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Items: 1 to 50 of 82

1.

SnRK2 protein kinases and mRNA decapping machinery control root development and response to salt.

Kawa D, Meyer AJ, Dekker HL, Abd-El-Haliem A, Gevaert K, Van De Slijke E, Maszkowska J, Bucholc M, Dobrowolska G, De Jaeger G, Schuurink RC, Haring MA, Testerink C.

Plant Physiol. 2019 Sep 30. pii: pp.00818.2019. doi: 10.1104/pp.19.00818. [Epub ahead of print]

2.

Identification and Characterization of (3Z):(2E)-Hexenal Isomerases from Cucumber.

Spyropoulou EA, Dekker HL, Steemers L, van Maarseveen JH, de Koster CG, Haring MA, Schuurink RC, Allmann S.

Front Plant Sci. 2017 Aug 2;8:1342. doi: 10.3389/fpls.2017.01342. eCollection 2017.

3.

Non-SMC Element 2 (NSMCE2) of the SMC5/6 Complex Helps to Resolve Topological Stress.

Verver DE, Zheng Y, Speijer D, Hoebe R, Dekker HL, Repping S, Stap J, Hamer G.

Int J Mol Sci. 2016 Oct 26;17(11). pii: E1782.

4.

Expression of holo-proteorhodopsin in Synechocystis sp. PCC 6803.

Chen Q, van der Steen JB, Dekker HL, Ganapathy S, de Grip WJ, Hellingwerf KJ.

Metab Eng. 2016 May;35:83-94. doi: 10.1016/j.ymben.2016.02.001. Epub 2016 Feb 8.

PMID:
26869136
5.

Bacillus subtilis Spore Inner Membrane Proteome.

Zheng L, Abhyankar W, Ouwerling N, Dekker HL, van Veen H, van der Wel NN, Roseboom W, de Koning LJ, Brul S, de Koster CG.

J Proteome Res. 2016 Feb 5;15(2):585-94. doi: 10.1021/acs.jproteome.5b00976. Epub 2016 Jan 13.

PMID:
26731423
6.

Proteomic analysis of hyperadhesive Candida glabrata clinical isolates reveals a core wall proteome and differential incorporation of adhesins.

Gómez-Molero E, de Boer AD, Dekker HL, Moreno-Martínez A, Kraneveld EA, Ichsan, Chauhan N, Weig M, de Soet JJ, de Koster CG, Bader O, de Groot PW.

FEMS Yeast Res. 2015 Dec;15(8). pii: fov098. doi: 10.1093/femsyr/fov098. Epub 2015 Nov 5.

PMID:
26546455
7.

Identification of Secreted Candida Proteins Using Mass Spectrometry.

Gómez-Molero E, Dekker HL, de Boer AD, de Groot PW.

Methods Mol Biol. 2016;1356:79-94. doi: 10.1007/978-1-4939-3052-4_7.

PMID:
26519067
8.

Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803.

Borirak O, de Koning LJ, van der Woude AD, Hoefsloot HC, Dekker HL, Roseboom W, de Koster CG, Hellingwerf KJ.

Biotechnol Biofuels. 2015 Aug 5;8:111. doi: 10.1186/s13068-015-0294-z. eCollection 2015.

9.

Time-series analysis of the transcriptome and proteome of Escherichia coli upon glucose repression.

Borirak O, Rolfe MD, de Koning LJ, Hoefsloot HC, Bekker M, Dekker HL, Roseboom W, Green J, de Koster CG, Hellingwerf KJ.

Biochim Biophys Acta. 2015 Oct;1854(10 Pt A):1269-79. doi: 10.1016/j.bbapap.2015.05.017. Epub 2015 Jun 4.

10.

Comprehensive Two-Dimensional Liquid Chromatography with Stationary-Phase-Assisted Modulation Coupled to High-Resolution Mass Spectrometry Applied to Proteome Analysis of Saccharomyces cerevisiae.

