavelis GS, Burki F, Dinh D, Bachvaroff TR, Gornik SG, Bright KJ, Imanian B, Strom SL, Delwiche CF, Waller RF, Fensome RA, Leander BS, Rohwer FL, Saldarriaga JF.

Proc Natl Acad Sci U S A. 2017 Jan 10;114(2):E171-E180. doi: 10.1073/pnas.1614842114. Epub 2016 Dec 27.

5.

Transcriptome Profiling of the Green Alga Spirogyra pratensis (Charophyta) Suggests an Ancestral Role for Ethylene in Cell Wall Metabolism, Photosynthesis, and Abiotic Stress Responses.

Van de Poel B, Cooper ED, Van Der Straeten D, Chang C, Delwiche CF.

Plant Physiol. 2016 Sep;172(1):533-45. doi: 10.1104/pp.16.00299. Epub 2016 Aug 3.

6.

The Evolutionary Origin of a Terrestrial Flora.

Delwiche CF, Cooper ED.

Curr Biol. 2015 Oct 5;25(19):R899-910. doi: 10.1016/j.cub.2015.08.029. Review.

7.

Erratum to: Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.

Gibbons TR, Mount SM, Cooper ED, Delwiche CF.

BMC Bioinformatics. 2015 Aug 28;16:274. doi: 10.1186/s12859-015-0690-1. No abstract available.

8.

Complex Ancestries of Isoprenoid Synthesis in Dinoflagellates.

Bentlage B, Rogers TS, Bachvaroff TR, Delwiche CF.

J Eukaryot Microbiol. 2016 Jan-Feb;63(1):123-37. doi: 10.1111/jeu.12261. Epub 2015 Sep 12.

9.

Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.

Gibbons TR, Mount SM, Cooper ED, Delwiche CF.

BMC Bioinformatics. 2015 Jul 10;16:218. doi: 10.1186/s12859-015-0625-x. Erratum in: BMC Bioinformatics. 2015;16:274.

10.

Dinoflagellate Gene Structure and Intron Splice Sites in a Genomic Tandem Array.

Mendez GS, Delwiche CF, Apt KE, Lippmeier JC.

J Eukaryot Microbiol. 2015 Sep-Oct;62(5):679-87. doi: 10.1111/jeu.12230. Epub 2015 Jun 8.

11.

Phylogenomic analysis of Emiliania huxleyi provides evidence for haptophyte-stramenopile association and a chimeric haptophyte nuclear genome.

Miller JJ, Delwiche CF.

Mar Genomics. 2015 Jun;21:31-42. doi: 10.1016/j.margen.2015.02.008. Epub 2015 Mar 5.

PMID:
25746767
12.

Conservation of ethylene as a plant hormone over 450 million years of evolution.

Ju C, Van de Poel B, Cooper ED, Thierer JH, Gibbons TR, Delwiche CF, Chang C.

Nat Plants. 2015 Jan 8;1:14004. doi: 10.1038/nplants.2014.4.

PMID:
27246051
13.

Metatranscriptome profiling of a harmful algal bloom.

Cooper ED, Bentlage B, Gibbons TR, Bachvaroff TR, Delwiche CF.

Harmful Algae. 2014 Jul;37:75-83.

14.

Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae.

Alexandrou MA, Cardinale BJ, Hall JD, Delwiche CF, Fritschie K, Narwani A, Venail PA, Bentlage B, Pankey MS, Oakley TH.

Proc Biol Sci. 2015 Jan 22;282(1799):20141745. doi: 10.1098/rspb.2014.1745.

15.

Directional auxin transport mechanisms in early diverging land plants.

Viaene T, Landberg K, Thelander M, Medvecka E, Pederson E, Feraru E, Cooper ED, Karimi M, Delwiche CF, Ljung K, Geisler M, Sundberg E, Friml J.

Curr Biol. 2014 Dec 1;24(23):2786-91. doi: 10.1016/j.cub.2014.09.056. Epub 2014 Nov 13.

16.

Genetic analysis of DEFECTIVE KERNEL1 loop function in three-dimensional body patterning in Physcomitrella patens.

Demko V, Perroud PF, Johansen W, Delwiche CF, Cooper ED, Remme P, Ako AE, Kugler KG, Mayer KF, Quatrano R, Olsen OA.

Plant Physiol. 2014 Oct;166(2):903-19. doi: 10.1104/pp.114.243758. Epub 2014 Sep 2.

17.

Dinoflagellate phylogeny revisited: using ribosomal proteins to resolve deep branching dinoflagellate clades.

Bachvaroff TR, Gornik SG, Concepcion GT, Waller RF, Mendez GS, Lippmeier JC, Delwiche CF.

Mol Phylogenet Evol. 2014 Jan;70:314-22. doi: 10.1016/j.ympev.2013.10.007. Epub 2013 Oct 14.

18.

