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Items: 1 to 50 of 422

1.

1/f noise in solid-state nanopores is governed by access and surface regions.

Fragasso A, Pud S, Dekker C.

Nanotechnology. 2019 Sep 27;30(39):395202. doi: 10.1088/1361-6528/ab2d35. Epub 2019 Jun 27.

PMID:
31247592
2.

SIMON, an Automated Machine Learning System, Reveals Immune Signatures of Influenza Vaccine Responses.

Tomic A, Tomic I, Rosenberg-Hasson Y, Dekker CL, Maecker HT, Davis MM.

J Immunol. 2019 Jun 14. pii: ji1900033. doi: 10.4049/jimmunol.1900033. [Epub ahead of print]

PMID:
31201239
3.

Cell Boundary Confinement Sets the Size and Position of the E. coli Chromosome.

Wu F, Swain P, Kuijpers L, Zheng X, Felter K, Guurink M, Solari J, Jun S, Shimizu TS, Chaudhuri D, Mulder B, Dekker C.

Curr Biol. 2019 Jul 8;29(13):2131-2144.e4. doi: 10.1016/j.cub.2019.05.015. Epub 2019 May 30.

PMID:
31155353
4.

Bacteria-in-paper, a versatile platform to study bacterial ecology.

Hol FJH, Whitesides GM, Dekker C.

Ecol Lett. 2019 Aug;22(8):1316-1323. doi: 10.1111/ele.13274. Epub 2019 May 16.

PMID:
31099139
5.

Direct imaging of the circular chromosome in a live bacterium.

Wu F, Japaridze A, Zheng X, Wiktor J, Kerssemakers JWJ, Dekker C.

Nat Commun. 2019 May 16;10(1):2194. doi: 10.1038/s41467-019-10221-0.

6.

Visualization of unstained DNA nanostructures with advanced in-focus phase contrast TEM techniques.

Kabiri Y, Ravelli RBG, Lehnert T, Qi H, Katan AJ, Roest N, Kaiser U, Dekker C, Peters PJ, Zandbergen H.

Sci Rep. 2019 May 10;9(1):7218. doi: 10.1038/s41598-019-43687-5.

7.

Shape and Size Control of Artificial Cells for Bottom-Up Biology.

Fanalista F, Birnie A, Maan R, Burla F, Charles K, Pawlik G, Deshpande S, Koenderink GH, Dogterom M, Dekker C.

ACS Nano. 2019 May 28;13(5):5439-5450. doi: 10.1021/acsnano.9b00220. Epub 2019 May 16.

8.

Spatiotemporal control of coacervate formation within liposomes.

Deshpande S, Brandenburg F, Lau A, Last MGF, Spoelstra WK, Reese L, Wunnava S, Dogterom M, Dekker C.

Nat Commun. 2019 Apr 17;10(1):1800. doi: 10.1038/s41467-019-09855-x.

9.

An Integrated Microfluidic Platform for Quantifying Drug Permeation across Biomimetic Vesicle Membranes.

Schaich M, Cama J, Al Nahas K, Sobota D, Sleath H, Jahnke K, Deshpande S, Dekker C, Keyser UF.

Mol Pharm. 2019 Jun 3;16(6):2494-2501. doi: 10.1021/acs.molpharmaceut.9b00086. Epub 2019 Apr 29.

PMID:
30994358
10.

Distinct phenotype of CD4+ T cells driving celiac disease identified in multiple autoimmune conditions.

Christophersen A, Lund EG, Snir O, Solà E, Kanduri C, Dahal-Koirala S, Zühlke S, Molberg Ø, Utz PJ, Rohani-Pichavant M, Simard JF, Dekker CL, Lundin KEA, Sollid LM, Davis MM.

Nat Med. 2019 May;25(5):734-737. doi: 10.1038/s41591-019-0403-9. Epub 2019 Mar 25.

PMID:
30911136
11.

A clinically meaningful metric of immune age derived from high-dimensional longitudinal monitoring.

Alpert A, Pickman Y, Leipold M, Rosenberg-Hasson Y, Ji X, Gaujoux R, Rabani H, Starosvetsky E, Kveler K, Schaffert S, Furman D, Caspi O, Rosenschein U, Khatri P, Dekker CL, Maecker HT, Davis MM, Shen-Orr SS.

Nat Med. 2019 Mar;25(3):487-495. doi: 10.1038/s41591-019-0381-y. Epub 2019 Mar 6.

PMID:
30842675
12.

The Kawasaki Disease Comparative Effectiveness (KIDCARE) trial: A phase III, randomized trial of second intravenous immunoglobulin versus infliximab for resistant Kawasaki disease.

