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Benchmarking variant identification tools for plant diversity discovery.

Wu X, Heffelfinger C, Zhao H, Dellaporta SL.

BMC Genomics. 2019 Sep 9;20(1):701. doi: 10.1186/s12864-019-6057-7.


Genetic Architecture of a Rice Nested Association Mapping Population.

Fragoso CA, Moreno M, Wang Z, Heffelfinger C, Arbelaez LJ, Aguirre JA, Franco N, Romero LE, Labadie K, Zhao H, Dellaporta SL, Lorieux M.

G3 (Bethesda). 2017 Jun 7;7(6):1913-1926. doi: 10.1534/g3.117.041608.


Control of sexuality by the sk1-encoded UDP-glycosyltransferase of maize.

Hayward AP, Moreno MA, Howard TP 3rd, Hague J, Nelson K, Heffelfinger C, Romero S, Kausch AP, Glauser G, Acosta IF, Mottinger JP, Dellaporta SL.

Sci Adv. 2016 Oct 28;2(10):e1600991. eCollection 2016 Oct.


In situ embryo rescue for generation of wide intra- and interspecific hybrids of Panicum virgatum L.

Kausch AP, Tilelli M, Hague J, Heffelfinger C, Cunha D, Moreno M, Dellaporta SL, Nelson K.

Plant Biotechnol J. 2016 Nov;14(11):2168-2175. doi: 10.1111/pbi.12573. Epub 2016 Jun 1.


Imputing Genotypes in Biallelic Populations from Low-Coverage Sequence Data.

Fragoso CA, Heffelfinger C, Zhao H, Dellaporta SL.

Genetics. 2016 Feb;202(2):487-95. doi: 10.1534/genetics.115.182071. Epub 2015 Dec 29.


Flexible and scalable genotyping-by-sequencing strategies for population studies.

Heffelfinger C, Fragoso CA, Moreno MA, Overton JD, Mottinger JP, Zhao H, Tohme J, Dellaporta SL.

BMC Genomics. 2014 Nov 18;15:979. doi: 10.1186/1471-2164-15-979.


Identification of the maize gravitropism gene lazy plant1 by a transposon-tagging genome resequencing strategy.

Howard TP 3rd, Hayward AP, Tordillos A, Fragoso C, Moreno MA, Tohme J, Kausch AP, Mottinger JP, Dellaporta SL.

PLoS One. 2014 Jan 31;9(1):e87053. doi: 10.1371/journal.pone.0087053. eCollection 2014.


Evolutionary genetics of the hydroid allodeterminant alr2.

Gloria-Soria A, Moreno MA, Yund PO, Lakkis FG, Dellaporta SL, Buss LW.

Mol Biol Evol. 2012 Dec;29(12):3921-32. doi: 10.1093/molbev/mss197. Epub 2012 Aug 1.


Genetic Background and Allorecognition Phenotype in Hydractinia symbiolongicarpus.

Powell AE, Moreno M, Gloria-Soria A, Lakkis FG, Dellaporta SL, Buss LW.

G3 (Bethesda). 2011 Nov;1(6):499-504. doi: 10.1534/g3.111.001149. Epub 2011 Nov 1.


Genetic diversity of the allodeterminant alr2 in Hydractinia symbiolongicarpus.

Rosengarten RD, Moreno MA, Lakkis FG, Buss LW, Dellaporta SL.

Mol Biol Evol. 2011 Feb;28(2):933-47. doi: 10.1093/molbev/msq282. Epub 2010 Oct 21.


Hydractinia allodeterminant alr1 resides in an immunoglobulin superfamily-like gene complex.

Rosa SF, Powell AE, Rosengarten RD, Nicotra ML, Moreno MA, Grimwood J, Lakkis FG, Dellaporta SL, Buss LW.

Curr Biol. 2010 Jun 22;20(12):1122-7. doi: 10.1016/j.cub.2010.04.050. Epub 2010 May 27.


Allorecognition and chimerism in an invertebrate model organism.

Lakkis FG, Dellaporta SL, Buss LW.

Organogenesis. 2008 Oct;4(4):236-40.


A hypervariable invertebrate allodeterminant.

Nicotra ML, Powell AE, Rosengarten RD, Moreno M, Grimwood J, Lakkis FG, Dellaporta SL, Buss LW.

Curr Biol. 2009 Apr 14;19(7):583-9. doi: 10.1016/j.cub.2009.02.040. Epub 2009 Mar 19.


Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoon" hypothesis.

Schierwater B, Eitel M, Jakob W, Osigus HJ, Hadrys H, Dellaporta SL, Kolokotronis SO, Desalle R.

