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Items: 1 to 50 of 400

1.

Mechanically controlled quantum interference in graphene break junctions.

Caneva S, Gehring P, García-Suárez VM, García-Fuente A, Stefani D, Olavarria-Contreras IJ, Ferrer J, Dekker C, van der Zant HSJ.

Nat Nanotechnol. 2018 Sep 17. doi: 10.1038/s41565-018-0258-0. [Epub ahead of print]

PMID:
30224794
2.

Paving the way to single-molecule protein sequencing.

Restrepo-Pérez L, Joo C, Dekker C.

Nat Nanotechnol. 2018 Sep;13(9):786-796. doi: 10.1038/s41565-018-0236-6. Epub 2018 Sep 6. Review.

PMID:
30190617
3.

Detection of CRISPR-dCas9 on DNA with Solid-State Nanopores.

Yang W, Restrepo-Pérez L, Bengtson M, Heerema SJ, Birnie A, van der Torre J, Dekker C.

Nano Lett. 2018 Oct 10;18(10):6469-6474. doi: 10.1021/acs.nanolett.8b02968. Epub 2018 Sep 13.

4.

Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging.

Cheung P, Vallania F, Warsinske HC, Donato M, Schaffert S, Chang SE, Dvorak M, Dekker CL, Davis MM, Utz PJ, Khatri P, Kuo AJ.

Cell. 2018 May 31;173(6):1385-1397.e14. doi: 10.1016/j.cell.2018.03.079. Epub 2018 Apr 26.

PMID:
29706550
5.

Reversible Immobilization of Proteins in Sensors and Solid-State Nanopores.

Ananth A, Genua M, Aissaoui N, Díaz L, Eisele NB, Frey S, Dekker C, Richter RP, Görlich D.

Small. 2018 May;14(18):e1703357. doi: 10.1002/smll.201703357. Epub 2018 Apr 3.

PMID:
29611258
6.

On-chip microfluidic production of cell-sized liposomes.

Deshpande S, Dekker C.

Nat Protoc. 2018 May;13(5):856-874. doi: 10.1038/nprot.2017.160. Epub 2018 Mar 29.

PMID:
29599442
7.

Double Barrel Nanopores as a New Tool for Controlling Single-Molecule Transport.

Cadinu P, Campolo G, Pud S, Yang W, Edel JB, Dekker C, Ivanov AP.

Nano Lett. 2018 Apr 11;18(4):2738-2745. doi: 10.1021/acs.nanolett.8b00860. Epub 2018 Mar 28.

8.

Dividing the Archaeal Way: The Ancient Cdv Cell-Division Machinery.

Caspi Y, Dekker C.

Front Microbiol. 2018 Mar 2;9:174. doi: 10.3389/fmicb.2018.00174. eCollection 2018. Review.

9.

DNA origami scaffold for studying intrinsically disordered proteins of the nuclear pore complex.

Ketterer P, Ananth AN, Laman Trip DS, Mishra A, Bertosin E, Ganji M, van der Torre J, Onck P, Dietz H, Dekker C.

Nat Commun. 2018 Mar 2;9(1):902. doi: 10.1038/s41467-018-03313-w.

10.

Probing DNA Translocations with Inplane Current Signals in a Graphene Nanoribbon with a Nanopore.

Heerema SJ, Vicarelli L, Pud S, Schouten RN, Zandbergen HW, Dekker C.

ACS Nano. 2018 Mar 27;12(3):2623-2633. doi: 10.1021/acsnano.7b08635. Epub 2018 Feb 27.

11.

Real-time imaging of DNA loop extrusion by condensin.

Ganji M, Shaltiel IA, Bisht S, Kim E, Kalichava A, Haering CH, Dekker C.

Science. 2018 Apr 6;360(6384):102-105. doi: 10.1126/science.aar7831. Epub 2018 Feb 22.

PMID:
29472443
12.

Mechanical Division of Cell-Sized Liposomes.

Deshpande S, Spoelstra WK, van Doorn M, Kerssemakers J, Dekker C.

ACS Nano. 2018 Mar 27;12(3):2560-2568. doi: 10.1021/acsnano.7b08411. Epub 2018 Feb 22.

13.

Spatial structure of disordered proteins dictates conductance and selectivity in nuclear pore complex mimics.

Ananth AN, Mishra A, Frey S, Dwarkasing A, Versloot R, van der Giessen E, Görlich D, Onck P, Dekker C.

Elife. 2018 Feb 14;7. pii: e31510. doi: 10.7554/eLife.31510.

14.

Plasmablast antibody repertoires in elderly influenza vaccine responders exhibit restricted diversity but increased breadth of binding across influenza strains.

