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Items: 44

1.

Insights into the mode of flavin mononucleotide binding and catalytic mechanism of bacterial chromate reductases: A molecular dynamics simulation study.

Pradhan SK, Singh NR, Dehury B, Panda D, Modi MK, Thatoi H.

J Cell Biochem. 2019 May 26. doi: 10.1002/jcb.28960. [Epub ahead of print]

PMID:
31131470
2.

Structural bioinformatics insights into the CARD-CARD interaction mediated by the mitochondrial antiviral-signaling protein of black carp.

Rout AK, Udgata SR, Dehury B, Pradhan SP, Swain HS, Behera BK, Das BK.

J Cell Biochem. 2019 Aug;120(8):12534-12543. doi: 10.1002/jcb.28519. Epub 2019 Mar 25.

PMID:
30912187
3.
4.

Molecular cloning, GTP recognition mechanism and tissue-specific expression profiling of myxovirus resistance (Mx) protein in Labeo rohita (Hamilton) after Poly I:C induction.

Das BK, Roy P, Rout AK, Sahoo DR, Panda SP, Pattanaik S, Dehury B, Behera BK, Mishra SS.

Sci Rep. 2019 Mar 8;9(1):3956. doi: 10.1038/s41598-019-40323-0.

5.

Computing the Pathogenicity of Alzheimer's Disease Presenilin 1 Mutations.

Tang N, Dehury B, Kepp KP.

J Chem Inf Model. 2019 Feb 25;59(2):858-870. doi: 10.1021/acs.jcim.8b00896. Epub 2019 Feb 11.

PMID:
30681848
6.

Structural bioinformatics insights into ATP binding mechanism in zebrafish (Danio rerio) cyclin-dependent kinase-like 5 (zCDKL5) protein.

Rout AK, Mishra J, Dehury B, Maharana J, Acharya V, Karna SK, Parida PK, Behera BK, Das BK.

J Cell Biochem. 2019 Jun;120(6):9437-9447. doi: 10.1002/jcb.28219. Epub 2018 Dec 19.

PMID:
30569538
7.

Novel insights into the dynamics behavior of glucagon-like peptide-1 receptor with its small molecule agonists.

Girdhar K, Dehury B, Kumar Singh M, Daniel VP, Choubey A, Dogra S, Kumar S, Mondal P.

J Biomol Struct Dyn. 2018 Nov 17:1-11. doi: 10.1080/07391102.2018.1532818. [Epub ahead of print]

PMID:
30296922
8.

The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response.

Dikhit MR, Das S, Mahantesh V, Kumar A, Singh AK, Dehury B, Rout AK, Ali V, Sahoo GC, Topno RK, Pandey K, Das VNR, Bimal S, Das P.

Sci Rep. 2018 Sep 21;8(1):14175. doi: 10.1038/s41598-018-32040-x.

9.

Molecular docking and simulation study for synthesis of alternative dapsone derivative as a newer antileprosy drug in multidrug therapy.

Swain SS, Paidesetty SK, Dehury B, Sahoo J, Vedithi SC, Mahapatra N, Hussain T, Padhy RN.

J Cell Biochem. 2018 Dec;119(12):9838-9852. doi: 10.1002/jcb.27304. Epub 2018 Aug 20.

PMID:
30125973
10.

Design and testing of a highly conserved human rotavirus VP8* immunogenic peptide with potential for vaccine development.

Mohanty E, Dehury B, Satapathy AK, Dwibedi B.

J Biotechnol. 2018 Sep 10;281:48-60. doi: 10.1016/j.jbiotec.2018.06.306. Epub 2018 Jun 7.

PMID:
29886031
11.

Mining and comparative survey of EST-SSR markers among members of Euphorbiaceae family.

Sen S, Dehury B, Sahu J, Rathi S, Yadav RNS.

Mol Biol Rep. 2018 Aug;45(4):453-468. doi: 10.1007/s11033-018-4181-0. Epub 2018 Apr 6.

PMID:
29626317
12.

Deep insights into the mode of ATP-binding mechanism in Zebrafish cyclin-dependent protein kinase-like 1 (zCDKL1): A molecular dynamics approach.

Rout AK, Dehury B, Maharana J, Nayak C, Baisvar VS, Behera BK, Das BK.