Vonk RJ, Gargano AF, Davydova E, Dekker HL, Eeltink S, de Koning LJ, Schoenmakers PJ.

Anal Chem. 2015;87(10):5387-94. doi: 10.1021/acs.analchem.5b00708. Epub 2015 May 5.

PMID:
25894977
11.

Temperature Dependence of the Proteome Profile of the Psychrotolerant Pathogenic Food Spoiler Bacillus weihenstephanensis Type Strain WSBC 10204.

Stelder SK, Mahmud SA, Dekker HL, de Koning LJ, Brul S, de Koster CG.

J Proteome Res. 2015 May 1;14(5):2169-76. doi: 10.1021/pr501307t. Epub 2015 Apr 22.

PMID:
25853650
12.

Colorectal mucus binds DC-SIGN and inhibits HIV-1 trans-infection of CD4+ T-lymphocytes.

Stax MJ, Mouser EE, van Montfort T, Sanders RW, de Vries HJ, Dekker HL, Herrera C, Speijer D, Pollakis G, Paxton WA.

PLoS One. 2015 Mar 20;10(3):e0122020. doi: 10.1371/journal.pone.0122020. eCollection 2015.

13.

H(2)O(2) production in species of the Lactobacillus acidophilus group: a central role for a novel NADH-dependent flavin reductase.

Hertzberger R, Arents J, Dekker HL, Pridmore RD, Gysler C, Kleerebezem M, de Mattos MJ.

Appl Environ Microbiol. 2014 Apr;80(7):2229-39. doi: 10.1128/AEM.04272-13. Epub 2014 Jan 31.

14.

In pursuit of protein targets: proteomic characterization of bacterial spore outer layers.

Abhyankar W, Hossain AH, Djajasaputra A, Permpoonpattana P, Ter Beek A, Dekker HL, Cutting SM, Brul S, de Koning LJ, de Koster CG.

J Proteome Res. 2013 Oct 4;12(10):4507-21. doi: 10.1021/pr4005629. Epub 2013 Sep 23.

PMID:
23998435
15.

Identification of novel candidate phosphatidic acid-binding proteins involved in the salt-stress response of Arabidopsis thaliana roots.

McLoughlin F, Arisz SA, Dekker HL, Kramer G, de Koster CG, Haring MA, Munnik T, Testerink C.

Biochem J. 2013 Mar 15;450(3):573-81. doi: 10.1042/BJ20121639. Erratum in: Biochem J. 2013 Apr 15;451(2):343.

PMID:
23323832
16.

Selective enrichment and identification of cross-linked peptides to study 3-D structures of protein complexes by mass spectrometry.

Buncherd H, Nessen MA, Nouse N, Stelder SK, Roseboom W, Dekker HL, Arents JC, Smeenk LE, Wanner MJ, van Maarseveen JH, Yang X, Lewis PJ, de Koning LJ, de Koster CG, de Jong L.

J Proteomics. 2012 Apr 3;75(7):2205-15. doi: 10.1016/j.jprot.2012.01.025. Epub 2012 Feb 4.

PMID:
22326961
17.

Time-series resolution of gradual nitrogen starvation and its impact on photosynthesis in the cyanobacterium Synechocystis PCC 6803.

Krasikov V, Aguirre von Wobeser E, Dekker HL, Huisman J, Matthijs HC.

Physiol Plant. 2012 Jul;145(3):426-39. doi: 10.1111/j.1399-3054.2012.01585.x. Epub 2012 Mar 14.

PMID:
22289076
18.

Self-assembly of a confined rhodium catalyst for asymmetric hydroformylation of unfunctionalized internal alkenes.

Gadzikwa T, Bellini R, Dekker HL, Reek JN.

J Am Chem Soc. 2012 Feb 15;134(6):2860-3. doi: 10.1021/ja211455j. Epub 2012 Feb 1.

PMID:
22280096
19.

Native thrombocidin-1 and unfolded thrombocidin-1 exert antimicrobial activity via distinct structural elements.