Ju CH, Blum LK, Kongpachith S, Lingampalli N, Mao R, Brodin P, Dekker CL, Davis MM, Robinson WH.

Clin Immunol. 2018 Aug;193:70-79. doi: 10.1016/j.clim.2018.01.011. Epub 2018 Feb 2.

PMID:
29410330
15.

Lithography-based fabrication of nanopore arrays in freestanding SiN and graphene membranes.

Verschueren DV, Yang W, Dekker C.

Nanotechnology. 2018 Apr 6;29(14):145302. doi: 10.1088/1361-6528/aaabce.

PMID:
29384130
16.

Direct observation of end resection by RecBCD during double-stranded DNA break repair in vivo.

Wiktor J, van der Does M, Büller L, Sherratt DJ, Dekker C.

Nucleic Acids Res. 2018 Feb 28;46(4):1821-1833. doi: 10.1093/nar/gkx1290.

17.

Integrating Sub-3 nm Plasmonic Gaps into Solid-State Nanopores.

Shi X, Verschueren D, Pud S, Dekker C.

Small. 2018 May;14(18):e1703307. doi: 10.1002/smll.201703307. Epub 2017 Dec 18.

PMID:
29251411
18.

Catching DNA with hoops-biophysical approaches to clarify the mechanism of SMC proteins.

Eeftens J, Dekker C.

Nat Struct Mol Biol. 2017 Dec 7;24(12):1012-1020. doi: 10.1038/nsmb.3507. Review.

PMID:
29215640
19.

The Dutch version of the self-report Child Activity and Limitations Interview in adolescents with chronic pain.

de Vries JE, Dekker C, Bastiaenen CHG, Goossens MEJB, Engelbert RHH, Verbunt JAMCF.

Disabil Rehabil. 2017 Nov 29:1-7. doi: 10.1080/09638288.2017.1407969. [Epub ahead of print]

PMID:
29185366
20.

Tailoring the appearance: what will synthetic cells look like?

Spoelstra WK, Deshpande S, Dekker C.

Curr Opin Biotechnol. 2018 Jun;51:47-56. doi: 10.1016/j.copbio.2017.11.005. Epub 2017 Nov 26. Review.

PMID:
29183001
21.

Accuracy and Discomfort of Different Types of Intranasal Specimen Collection Methods for Molecular Influenza Testing in Emergency Department Patients.

Frazee BW, Rodríguez-Hoces de la Guardia A, Alter H, Chen CG, Fuentes EL, Holzer AK, Lolas M, Mitra D, Vohra J, Dekker CL.

Ann Emerg Med. 2018 Apr;71(4):509-517.e1. doi: 10.1016/j.annemergmed.2017.09.010. Epub 2017 Nov 24.

PMID:
29174837
22.

Real-time detection of condensin-driven DNA compaction reveals a multistep binding mechanism.

Eeftens JM, Bisht S, Kerssemakers J, Kschonsak M, Haering CH, Dekker C.

EMBO J. 2017 Dec 1;36(23):3448-3457. doi: 10.15252/embj.201797596. Epub 2017 Nov 8.

23.

Dynamics of the human antibody repertoire after B cell depletion in systemic sclerosis.

de Bourcy CFA, Dekker CL, Davis MM, Nicolls MR, Quake SR.

Sci Immunol. 2017 Sep 29;2(15). pii: eaan8289. doi: 10.1126/sciimmunol.aan8289.

24.

The condensin complex is a mechanochemical motor that translocates along DNA.

Terakawa T, Bisht S, Eeftens JM, Dekker C, Haering CH, Greene EC.

Science. 2017 Nov 3;358(6363):672-676. doi: 10.1126/science.aan6516. Epub 2017 Sep 7.

25.

SDS-assisted protein transport through solid-state nanopores.

Restrepo-Pérez L, John S, Aksimentiev A, Joo C, Dekker C.

Nanoscale. 2017 Aug 17;9(32):11685-11693. doi: 10.1039/c7nr02450a.

26.

Continuous immunotypes describe human immune variation and predict diverse responses.

Kaczorowski KJ, Shekhar K, Nkulikiyimfura D, Dekker CL, Maecker H, Davis MM, Chakraborty AK, Brodin P.

Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):E6097-E6106. doi: 10.1073/pnas.1705065114. Epub 2017 Jul 10.

27.

Dutch version of the Fear of Pain Questionnaire for adolescents with chronic pain.

Dekker C, Bastiaenen CHG, de Vries JE, Simons LE, Goossens MEJB, Verbunt JAMCF.

Disabil Rehabil. 2018 Jun;40(11):1326-1332. doi: 10.1080/09638288.2017.1289255. Epub 2017 Mar 3.