J Mol Graph Model. 2018 May;81:175-183. doi: 10.1016/j.jmgm.2018.02.002. Epub 2018 Feb 13.

PMID:
29574323
13.

Identification of Potential MHC Class-II-Restricted Epitopes Derived from Leishmania donovani Antigens by Reverse Vaccinology and Evaluation of Their CD4+ T-Cell Responsiveness against Visceral Leishmaniasis.

Dikhit MR, Kumar A, Das S, Dehury B, Rout AK, Jamal F, Sahoo GC, Topno RK, Pandey K, Das VNR, Bimal S, Das P.

Front Immunol. 2017 Dec 14;8:1763. doi: 10.3389/fimmu.2017.01763. eCollection 2017.

14.

Molecular dynamics insights into the structure, function, and substrate binding mechanism of mucin desulfating sulfatase of gut microbe Bacteroides fragilis.

Praharaj AB, Dehury B, Mahapatra N, Kar SK, Behera SK.

J Cell Biochem. 2018 Apr;119(4):3618-3631. doi: 10.1002/jcb.26569. Epub 2018 Jan 5.

PMID:
29232003
15.

Novel Insights into the Molecular Interaction of a Panduratin A Derivative with the Non Structural Protein (NS3) of Dengue Serotypes: A Molecular Dynamics Study.

Parida P, Yadav RNS, Dehury B, Ghosh D, Mahapatra N, Mitra A, Mohanta TK.

Curr Pharm Biotechnol. 2017;18(9):769-782. doi: 10.2174/1389201018666171122122338.

PMID:
29173158
16.
17.

Multidimensional poverty, household environment and short-term morbidity in India.

Dehury B, Mohanty SK.

Genus. 2017;73(1):3. doi: 10.1186/s41118-017-0019-1. Epub 2017 Jun 2.

18.

Mining the Proteome of Leishmania donovani for the Development of Novel MHC Class I Restricted Epitope for the Control of Visceral Leishmaniasis.

Dikhit MR; Vijayamahantesh, Kumar A, Amit A, Dehury B, Nathsharma YP, Ansari MY, Ali V, Topno RK, Das V, Pandey K, Sahoo GC, Bimal S, Das P.

J Cell Biochem. 2018 Jan;119(1):378-391. doi: 10.1002/jcb.26190. Epub 2017 Jun 30.

PMID:
28585770
19.

Molecular Modeling and Dynamics Simulation Analysis of KATNAL1 for Identification of Novel Inhibitor of Sperm Maturation.

Sarma K, Roychoudhury S, Bora SS, Dehury B, Parida P, Das S, Das R, Dohutia C, Nath S, Deb B, Modi MK.

Comb Chem High Throughput Screen. 2017;20(1):82-92. doi: 10.2174/1386207320666170116120104.

PMID:
28093975
20.

Structural dynamics of Casein Kinase I (CKI) from malarial parasite Plasmodium falciparum (Isolate 3D7): Insights from theoretical modelling and molecular simulations.

Dehury B, Behera SK, Mahapatra N.

J Mol Graph Model. 2017 Jan;71:154-166. doi: 10.1016/j.jmgm.2016.11.012. Epub 2016 Nov 21.

PMID:
27923179
21.

Computational prediction and analysis of potential antigenic CTL epitopes in Zika virus: A first step towards vaccine development.

Dikhit MR, Ansari MY, Vijaymahantesh, Kalyani, Mansuri R, Sahoo BR, Dehury B, Amit A, Topno RK, Sahoo GC, Ali V, Bimal S, Das P.

Infect Genet Evol. 2016 Nov;45:187-197. doi: 10.1016/j.meegid.2016.08.037. Epub 2016 Aug 31.

PMID:
27590716
22.

Exploring the role and diversity of mucins in health and disease with special insight into non-communicable diseases.

Behera SK, Praharaj AB, Dehury B, Negi S.

Glycoconj J. 2015 Nov;32(8):575-613. doi: 10.1007/s10719-015-9606-6. Epub 2015 Aug 4. Review.

PMID:
26239922
23.

Structural and functional insights into CARDs of zebrafish (Danio rerio) NOD1 and NOD2, and their interaction with adaptor protein RIP2.

Maharana J, Dehury B, Sahoo JR, Jena I, Bej A, Panda D, Sahoo BR, Patra MC, Pradhan SK.