Kwakman PH, Krijgsveld J, de Boer L, Nguyen LT, Boszhard L, Vreede J, Dekker HL, Speijer D, Drijfhout JW, te Velde AA, Crielaard W, Vogel HJ, Vandenbroucke-Grauls CM, Zaat SA.

J Biol Chem. 2011 Dec 16;286(50):43506-14. doi: 10.1074/jbc.M111.248641. Epub 2011 Oct 24.

20.

Phosphatidylinositol 4-phosphate is associated to extracellular lipoproteic fractions and is detected in tomato apoplastic fluids.

Gonorazky G, Laxalt AM, Dekker HL, Rep M, Munnik T, Testerink C, de la Canal L.

Plant Biol (Stuttg). 2012 Jan;14(1):41-9. doi: 10.1111/j.1438-8677.2011.00488.x. Epub 2011 Jun 15.

PMID:
21972816
21.

Identification and differential gene expression of adhesin-like wall proteins in Candida glabrata biofilms.

Kraneveld EA, de Soet JJ, Deng DM, Dekker HL, de Koster CG, Klis FM, Crielaard W, de Groot PW.

Mycopathologia. 2011 Dec;172(6):415-27. doi: 10.1007/s11046-011-9446-2. Epub 2011 Jul 17.

PMID:
21769633
22.

Bis(metallo) capsules based on two ionic diphosphines.

Koblenz TS, Dekker HL, de Koster CG, van Leeuwen PW, Reek JN.

Chem Asian J. 2011 Sep 5;6(9):2431-43. doi: 10.1002/asia.201100073. Epub 2011 Jul 4.

PMID:
21728245
23.

Diphosphine capsules for transition-metal encapsulation.

Koblenz TS, Dekker HL, de Koster CG, van Leeuwen PW, Reek JN.

Chem Asian J. 2011 Sep 5;6(9):2444-62. doi: 10.1002/asia.201100092. Epub 2011 Jun 9.

PMID:
21661114
24.

Effects of fluconazole on the secretome, the wall proteome, and wall integrity of the clinical fungus Candida albicans.

Sorgo AG, Heilmann CJ, Dekker HL, Bekker M, Brul S, de Koster CG, de Koning LJ, Klis FM.

Eukaryot Cell. 2011 Aug;10(8):1071-81. doi: 10.1128/EC.05011-11. Epub 2011 May 27.

25.

Hyphal induction in the human fungal pathogen Candida albicans reveals a characteristic wall protein profile.

Heilmann CJ, Sorgo AG, Siliakus AR, Dekker HL, Brul S, de Koster CG, de Koning LJ, Klis FM.

Microbiology. 2011 Aug;157(Pt 8):2297-2307. doi: 10.1099/mic.0.049395-0. Epub 2011 May 20.

PMID:
21602216
26.

Identification of the peroxidase-generated intermolecular dityrosine cross-link in bovine α-lactalbumin.

Heijnis WH, Dekker HL, de Koning LJ, Wierenga PA, Westphal AH, de Koster CG, Gruppen H, van Berkel WJ.

J Agric Food Chem. 2011 Jan 12;59(1):444-9. doi: 10.1021/jf104298y. Epub 2010 Dec 16.

PMID:
21162537
27.

The tomato xylem sap protein XSP10 is required for full susceptibility to Fusarium wilt disease.

Krasikov V, Dekker HL, Rep M, Takken FL.

J Exp Bot. 2011 Jan;62(3):963-73. doi: 10.1093/jxb/erq327. Epub 2010 Oct 25.

28.

Mass spectrometric quantification of the adaptations in the wall proteome of Candida albicans in response to ambient pH.

Sosinska GJ, de Koning LJ, de Groot PW, Manders EM, Dekker HL, Hellingwerf KJ, de Koster CG, Klis FM.

Microbiology. 2011 Jan;157(Pt 1):136-46. doi: 10.1099/mic.0.044206-0. Epub 2010 Sep 23.

PMID:
20864472
29.

Mass spectrometric analysis of the secretome of Candida albicans.