Roberts SC, Jain S, Tremoulet AH, Kim KK, Burns JC; KIDCARE Multicenter Study Group, Anand V, Anderson M, Ang J, Ansusinha E, Arditi M, Ashouri N, Bartlett A, Chatterjee A, DeBiasi R, Dekker C, DeZure C, Didion L, Dominguez S, El Feghaly R, Erdem G, Halasa N, Harahsheh A, Jackson MA, Jaggi P, Jain S, Jone PN, Kaushik N, Kurio G, Lillian A, Lloyd D, Manaloor J, McNelis A, Michalik DE, Newburger J, Newcomer C, Perkins T, Portman M, Romero J, Ronis T, Rowley A, Schneider K, Schuster J, Tejtel SKS, Sharma K, Simonsen K, Szmuszkovicz J, Truong D, Wood J, Yeh S.

Contemp Clin Trials. 2019 Apr;79:98-103. doi: 10.1016/j.cct.2019.02.008. Epub 2019 Mar 3.

PMID:
30840903
13.

Discovery and Structural Characterization of ATP-Site Ligands for the Wild-Type and V617F Mutant JAK2 Pseudokinase Domain.

McNally R, Li Q, Li K, Dekker C, Vangrevelinghe E, Jones M, Chène P, Machauer R, Radimerski T, Eck MJ.

ACS Chem Biol. 2019 Apr 19;14(4):587-593. doi: 10.1021/acschembio.8b00722. Epub 2019 Mar 11.

PMID:
30763067
14.

Movement dynamics of divisome proteins and PBP2x:FtsW in cells of Streptococcus pneumoniae.

Perez AJ, Cesbron Y, Shaw SL, Bazan Villicana J, Tsui HT, Boersma MJ, Ye ZA, Tovpeko Y, Dekker C, Holden S, Winkler ME.

Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3211-3220. doi: 10.1073/pnas.1816018116. Epub 2019 Feb 4.

15.

Electro-Mechanical Conductance Modulation of a Nanopore Using a Removable Gate.

Zhao S, Restrepo-Pérez L, Soskine M, Maglia G, Joo C, Dekker C, Aksimentiev A.

ACS Nano. 2019 Feb 26;13(2):2398-2409. doi: 10.1021/acsnano.8b09266. Epub 2019 Feb 8.

PMID:
30715850
16.

A microfluidic platform for the characterisation of membrane active antimicrobials.

Al Nahas K, Cama J, Schaich M, Hammond K, Deshpande S, Dekker C, Ryadnov MG, Keyser UF.

Lab Chip. 2019 Feb 26;19(5):837-844. doi: 10.1039/c8lc00932e.

17.

Signatures of selection in the human antibody repertoire: Selective sweeps, competing subclones, and neutral drift.

Horns F, Vollmers C, Dekker CL, Quake SR.

Proc Natl Acad Sci U S A. 2019 Jan 22;116(4):1261-1266. doi: 10.1073/pnas.1814213116. Epub 2019 Jan 8.

18.

DNA sequence encodes the position of DNA supercoils.

Kim SH, Ganji M, Kim E, van der Torre J, Abbondanzieri E, Dekker C.

Elife. 2018 Dec 7;7. pii: e36557. doi: 10.7554/eLife.36557.

19.

Label-Free Optical Detection of DNA Translocations through Plasmonic Nanopores.

Verschueren DV, Pud S, Shi X, De Angelis L, Kuipers L, Dekker C.

ACS Nano. 2019 Jan 22;13(1):61-70. doi: 10.1021/acsnano.8b06758. Epub 2018 Dec 10.

20.

Intercalating Electron Dyes for TEM Visualization of DNA at the Single-Molecule Level.

Kabiri Y, Angelin A, Ahmed I, Mutlu H, Bauer J, Niemeyer CM, Zandbergen H, Dekker C.

Chembiochem. 2019 Mar 15;20(6):822-830. doi: 10.1002/cbic.201800638. Epub 2019 Feb 7.

21.

Diminished B-Cell Response After Repeat Influenza Vaccination.

Sanyal M, Holmes TH, Maecker HT, Albrecht RA, Dekker CL, He XS, Greenberg HB.

J Infect Dis. 2019 Apr 19;219(10):1586-1595. doi: 10.1093/infdis/jiy685. Erratum in: J Infect Dis. 2019 Apr 19;219(10):1683.

PMID:
30496437
22.

Active Delivery of Single DNA Molecules into a Plasmonic Nanopore for Label-Free Optical Sensing.

Shi X, Verschueren DV, Dekker C.

Nano Lett. 2018 Dec 12;18(12):8003-8010. doi: 10.1021/acs.nanolett.8b04146. Epub 2018 Nov 21.

23.

Mechanically controlled quantum interference in graphene break junctions.