PLoS Biol. 2009 Jan 27;7(1):e20. doi: 10.1371/journal.pbio.1000020.


tasselseed1 is a lipoxygenase affecting jasmonic acid signaling in sex determination of maize.

Acosta IF, Laparra H, Romero SP, Schmelz E, Hamberg M, Mottinger JP, Moreno MA, Dellaporta SL.

Science. 2009 Jan 9;323(5911):262-5. doi: 10.1126/science.1164645.


The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative.

Persson B, Kallberg Y, Bray JE, Bruford E, Dellaporta SL, Favia AD, Duarte RG, Jörnvall H, Kavanagh KL, Kedishvili N, Kisiela M, Maser E, Mindnich R, Orchard S, Penning TM, Thornton JM, Adamski J, Oppermann U.

Chem Biol Interact. 2009 Mar 16;178(1-3):94-8. doi: 10.1016/j.cbi.2008.10.040. Epub 2008 Nov 5.


The Trichoplax genome and the nature of placozoans.

Srivastava M, Begovic E, Chapman J, Putnam NH, Hellsten U, Kawashima T, Kuo A, Mitros T, Salamov A, Carpenter ML, Signorovitch AY, Moreno MA, Kamm K, Grimwood J, Schmutz J, Shapiro H, Grigoriev IV, Buss LW, Schierwater B, Dellaporta SL, Rokhsar DS.

Nature. 2008 Aug 21;454(7207):955-60. doi: 10.1038/nature07191.


The early ANTP gene repertoire: insights from the placozoan genome.

Schierwater B, Kamm K, Srivastava M, Rokhsar D, Rosengarten RD, Dellaporta SL.

PLoS One. 2008 Aug 21;3(8):e2457. doi: 10.1371/journal.pone.0002457.


The mitochondrial genome of the hexactinellid sponge Aphrocallistes vastus: evidence for programmed translational frameshifting.

Rosengarten RD, Sperling EA, Moreno MA, Leys SP, Dellaporta SL.

BMC Genomics. 2008 Jan 23;9:33. doi: 10.1186/1471-2164-9-33.


Cell cycle arrest of stamen initials in maize sex determination.

Kim JC, Laparra H, Calderón-Urrea A, Mottinger JP, Moreno MA, Dellaporta SL.

Genetics. 2007 Dec;177(4):2547-51.


Differential effect of allorecognition loci on phenotype in Hydractinia symbiolongicarpus (Cnidaria: Hydrozoa).

Powell AE, Nicotra ML, Moreno MA, Lakkis FG, Dellaporta SL, Buss LW.

Genetics. 2007 Dec;177(4):2101-7. Epub 2007 Oct 18.


Embryonic chimerism does not induce tolerance in an invertebrate model organism.

Poudyal M, Rosa S, Powell AE, Moreno M, Dellaporta SL, Buss LW, Lakkis FG.

Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4559-64. Epub 2007 Mar 5.


Biochemical characterization of TASSELSEED 2, an essential plant short-chain dehydrogenase/reductase with broad spectrum activities.

Wu X, Knapp S, Stamp A, Stammers DK, Jörnvall H, Dellaporta SL, Oppermann U.

FEBS J. 2007 Mar;274(5):1172-82.


Comparative genomics of large mitochondria in placozoans.

Signorovitch AY, Buss LW, Dellaporta SL.

PLoS Genet. 2007 Jan 12;3(1):e13.


Caribbean placozoan phylogeography.

Signorovitch AY, Dellaporta SL, Buss LW.

Biol Bull. 2006 Oct;211(2):149-56.


Mitochondrial genome of Trichoplax adhaerens supports placozoa as the basal lower metazoan phylum.

Dellaporta SL, Xu A, Sagasser S, Jakob W, Moreno MA, Buss LW, Schierwater B.

Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8751-6. Epub 2006 May 26.


Axial patterning and diversification in the cnidaria predate the Hox system.

Kamm K, Schierwater B, Jakob W, Dellaporta SL, Miller DJ.

Curr Biol. 2006 May 9;16(9):920-6. Epub 2006 Mar 23.


A low diversity of ANTP class homeobox genes in Placozoa.

Monteiro AS, Schierwater B, Dellaporta SL, Holland PW.

Evol Dev. 2006 Mar-Apr;8(2):174-82.


Molecular signatures for sex in the Placozoa.

Signorovitch AY, Dellaporta SL, Buss LW.

Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15518-22. Epub 2005 Oct 17.


A guard-cell-specific MYB transcription factor regulates stomatal movements and plant drought tolerance.