Sorgo AG, Heilmann CJ, Dekker HL, Brul S, de Koster CG, Klis FM.

Yeast. 2010 Aug;27(8):661-72. doi: 10.1002/yea.1775.

30.

The Candida albicans cell wall protein Rhd3/Pga29 is abundant in the yeast form and contributes to virulence.

de Boer AD, de Groot PW, Weindl G, Schaller M, Riedel D, Diez-Orejas R, Klis FM, de Koster CG, Dekker HL, Gross U, Bader O, Weig M.

Yeast. 2010 Aug;27(8):611-24. doi: 10.1002/yea.1790.

31.

Identification and quantitation of newly synthesized proteins in Escherichia coli by enrichment of azidohomoalanine-labeled peptides with diagonal chromatography.

Kramer G, Sprenger RR, Back J, Dekker HL, Nessen MA, van Maarseveen JH, de Koning LJ, Hellingwerf KJ, de Jong L, de Koster CG.

Mol Cell Proteomics. 2009 Jul;8(7):1599-611. doi: 10.1074/mcp.M800392-MCP200. Epub 2009 Mar 25.

32.

The cell wall of the human pathogen Candida glabrata: differential incorporation of novel adhesin-like wall proteins.

de Groot PW, Kraneveld EA, Yin QY, Dekker HL, Gross U, Crielaard W, de Koster CG, Bader O, Klis FM, Weig M.

Eukaryot Cell. 2008 Nov;7(11):1951-64. doi: 10.1128/EC.00284-08. Epub 2008 Sep 19.

33.

Disulfide bond structure and domain organization of yeast beta(1,3)-glucanosyltransferases involved in cell wall biogenesis.

Popolo L, Ragni E, Carotti C, Palomares O, Aardema R, Back JW, Dekker HL, de Koning LJ, de Jong L, de Koster CG.

J Biol Chem. 2008 Jul 4;283(27):18553-65. doi: 10.1074/jbc.M801562200. Epub 2008 May 9.

34.

The novel Cladosporium fulvum lysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species.

Bolton MD, van Esse HP, Vossen JH, de Jonge R, Stergiopoulos I, Stulemeijer IJ, van den Berg GC, Borrás-Hidalgo O, Dekker HL, de Koster CG, de Wit PJ, Joosten MH, Thomma BP.

Mol Microbiol. 2008 Jul;69(1):119-36. doi: 10.1111/j.1365-2958.2008.06270.x. Epub 2008 Apr 28.

35.

Detection of cross-links between FtsH, YidC, HflK/C suggests a linked role for these proteins in quality control upon insertion of bacterial inner membrane proteins.

van Bloois E, Dekker HL, Fröderberg L, Houben EN, Urbanus ML, de Koster CG, de Gier JW, Luirink J.

FEBS Lett. 2008 Apr 30;582(10):1419-24. doi: 10.1016/j.febslet.2008.02.082. Epub 2008 Apr 1.

36.

Effect of Psidium cattleianum leaf extract on Streptococcus mutans viability, protein expression and acid production.

Brighenti FL, Luppens SB, Delbem AC, Deng DM, Hoogenkamp MA, Gaetti-Jardim E Jr, Dekker HL, Crielaard W, ten Cate JM.

Caries Res. 2008;42(2):148-54. doi: 10.1159/000121439. Epub 2008 Mar 27.

PMID:
18367836
37.

Hypoxic conditions and iron restriction affect the cell-wall proteome of Candida albicans grown under vagina-simulative conditions.

Sosinska GJ, de Groot PWJ, Teixeira de Mattos MJ, Dekker HL, de Koster CG, Hellingwerf KJ, Klis FM.

Microbiology. 2008 Feb;154(Pt 2):510-520. doi: 10.1099/mic.0.2007/012617-0.

PMID:
18227255
38.

The mixed xylem sap proteome of Fusarium oxysporum-infected tomato plants.

Houterman PM, Speijer D, Dekker HL, DE Koster CG, Cornelissen BJ, Rep M.