Mol Biosyst. 2015 Aug;11(8):2324-36. doi: 10.1039/c5mb00212e.

PMID:
26079944
24.

Novel insights into structure-function mechanism and tissue-specific expression profiling of full-length dxr gene from Cymbopogon winterianus.

Devi K, Dehury B, Phukon M, Modi MK, Sen P.

FEBS Open Bio. 2015 Apr 17;5:325-34. doi: 10.1016/j.fob.2015.04.005. eCollection 2015.

25.

Structural models of zebrafish (Danio rerio) NOD1 and NOD2 NACHT domains suggest differential ATP binding orientations: insights from computational modeling, docking and molecular dynamics simulations.

Maharana J, Sahoo BR, Bej A, Jena I, Parida A, Sahoo JR, Dehury B, Patra MC, Martha SR, Balabantray S, Pradhan SK, Behera BK.

PLoS One. 2015 Mar 26;10(3):e0121415. doi: 10.1371/journal.pone.0121415. eCollection 2015.

26.

Molecular recognition of avirulence protein (avrxa5) by eukaryotic transcription factor xa5 of rice (Oryza sativa L.): insights from molecular dynamics simulations.

Dehury B, Maharana J, Sahoo BR, Sahu J, Sen P, Modi MK, Barooah M.

J Mol Graph Model. 2015 Apr;57:49-61. doi: 10.1016/j.jmgm.2015.01.005. Epub 2015 Jan 19.

PMID:
25655560
27.

Community profiling of culturable fluorescent pseudomonads in the rhizosphere of green gram (Vigna radiata L.).

Sarma RK, Gogoi A, Dehury B, Debnath R, Bora TC, Saikia R.

PLoS One. 2014 Oct 3;9(10):e108378. doi: 10.1371/journal.pone.0108378. eCollection 2014.

28.

Structural and functional investigation of zebrafish (Danio rerio) NOD1 leucine rich repeat domain and its interaction with iE-DAP.

Maharana J, Sahoo BR, Bej A, Patra MC, Dehury B, Bhoi GK, Lenka SK, Sahoo JR, Rout AK, Behera BK.

Mol Biosyst. 2014 Nov;10(11):2942-53. doi: 10.1039/c4mb00212a.

PMID:
25137227
29.

Structural and dynamic investigation of bovine folate receptor alpha (FOLR1), and role of ultra-high temperature processing on conformational and thermodynamic characteristics of FOLR1-folate complex.

Sahoo BR, Maharana J, Patra MC, Bhoi GK, Lenka SK, Dubey PK, Goyal S, Dehury B, Pradhan SK.

Colloids Surf B Biointerfaces. 2014 Sep 1;121:307-18. doi: 10.1016/j.colsurfb.2014.05.028. Epub 2014 Jun 23.

PMID:
25023142
30.

Computational insights into the binding mechanism of antagonists with neuropeptide B/W receptor 1.

Patra MC, Maharana J, Dehury B, De S.

Mol Biosyst. 2014 Aug;10(8):2236-46. doi: 10.1039/c4mb00214h.

PMID:
24938207
31.

Structure-based computational study of two disease resistance gene homologues (Hm1 and Hm2) in maize (Zea mays L.) with implications in plant-pathogen interactions.

Dehury B, Patra MC, Maharana J, Sahu J, Sen P, Modi MK, Choudhury MD, Barooah M.

PLoS One. 2014 May 21;9(5):e97852. doi: 10.1371/journal.pone.0097852. eCollection 2014.

32.

Rediscovering medicinal plants' potential with OMICS: microsatellite survey in expressed sequence tags of eleven traditional plants with potent antidiabetic properties.

Sahu J, Sen P, Choudhury MD, Dehury B, Barooah M, Modi MK, Talukdar AD.

OMICS. 2014 May;18(5):298-309. doi: 10.1089/omi.2013.0147.

33.

Computational identification and characterization of conserved miRNAs and their target genes in garlic (Allium sativum L.) expressed sequence tags.

Panda D, Dehury B, Sahu J, Barooah M, Sen P, Modi MK.

Gene. 2014 Mar 10;537(2):333-42. doi: 10.1016/j.gene.2014.01.010. Epub 2014 Jan 13. Erratum in: Gene. 2015 Feb 15;557(1):112.

PMID:
24434367
34.