Pan genome of the phytoplankton Emiliania underpins its global distribution.

Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G; Emiliania huxleyi Annotation Consortium, Dacks JB, Delwiche CF, Dyhrman ST, Glöckner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV.

Nature. 2013 Jul 11;499(7457):209-13. doi: 10.1038/nature12221. Epub 2013 Jun 12.

PMID:
23760476
19.

Erratum: Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

Finet C, Timme RE, Delwiche CF, Marletaz F.

Curr Biol. 2012 Aug 7;22(15):1456-7. No abstract available.

20.

Origin and evolution of PIN auxin transporters in the green lineage.

Viaene T, Delwiche CF, Rensing SA, Friml J.

Trends Plant Sci. 2013 Jan;18(1):5-10. doi: 10.1016/j.tplants.2012.08.009. Epub 2012 Sep 14.

PMID:
22981345
21.

Origin of strigolactones in the green lineage.

Delaux PM, Xie X, Timme RE, Puech-Pages V, Dunand C, Lecompte E, Delwiche CF, Yoneyama K, Bécard G, Séjalon-Delmas N.

New Phytol. 2012 Sep;195(4):857-71. doi: 10.1111/j.1469-8137.2012.04209.x. Epub 2012 Jun 27.

22.

Conserved and diversified gene families of monovalent cation/h(+) antiporters from algae to flowering plants.

Chanroj S, Wang G, Venema K, Zhang MW, Delwiche CF, Sze H.

Front Plant Sci. 2012 Feb 14;3:25. doi: 10.3389/fpls.2012.00025. eCollection 2012.

23.

Broad phylogenomic sampling and the sister lineage of land plants.

Timme RE, Bachvaroff TR, Delwiche CF.

PLoS One. 2012;7(1):e29696. doi: 10.1371/journal.pone.0029696. Epub 2012 Jan 13.

24.
25.

Ultrastructure of Amoebophrya sp. and its changes during the course of infection.

Miller JJ, Delwiche CF, Coats DW.

Protist. 2012 Sep;163(5):720-45. doi: 10.1016/j.protis.2011.11.007. Epub 2011 Dec 29.

PMID:
22209083
26.

Molecular diversity of the syndinean genus Euduboscquella based on single-cell PCR analysis.

Bachvaroff TR, Kim S, Guillou L, Delwiche CF, Coats DW.

Appl Environ Microbiol. 2012 Jan;78(2):334-45. doi: 10.1128/AEM.06678-11. Epub 2011 Nov 11.

27.

Plants.

Delwiche CF, Timme RE.

Curr Biol. 2011 Jun 7;21(11):R417-22. doi: 10.1016/j.cub.2011.04.021. Review. No abstract available.

28.

Alveolate phylogeny inferred using concatenated ribosomal proteins.

Bachvaroff TR, Handy SM, Place AR, Delwiche CF.

J Eukaryot Microbiol. 2011 May-Jun;58(3):223-33. doi: 10.1111/j.1550-7408.2011.00555.x. Epub 2011 Apr 25.

PMID:
21518081
29.

Evolution of light-harvesting complex proteins from Chl c-containing algae.

Hoffman GE, Sanchez Puerta MV, Delwiche CF.

BMC Evol Biol. 2011 Apr 15;11:101. doi: 10.1186/1471-2148-11-101.

30.

Dynamics of actin evolution in dinoflagellates.

Kim S, Bachvaroff TR, Handy SM, Delwiche CF.

Mol Biol Evol. 2011 Apr;28(4):1469-80. doi: 10.1093/molbev/msq332. Epub 2010 Dec 13.

PMID:
21149641
31.

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

Finet C, Timme RE, Delwiche CF, Marlétaz F.

Curr Biol. 2010 Dec 21;20(24):2217-22. doi: 10.1016/j.cub.2010.11.035. Epub 2010 Dec 9. Erratum in: Curr Biol. 2012 Aug 7;22(15):1456-7.

32.

Tintinnophagus acutus n. g., n. sp. (Phylum Dinoflagellata), an ectoparasite of the ciliate Tintinnopsis cylindrica Daday 1887, and its relationship to Duboscquodinium collini Grassé 1952.

Coats DW, Kim S, Bachvaroff TR, Handy SM, Delwiche CF.

J Eukaryot Microbiol. 2010 Nov-Dec;57(6):468-82. doi: 10.1111/j.1550-7408.2010.00504.x. Epub 2010 Sep 28. Erratum in: J Eukaryot Microbiol. 2011 Nov-Dec;58(6):545.

PMID:
20880034
33.
34.

PHYLOGENY OF FOUR DINOPHYSIACEAN GENERA (DINOPHYCEAE, DINOPHYSIALES) BASED ON rDNA SEQUENCES FROM SINGLE CELLS AND ENVIRONMENTAL SAMPLES(1).

Handy SM, Bachvaroff TR, Timme RE, Wayne Coats D, Kim S, Delwiche CF.