Mol Plant Pathol. 2007 Mar;8(2):215-21. doi: 10.1111/j.1364-3703.2007.00384.x.

PMID:
20507493
39.

Bisphosphine based hetero-capsules for the encapsulation of transition metals.

Koblenz TS, Dekker HL, de Koster CG, van Leeuwen PW, Reek JN.

Chem Commun (Camb). 2006 Apr 28;(16):1700-2. Epub 2006 Jan 24.

PMID:
16609776
40.

LePLDbeta1 activation and relocalization in suspension-cultured tomato cells treated with xylanase.

Bargmann BO, Laxalt AM, Riet BT, Schouten E, van Leeuwen W, Dekker HL, de Koster CG, Haring MA, Munnik T.

Plant J. 2006 Feb;45(3):358-68.

41.

Heat shock protein 90 and its co-chaperone protein phosphatase 5 interact with distinct regions of the tomato I-2 disease resistance protein.

de la Fuente van Bentem S, Vossen JH, de Vries KJ, van Wees S, Tameling WI, Dekker HL, de Koster CG, Haring MA, Takken FL, Cornelissen BJ.

Plant J. 2005 Jul;43(2):284-98.

42.
43.

A small, cysteine-rich protein secreted by Fusarium oxysporum during colonization of xylem vessels is required for I-3-mediated resistance in tomato.

Rep M, van der Does HC, Meijer M, van Wijk R, Houterman PM, Dekker HL, de Koster CG, Cornelissen BJ.

Mol Microbiol. 2004 Sep;53(5):1373-83.

44.

Proteomic analysis of Candida albicans cell walls reveals covalently bound carbohydrate-active enzymes and adhesins.

de Groot PW, de Boer AD, Cunningham J, Dekker HL, de Jong L, Hellingwerf KJ, de Koster C, Klis FM.

Eukaryot Cell. 2004 Aug;3(4):955-65.

45.

Supramolecular organization and dual function of the IsiA chlorophyll-binding protein in cyanobacteria.

Yeremenko N, Kouril R, Ihalainen JA, D'Haene S, van Oosterwijk N, Andrizhiyevskaya EG, Keegstra W, Dekker HL, Hagemann M, Boekema EJ, Matthijs HC, Dekker JP.

Biochemistry. 2004 Aug 17;43(32):10308-13.

PMID:
15301529
46.

Isolation and identification of phosphatidic acid targets from plants.

Testerink C, Dekker HL, Lim ZY, Johns MK, Holmes AB, Koster CG, Ktistakis NT, Munnik T.

Plant J. 2004 Aug;39(4):527-36.

47.

Phosphorylation of androgen receptor isoforms.

Wong HY, Burghoorn JA, Van Leeuwen M, De Ruiter PE, Schippers E, Blok LJ, Li KW, Dekker HL, De Jong L, Trapman J, Grootegoed JA, Brinkmann AO.

Biochem J. 2004 Oct 15;383(Pt 2):267-76.

48.

Transglutaminase-mediated modification of glutamine and lysine residues in native bovine beta-lactoglobulin.

Nieuwenhuizen WF, Dekker HL, Gröneveld T, de Koster CG, de Jong GA.

Biotechnol Bioeng. 2004 Feb 5;85(3):248-58.

PMID:
14748079
49.

Modification of glutamine and lysine residues in holo and apo alpha-lactalbumin with microbial transglutaminase.

Nieuwenhuizen WF, Dekker HL, de Koning LJ, Gröneveld T, de Koster CG, de Jong GA.

J Agric Food Chem. 2003 Nov 19;51(24):7132-9.

PMID:
14611184
50.

A tomato xylem sap protein represents a new family of small cysteine-rich proteins with structural similarity to lipid transfer proteins.

Rep M, Dekker HL, Vossen JH, de Boer AD, Houterman PM, de Koster CG, Cornelissen BJ.

FEBS Lett. 2003 Jan 16;534(1-3):82-6.

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