Structural analysis and molecular dynamics simulations of novel δ-endotoxin Cry1Id from Bacillus thuringiensis to pave the way for development of novel fusion proteins against insect pests of crops.

Dehury B, Sahu M, Sahu J, Sarma K, Sen P, Modi MK, Barooah M, Choudhury MD.

J Mol Model. 2013 Dec;19(12):5301-16. doi: 10.1007/s00894-013-2010-x. Epub 2013 Oct 24.

PMID:
24154610
35.

In silico identification and characterization of conserved miRNAs and their target genes in sweet potato (Ipomoea batatas L.) expressed sequence tags (ESTs).

Dehury B, Panda D, Sahu J, Sahu M, Sarma K, Barooah M, Sen P, Modi M.

Plant Signal Behav. 2013;8(12):e26543. doi: 10.4161/psb.26543. Epub 2013 Sep 25.

36.

Insights into the structure-function relationship of disease resistance protein HCTR in maize (Zea mays L.): a computational structural biology approach.

Dehury B, Sahu M, Patra MC, Sarma K, Sahu J, Sen P, Modi MK, Choudhury MD, Barooah M.

J Mol Graph Model. 2013 Sep;45:50-64. doi: 10.1016/j.jmgm.2013.08.011. Epub 2013 Aug 18.

PMID:
24004829
37.

Molecular phylogeny, homology modeling, and molecular dynamics simulation of race-specific bacterial blight disease resistance protein (xa5) of rice: a comparative agriproteomics approach.

Dehury B, Sahu M, Sarma K, Sahu J, Sen P, Modi MK, Sharma GD, Choudhury MD, Barooah M.

OMICS. 2013 Aug;17(8):423-38. doi: 10.1089/omi.2012.0131. Epub 2013 Jun 11.

38.

A comparative proteomic approach to analyse structure, function and evolution of rice chitinases: a step towards increasing plant fungal resistance.

Sarma K, Dehury B, Sahu J, Sarmah R, Sahoo S, Sahu M, Sen P, Modi MK, Barooah M.

J Mol Model. 2012 Nov;18(11):4761-80. doi: 10.1007/s00894-012-1470-8. Epub 2012 Jun 9.

PMID:
22684798
39.

Mining for SSRs and FDMs from expressed sequence tags of Camellia sinensis.

Sahu J, Sarmah R, Dehury B, Sarma K, Sahoo S, Sahu M, Barooah M, Modi MK, Sen P.

Bioinformation. 2012;8(6):260-6. doi: 10.6026/97320630008260. Epub 2012 Mar 31.

40.

ESMP: A high-throughput computational pipeline for mining SSR markers from ESTs.

Sarmah R, Sahu J, Dehury B, Sarma K, Sahoo S, Sahu M, Barooah M, Sen P, Modi MK.

Bioinformation. 2012;8(4):206-8. doi: 10.6026/97320630008206. Epub 2012 Feb 28.

41.

An approach to delineate primers for a group of poorly conserved sequences incorporating the common motif region.

Sahu M, Sahu J, Sahoo S, Dehury B, Sarma K, Sarmah R, Sen P, Modi MK, Barooah M.

Bioinformation. 2012;8(4):181-4. doi: 10.6026/97320630008181. Epub 2012 Feb 28.

42.

Hydrogeochemical processes controlling the high fluoride concentration in groundwater: a case study at the Boden block area, Orissa, India.

Dey RK, Swain SK, Mishra S, Sharma P, Patnaik T, Singh VK, Dehury BN, Jha U, Patel RK.

Environ Monit Assess. 2012 May;184(5):3279-91. doi: 10.1007/s10661-011-2188-2. Epub 2011 Jun 29.

PMID:
21713470
43.

Impact of urbanization on the groundwater regime in a fast growing city in central India.

Naik PK, Tambe JA, Dehury BN, Tiwari AN.

Environ Monit Assess. 2008 Nov;146(1-3):339-73. doi: 10.1007/s10661-007-0084-6. Epub 2008 Jan 18.

PMID:
18205022
44.

Groundwater pollution around an industrial area in the coastal stretch of Maharashtra State, India.

Naik PK, Dehury BN, Tiwari AN.

Environ Monit Assess. 2007 Sep;132(1-3):207-33. Epub 2006 Dec 14.

PMID:
17171245

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