PMID:
28637153
28.

Distortion of DNA Origami on Graphene Imaged with Advanced TEM Techniques.

Kabiri Y, Ananth AN, van der Torre J, Katan A, Hong JY, Malladi S, Kong J, Zandbergen H, Dekker C.

Small. 2017 Aug;13(31). doi: 10.1002/smll.201700876. Epub 2017 Jun 16.

PMID:
28620911
29.

On-chip density-based purification of liposomes.

Deshpande S, Birnie A, Dekker C.

Biomicrofluidics. 2017 May 8;11(3):034106. doi: 10.1063/1.4983174. eCollection 2017 May.

30.

Annealing helicase HARP closes RPA-stabilized DNA bubbles non-processively.

Burnham DR, Nijholt B, De Vlaminck I, Quan J, Yusufzai T, Dekker C.

Nucleic Acids Res. 2017 May 5;45(8):4687-4695. doi: 10.1093/nar/gkx147.

31.

Human centromeric CENP-A chromatin is a homotypic, octameric nucleosome at all cell cycle points.

Nechemia-Arbely Y, Fachinetti D, Miga KH, Sekulic N, Soni GV, Kim DH, Wong AK, Lee AY, Nguyen K, Dekker C, Ren B, Black BE, Cleveland DW.

J Cell Biol. 2017 Mar 6;216(3):607-621. doi: 10.1083/jcb.201608083. Epub 2017 Feb 24.

32.

Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division.

Bisson-Filho AW, Hsu YP, Squyres GR, Kuru E, Wu F, Jukes C, Sun Y, Dekker C, Holden S, VanNieuwenhze MS, Brun YV, Garner EC.

Science. 2017 Feb 17;355(6326):739-743. doi: 10.1126/science.aak9973.

33.

Nanoscience and Nanotechnology Cross Borders.

Khademhosseini A, Chan WW, Chhowalla M, Glotzer SC, Gogotsi Y, Hafner JH, Hammond PT, Hersam MC, Javey A, Kagan CR, Kotov NA, Lee ST, Li Y, Möhwald H, Mulvaney PA, Nel AE, Parak WJ, Penner RM, Rogach AL, Schaak RE, Stevens MM, Wee AT, Brinker J, Chen X, Chi L, Crommie M, Dekker C, Farokhzad O, Gerber C, Ginger DS, Irvine DJ, Kiessling LL, Kostarelos K, Landes C, Lee T, Leggett GJ, Liang XJ, Liz-Marzán L, Millstone J, Odom TW, Ozcan A, Prato M, Rao CN, Sailor MJ, Weiss E, Weiss PS.

ACS Nano. 2017 Feb 28;11(2):1123-1126. doi: 10.1021/acsnano.7b00953. Epub 2017 Feb 15. No abstract available.

PMID:
28199099
34.

Phylogenetic analysis of the human antibody repertoire reveals quantitative signatures of immune senescence and aging.

de Bourcy CF, Angel CJ, Vollmers C, Dekker CL, Davis MM, Quake SR.

Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):1105-1110. doi: 10.1073/pnas.1617959114. Epub 2017 Jan 17.

35.

The supercoiling state of DNA determines the handedness of both H3 and CENP-A nucleosomes.

Vlijm R, Kim SH, De Zwart PL, Dalal Y, Dekker C.

Nanoscale. 2017 Feb 2;9(5):1862-1870. doi: 10.1039/c6nr06245h.

PMID:
28094382
36.

Expression of specific inflammasome gene modules stratifies older individuals into two extreme clinical and immunological states.

Furman D, Chang J, Lartigue L, Bolen CR, Haddad F, Gaudilliere B, Ganio EA, Fragiadakis GK, Spitzer MH, Douchet I, Daburon S, Moreau JF, Nolan GP, Blanco P, Déchanet-Merville J, Dekker CL, Jojic V, Kuo CJ, Davis MM, Faustin B.

Nat Med. 2017 Feb;23(2):174-184. doi: 10.1038/nm.4267. Epub 2017 Jan 16.

37.

Mechanical Trapping of DNA in a Double-Nanopore System.

Pud S, Chao SH, Belkin M, Verschueren D, Huijben T, van Engelenburg C, Dekker C, Aksimentiev A.

Nano Lett. 2016 Dec 14;16(12):8021-8028. Epub 2016 Dec 1.

38.

Mapping out Min protein patterns in fully confined fluidic chambers.

Caspi Y, Dekker C.

Elife. 2016 Nov 25;5. pii: e19271. doi: 10.7554/eLife.19271.

39.

Correction: Lineage tracing of human B cells reveals the in vivo landscape of human antibody class switching.