Caneva S, Gehring P, García-Suárez VM, García-Fuente A, Stefani D, Olavarria-Contreras IJ, Ferrer J, Dekker C, van der Zant HSJ.

Nat Nanotechnol. 2018 Dec;13(12):1126-1131. doi: 10.1038/s41565-018-0258-0. Epub 2018 Sep 17.

PMID:
30224794
24.

Paving the way to single-molecule protein sequencing.

Restrepo-Pérez L, Joo C, Dekker C.

Nat Nanotechnol. 2018 Sep;13(9):786-796. doi: 10.1038/s41565-018-0236-6. Epub 2018 Sep 6. Review.

PMID:
30190617
25.

Detection of CRISPR-dCas9 on DNA with Solid-State Nanopores.

Yang W, Restrepo-Pérez L, Bengtson M, Heerema SJ, Birnie A, van der Torre J, Dekker C.

Nano Lett. 2018 Oct 10;18(10):6469-6474. doi: 10.1021/acs.nanolett.8b02968. Epub 2018 Sep 13.

26.

Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging.

Cheung P, Vallania F, Warsinske HC, Donato M, Schaffert S, Chang SE, Dvorak M, Dekker CL, Davis MM, Utz PJ, Khatri P, Kuo AJ.

Cell. 2018 May 31;173(6):1385-1397.e14. doi: 10.1016/j.cell.2018.03.079. Epub 2018 Apr 26.

27.

Reversible Immobilization of Proteins in Sensors and Solid-State Nanopores.

Ananth A, Genua M, Aissaoui N, Díaz L, Eisele NB, Frey S, Dekker C, Richter RP, Görlich D.

Small. 2018 May;14(18):e1703357. doi: 10.1002/smll.201703357. Epub 2018 Apr 3.

28.

On-chip microfluidic production of cell-sized liposomes.

Deshpande S, Dekker C.

Nat Protoc. 2018 May;13(5):856-874. doi: 10.1038/nprot.2017.160. Epub 2018 Mar 29.

PMID:
29599442
29.

Double Barrel Nanopores as a New Tool for Controlling Single-Molecule Transport.

Cadinu P, Campolo G, Pud S, Yang W, Edel JB, Dekker C, Ivanov AP.

Nano Lett. 2018 Apr 11;18(4):2738-2745. doi: 10.1021/acs.nanolett.8b00860. Epub 2018 Mar 28.

30.

Dividing the Archaeal Way: The Ancient Cdv Cell-Division Machinery.

Caspi Y, Dekker C.

Front Microbiol. 2018 Mar 2;9:174. doi: 10.3389/fmicb.2018.00174. eCollection 2018. Review.

31.

DNA origami scaffold for studying intrinsically disordered proteins of the nuclear pore complex.

Ketterer P, Ananth AN, Laman Trip DS, Mishra A, Bertosin E, Ganji M, van der Torre J, Onck P, Dietz H, Dekker C.

Nat Commun. 2018 Mar 2;9(1):902. doi: 10.1038/s41467-018-03313-w.

32.

Probing DNA Translocations with Inplane Current Signals in a Graphene Nanoribbon with a Nanopore.

Heerema SJ, Vicarelli L, Pud S, Schouten RN, Zandbergen HW, Dekker C.

ACS Nano. 2018 Mar 27;12(3):2623-2633. doi: 10.1021/acsnano.7b08635. Epub 2018 Feb 27.

33.

Real-time imaging of DNA loop extrusion by condensin.

Ganji M, Shaltiel IA, Bisht S, Kim E, Kalichava A, Haering CH, Dekker C.

Science. 2018 Apr 6;360(6384):102-105. doi: 10.1126/science.aar7831. Epub 2018 Feb 22.

34.

Mechanical Division of Cell-Sized Liposomes.

Deshpande S, Spoelstra WK, van Doorn M, Kerssemakers J, Dekker C.

ACS Nano. 2018 Mar 27;12(3):2560-2568. doi: 10.1021/acsnano.7b08411. Epub 2018 Feb 22.

35.

Spatial structure of disordered proteins dictates conductance and selectivity in nuclear pore complex mimics.

Ananth AN, Mishra A, Frey S, Dwarkasing A, Versloot R, van der Giessen E, Görlich D, Onck P, Dekker C.

Elife. 2018 Feb 14;7. pii: e31510. doi: 10.7554/eLife.31510.

36.

Plasmablast antibody repertoires in elderly influenza vaccine responders exhibit restricted diversity but increased breadth of binding across influenza strains.

Ju CH, Blum LK, Kongpachith S, Lingampalli N, Mao R, Brodin P, Dekker CL, Davis MM, Robinson WH.

Clin Immunol. 2018 Aug;193:70-79. doi: 10.1016/j.clim.2018.01.011. Epub 2018 Feb 2.