Cominelli E, Galbiati M, Vavasseur A, Conti L, Sala T, Vuylsteke M, Leonhardt N, Dellaporta SL, Tonelli C.

Curr Biol. 2005 Jul 12;15(13):1196-200.


Large-scale T-DNA mutagenesis in Arabidopsis for functional genomic analysis.

Galbiati M, Moreno MA, Nadzan G, Zourelidou M, Dellaporta SL.

Funct Integr Genomics. 2000 May;1(1):25-34.


Maize yellow stripe1 encodes a membrane protein directly involved in Fe(III) uptake.

Curie C, Panaviene Z, Loulergue C, Dellaporta SL, Briat JF, Walker EL.

Nature. 2001 Jan 18;409(6818):346-9.


Cell death and cell protection genes determine the fate of pistils in maize.

Calderon-Urrea A, Dellaporta SL.

Development. 1999 Feb;126(3):435-41.


Ectopic anthocyanin pigmentation in maize as a tool for defining interactions between homologous regulatory factors.

Consonni G, Ronchi A, Pilu R, Gavazzi G, Dellaporta SL, Tonelli C.

Mol Gen Genet. 1997 Oct;256(3):265-76.


The Ac-st2 element of maize exhibits a positive dosage effect and epigenetic regulation.

Brutnell TP, May BP, Dellaporta SL.

Genetics. 1997 Oct;147(2):823-34.


Insertions of a novel class of transposable elements with a strong target site preference at the r locus of maize.

Walker EL, Eggleston WB, Demopulos D, Kermicle J, Dellaporta SL.

Genetics. 1997 Jun;146(2):681-93.


Evidence for a common sex determination mechanism for pistil abortion in maize and in its wild relative Tripsacum.

Li D, Blakey CA, Dewald C, Dellaporta SL.

Proc Natl Acad Sci U S A. 1997 Apr 15;94(8):4217-22.


liguleless1 encodes a nuclear-localized protein required for induction of ligules and auricles during maize leaf organogenesis.

Moreno MA, Harper LC, Krueger RW, Dellaporta SL, Freeling M.

Genes Dev. 1997 Mar 1;11(5):616-28.


Demethylation-induced developmental pleiotropy in Arabidopsis.

Ronemus MJ, Galbiati M, Ticknor C, Chen J, Dellaporta SL.

Science. 1996 Aug 2;273(5275):654-7.


Leaf permease1 gene of maize is required for chloroplast development.

Schultes NP, Brutnell TP, Allen A, Dellaporta SL, Nelson T, Chen J.

Plant Cell. 1996 Mar;8(3):463-75.


Transposon-mediated chromosomal rearrangements and gene duplications in the formation of the maize R-r complex.

Walker EL, Robbins TP, Bureau TE, Kermicle J, Dellaporta SL.

EMBO J. 1995 May 15;14(10):2350-63.


The sex determination process in maize.

Dellaporta SL, Calderon-Urrea A.

Science. 1994 Dec 2;266(5190):1501-5. Review.


Somatic inactivation and reactivation of Ac associated with changes in cytosine methylation and transposase expression.

Brutnell TP, Dellaporta SL.

Genetics. 1994 Sep;138(1):213-25. Erratum in: Genetics 1994 Oct;138(2):547.


Sex determination in flowering plants.

Dellaporta SL, Calderon-Urrea A.

Plant Cell. 1993 Oct;5(10):1241-51. Review.


Determination of paternity in dragonflies by Random Amplified Polymorphic DNA fingerprinting.

Hadrys H, Schierwater B, Dellaporta SL, DeSalle R, Buss LW.

Mol Ecol. 1993 Apr;2(2):79-87.


Reconstitutional mutagenesis of the maize P gene by short-range Ac transpositions.

Moreno MA, Chen J, Greenblatt I, Dellaporta SL.

Genetics. 1992 Aug;131(4):939-56.


Molecular analysis of Ac transposition and DNA replication.

Chen J, Greenblatt IM, Dellaporta SL.

Genetics. 1992 Mar;130(3):665-76.


cDNA nucleotide sequence of Sn, a regulatory gene in maize.

Consonni G, Viotti A, Dellaporta SL, Tonelli C.

Nucleic Acids Res. 1992 Jan 25;20(2):373. No abstract available.


Meiotic instability of the R-r complex arising from displaced intragenic exchange and intrachromosomal rearrangement.

Robbins TP, Walker EL, Kermicle JL, Alleman M, Dellaporta SL.

Genetics. 1991 Sep;129(1):271-83.

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