Horns F, Vollmers C, Croote D, Mackey SF, Swan GE, Dekker CL, Davis MM, Quake SR.

Elife. 2016 Nov 9;5. pii: e23066. doi: 10.7554/eLife.23066. No abstract available.

40.

CENP-A and H3 Nucleosomes Display a Similar Stability to Force-Mediated Disassembly.

Kim SH, Vlijm R, van der Torre J, Dalal Y, Dekker C.

PLoS One. 2016 Nov 7;11(11):e0165078. doi: 10.1371/journal.pone.0165078. eCollection 2016.

41.

Molecular-level analysis of the serum antibody repertoire in young adults before and after seasonal influenza vaccination.

Lee J, Boutz DR, Chromikova V, Joyce MG, Vollmers C, Leung K, Horton AP, DeKosky BJ, Lee CH, Lavinder JJ, Murrin EM, Chrysostomou C, Hoi KH, Tsybovsky Y, Thomas PV, Druz A, Zhang B, Zhang Y, Wang L, Kong WP, Park D, Popova LI, Dekker CL, Davis MM, Carter CE, Ross TM, Ellington AD, Wilson PC, Marcotte EM, Mascola JR, Ippolito GC, Krammer F, Quake SR, Kwong PD, Georgiou G.

Nat Med. 2016 Dec;22(12):1456-1464. doi: 10.1038/nm.4224. Epub 2016 Nov 7.

42.

Direct observation of DNA knots using a solid-state nanopore.

Plesa C, Verschueren D, Pud S, van der Torre J, Ruitenberg JW, Witteveen MJ, Jonsson MP, Grosberg AY, Rabin Y, Dekker C.

Nat Nanotechnol. 2016 Dec;11(12):1093-1097. doi: 10.1038/nnano.2016.153. Epub 2016 Aug 15.

PMID:
27525473
43.

Defective Signaling in the JAK-STAT Pathway Tracks with Chronic Inflammation and Cardiovascular Risk in Aging Humans.

Shen-Orr SS, Furman D, Kidd BA, Hadad F, Lovelace P, Huang YW, Rosenberg-Hasson Y, Mackey S, Grisar FA, Pickman Y, Maecker HT, Chien YH, Dekker CL, Wu JC, Butte AJ, Davis MM.

Cell Syst. 2016 Oct 26;3(4):374-384.e4. doi: 10.1016/j.cels.2016.09.009. Epub 2016 Oct 13.

44.

Defective T Memory Cell Differentiation after Varicella Zoster Vaccination in Older Individuals.

Qi Q, Cavanagh MM, Le Saux S, Wagar LE, Mackey S, Hu J, Maecker H, Swan GE, Davis MM, Dekker CL, Tian L, Weyand CM, Goronzy JJ.

PLoS Pathog. 2016 Oct 20;12(10):e1005892. doi: 10.1371/journal.ppat.1005892. eCollection 2016 Oct.

45.

Increased Proinflammatory Responses of Monocytes and Plasmacytoid Dendritic Cells to Influenza A Virus Infection During Pregnancy.

Le Gars M, Kay AW, Bayless NL, Aziz N, Dekker CL, Swan GE, Davis MM, Blish CA.

J Infect Dis. 2016 Dec 1;214(11):1666-1671. Epub 2016 Sep 21.

46.

Lineage tracing of human B cells reveals the in vivo landscape of human antibody class switching.

Horns F, Vollmers C, Croote D, Mackey SF, Swan GE, Dekker CL, Davis MM, Quake SR.

Elife. 2016 Aug 2;5. pii: e16578. doi: 10.7554/eLife.16578. Erratum in: Elife. 2016 Nov 09;5:.

47.
48.

Intercalation-Based Single-Molecule Fluorescence Assay To Study DNA Supercoil Dynamics.

Ganji M, Kim SH, van der Torre J, Abbondanzieri E, Dekker C.

Nano Lett. 2016 Jul 13;16(7):4699-707. doi: 10.1021/acs.nanolett.6b02213. Epub 2016 Jul 1.

PMID:
27356180
49.

Multistability and dynamic transitions of intracellular Min protein patterns.

Wu F, Halatek J, Reiter M, Kingma E, Frey E, Dekker C.

Mol Syst Biol. 2016 Jun 8;12(6):873. doi: 10.15252/msb.20156724.

50.

CRISPR-mediated control of the bacterial initiation of replication.

Wiktor J, Lesterlin C, Sherratt DJ, Dekker C.

Nucleic Acids Res. 2016 May 5;44(8):3801-10. doi: 10.1093/nar/gkw214. Epub 2016 Apr 1.

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