PMID:
29410330
37.

Lithography-based fabrication of nanopore arrays in freestanding SiN and graphene membranes.

Verschueren DV, Yang W, Dekker C.

Nanotechnology. 2018 Apr 6;29(14):145302. doi: 10.1088/1361-6528/aaabce.

38.

Direct observation of end resection by RecBCD during double-stranded DNA break repair in vivo.

Wiktor J, van der Does M, Büller L, Sherratt DJ, Dekker C.

Nucleic Acids Res. 2018 Feb 28;46(4):1821-1833. doi: 10.1093/nar/gkx1290.

39.

Integrating Sub-3 nm Plasmonic Gaps into Solid-State Nanopores.

Shi X, Verschueren D, Pud S, Dekker C.

Small. 2018 May;14(18):e1703307. doi: 10.1002/smll.201703307. Epub 2017 Dec 18.

40.

Catching DNA with hoops-biophysical approaches to clarify the mechanism of SMC proteins.

Eeftens J, Dekker C.

Nat Struct Mol Biol. 2017 Dec 7;24(12):1012-1020. doi: 10.1038/nsmb.3507. Review.

PMID:
29215640
41.

The Dutch version of the self-report Child Activity and Limitations Interview in adolescents with chronic pain.

de Vries JE, Dekker C, Bastiaenen CHG, Goossens MEJB, Engelbert RHH, Verbunt JAMCF.

Disabil Rehabil. 2019 Apr;41(7):833-839. doi: 10.1080/09638288.2017.1407969. Epub 2017 Nov 29.

PMID:
29185366
42.

Tailoring the appearance: what will synthetic cells look like?

Spoelstra WK, Deshpande S, Dekker C.

Curr Opin Biotechnol. 2018 Jun;51:47-56. doi: 10.1016/j.copbio.2017.11.005. Epub 2017 Nov 26. Review.

PMID:
29183001
43.

Accuracy and Discomfort of Different Types of Intranasal Specimen Collection Methods for Molecular Influenza Testing in Emergency Department Patients.

Frazee BW, Rodríguez-Hoces de la Guardia A, Alter H, Chen CG, Fuentes EL, Holzer AK, Lolas M, Mitra D, Vohra J, Dekker CL.

Ann Emerg Med. 2018 Apr;71(4):509-517.e1. doi: 10.1016/j.annemergmed.2017.09.010. Epub 2017 Nov 24.

PMID:
29174837
44.

Real-time detection of condensin-driven DNA compaction reveals a multistep binding mechanism.

Eeftens JM, Bisht S, Kerssemakers J, Kschonsak M, Haering CH, Dekker C.

EMBO J. 2017 Dec 1;36(23):3448-3457. doi: 10.15252/embj.201797596. Epub 2017 Nov 8.

45.

Dynamics of the human antibody repertoire after B cell depletion in systemic sclerosis.

de Bourcy CFA, Dekker CL, Davis MM, Nicolls MR, Quake SR.

Sci Immunol. 2017 Sep 29;2(15). pii: eaan8289. doi: 10.1126/sciimmunol.aan8289.

46.

The condensin complex is a mechanochemical motor that translocates along DNA.

Terakawa T, Bisht S, Eeftens JM, Dekker C, Haering CH, Greene EC.

Science. 2017 Nov 3;358(6363):672-676. doi: 10.1126/science.aan6516. Epub 2017 Sep 7.

47.

SDS-assisted protein transport through solid-state nanopores.

Restrepo-Pérez L, John S, Aksimentiev A, Joo C, Dekker C.

Nanoscale. 2017 Aug 17;9(32):11685-11693. doi: 10.1039/c7nr02450a.

48.

Continuous immunotypes describe human immune variation and predict diverse responses.

Kaczorowski KJ, Shekhar K, Nkulikiyimfura D, Dekker CL, Maecker H, Davis MM, Chakraborty AK, Brodin P.

Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):E6097-E6106. doi: 10.1073/pnas.1705065114. Epub 2017 Jul 10.

49.

Dutch version of the Fear of Pain Questionnaire for adolescents with chronic pain.

Dekker C, Bastiaenen CHG, de Vries JE, Simons LE, Goossens MEJB, Verbunt JAMCF.

Disabil Rehabil. 2018 Jun;40(11):1326-1332. doi: 10.1080/09638288.2017.1289255. Epub 2017 Mar 3.

PMID:
28637153
50.

Distortion of DNA Origami on Graphene Imaged with Advanced TEM Techniques.

Kabiri Y, Ananth AN, van der Torre J, Katan A, Hong JY, Malladi S, Kong J, Zandbergen H, Dekker C.

Small. 2017 Aug;13(31). doi: 10.1002/smll.201700876. Epub 2017 Jun 16.

PMID:
28620911

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