J Phycol. 2009 Oct;45(5):1163-74. doi: 10.1111/j.1529-8817.2009.00738.x. Epub 2009 Sep 10.

PMID:
27032361
35.

Molecular phylogeny of ocelloid-bearing dinoflagellates (Warnowiaceae) as inferred from SSU and LSU rDNA sequences.

Hoppenrath M, Bachvaroff TR, Handy SM, Delwiche CF, Leander BS.

BMC Evol Biol. 2009 May 25;9:116. doi: 10.1186/1471-2148-9-116.

36.

A HYPOTHESIS FOR PLASTID EVOLUTION IN CHROMALVEOLATES(1).

Sanchez-Puerta MV, Delwiche CF.

J Phycol. 2008 Oct;44(5):1097-107. doi: 10.1111/j.1529-8817.2008.00559.x. Epub 2008 Sep 3. Review.

PMID:
27041706
37.

Patterns of cell division in the filamentous Desmidiaceae, close green algal relatives of land plants.

Hall JD, McCourt RM, Delwiche CF.

Am J Bot. 2008 Jun;95(6):643-54. doi: 10.3732/ajb.2007210.

38.

PHYLOGENY OF THE CONJUGATING GREEN ALGAE BASED ON CHLOROPLAST AND MITOCHONDRIAL NUCLEOTIDE SEQUENCE DATA(1).

Hall JD, Karol KG, McCourt RM, Delwiche CF.

J Phycol. 2008 Apr;44(2):467-77. doi: 10.1111/j.1529-8817.2008.00485.x.

PMID:
27041201
39.

Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids.

Sanchez-Puerta MV, Bachvaroff TR, Delwiche CF.

Mol Phylogenet Evol. 2007 Aug;44(2):885-97. Epub 2007 Mar 14.

PMID:
17449283
40.

Retention of transcriptionally active cryptophyte nuclei by the ciliate Myrionecta rubra.

Johnson MD, Oldach D, Delwiche CF, Stoecker DK.

Nature. 2007 Jan 25;445(7126):426-8.

PMID:
17251979
41.

Plastid genes in a non-photosynthetic dinoflagellate.

Sanchez-Puerta MV, Lippmeier JC, Apt KE, Delwiche CF.

Protist. 2007 Jan;158(1):105-17. Epub 2006 Dec 5.

PMID:
17150410
42.

Charophyte algae and land plant origins.

McCourt RM, Delwiche CF, Karol KG.

Trends Ecol Evol. 2004 Dec;19(12):661-6.

PMID:
16701329
43.

Heterotachy processes in rhodophyte-derived secondhand plastid genes: Implications for addressing the origin and evolution of dinoflagellate plastids.

Shalchian-Tabrizi K, Skånseng M, Ronquist F, Klaveness D, Bachvaroff TR, Delwiche CF, Botnen A, Tengs T, Jakobsen KS.

Mol Biol Evol. 2006 Aug;23(8):1504-15. Epub 2006 May 12.

PMID:
16699169
44.

Rate variation as a function of gene origin in plastid-derived genes of peridinin-containing dinoflagellates.

Bachvaroff TR, Sanchez-Puerta MV, Delwiche CF.

J Mol Evol. 2006 Jan;62(1):42-52. Epub 2006 Jan 11.

PMID:
16408243
45.

The complete plastid genome sequence of the haptophyte Emiliania huxleyi: a comparison to other plastid genomes.

Sánchez Puerta MV, Bachvaroff TR, Delwiche CF.

DNA Res. 2005;12(2):151-6.

PMID:
16303746
46.

Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages.

Bachvaroff TR, Sanchez Puerta MV, Delwiche CF.

Mol Biol Evol. 2005 Sep;22(9):1772-82. Epub 2005 May 25.

PMID:
15917498
47.

Highly divergent SSU rRNA genes found in the marine ciliates Myrionecta rubra and Mesodinium pulex.

Johnson MD, Tengs T, Oldach DW, Delwiche CF, Stoecker DK.

Protist. 2004 Sep;155(3):347-59.

PMID:
15552061
48.

Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome.

Bachvaroff TR, Concepcion GT, Rogers CR, Herman EM, Delwiche CF.

Protist. 2004 Mar;155(1):65-78.

PMID:
15144059
49.

The complete mitochondrial genome sequence of the haptophyte Emiliania huxleyi and its relation to heterokonts (supplement).

Sánchez Puerta MV, Bachvaroff TR, Delwiche CF.

DNA Res. 2004 Feb 29;11(1):67-8. No abstract available.

PMID:
15141947
50.

The complete mitochondrial genome sequence of the haptophyte Emiliania huxleyi and its relation to heterokonts.

Sánchez Puerta MV, Bachvaroff TR, Delwiche CF.

DNA Res. 2004 Feb 29;11(1):1-10.

PMID:
15141941

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