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Items: 1 to 50 of 289

1.

Endometrial stromal cell proteome mapping in repeated implantation failure and recurrent pregnancy loss cases and fertile women.

Dhaenens L, Lierman S, De Clerck L, Govaert E, Deforce D, Tilleman K, De Sutter P.

Reprod Biomed Online. 2018 Dec 23. pii: S1472-6483(18)30646-1. doi: 10.1016/j.rbmo.2018.11.022. [Epub ahead of print]

PMID:
30612956
2.

Integrative Proteomic Profiling Reveals PRC2-Dependent Epigenetic Crosstalk Maintains Ground-State Pluripotency.

van Mierlo G, Dirks RAM, De Clerck L, Brinkman AB, Huth M, Kloet SL, Saksouk N, Kroeze LI, Willems S, Farlik M, Bock C, Jansen JH, Deforce D, Vermeulen M, Déjardin J, Dhaenens M, Marks H.

Cell Stem Cell. 2019 Jan 3;24(1):123-137.e8. doi: 10.1016/j.stem.2018.10.017. Epub 2018 Nov 21.

PMID:
30472157
3.

Intracellular localisation of platelet-activating factor during mammalian embryo development invitro: a comparison of cattle, mouse and human.

Vandenberghe LTM, Heindryckx B, Smits K, Popovic M, Szymanska K, Bonte D, Peelman L, Deforce D, De Sutter P, Van Soom A, De Schauwer C.

Reprod Fertil Dev. 2018 Nov 21. doi: 10.1071/RD18146. [Epub ahead of print]

PMID:
30458920
4.

TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets.

Decaesteker B, Denecker G, Van Neste C, Dolman EM, Van Loocke W, Gartlgruber M, Nunes C, De Vloed F, Depuydt P, Verboom K, Rombaut D, Loontiens S, De Wyn J, Kholosy WM, Koopmans B, Essing AHW, Herrmann C, Dreidax D, Durinck K, Deforce D, van Nieuwerburgh F, Henssen A, Versteeg R, Boeva V, Schleiermacher G, van Nes J, Mestdagh P, Vanhauwaert S, Schulte JH, Westermann F, Molenaar JJ, De Preter K, Speleman F.

Nat Commun. 2018 Nov 19;9(1):4866. doi: 10.1038/s41467-018-06699-9.

5.

Forensic tri-allelic SNP genotyping using nanopore sequencing.

Cornelis S, Gansemans Y, Vander Plaetsen AS, Weymaere J, Willems S, Deforce D, Van Nieuwerburgh F.

Forensic Sci Int Genet. 2019 Jan;38:204-210. doi: 10.1016/j.fsigen.2018.11.012. Epub 2018 Nov 12.

6.

Plasma Functionalization of Polycaprolactone Nanofibers Changes Protein Interactions with Cells, Resulting in Increased Cell Viability.

Asadian M, Dhaenens M, Onyshchenko I, De Waele S, Declercq H, Cools P, Devreese B, Deforce D, Morent R, De Geyter N.

ACS Appl Mater Interfaces. 2018 Nov 29. doi: 10.1021/acsami.8b14995. [Epub ahead of print]

PMID:
30444341
7.

The transcriptome of the marine calanoid copepod Temora longicornis under heat stress and recovery.

Semmouri I, Asselman J, Van Nieuwerburgh F, Deforce D, Janssen CR, De Schamphelaere KAC.

Mar Environ Res. 2019 Jan;143:10-23. doi: 10.1016/j.marenvres.2018.10.017. Epub 2018 Nov 1.

PMID:
30415781
8.

Estimating the Reliability of Low-Abundant Signals and Limited Replicate Measurements through MS2 Peak Area in SWATH.

Limonier F, Willems S, Waeterloos G, Sneyers M, Dhaenens M, Deforce D.

Proteomics. 2018 Dec;18(24):e1800186. doi: 10.1002/pmic.201800186. Epub 2018 Dec 6.

PMID:
30387297
9.

Candidate Treponema pallidum biomarkers uncovered in urine from individuals with syphilis using mass spectrometry.

Osbak KK, Van Raemdonck GA, Dom M, Cameron CE, Meehan CJ, Deforce D, Ostade XV, Kenyon CR, Dhaenens M.

Future Microbiol. 2018 Oct;13:1497-1510. doi: 10.2217/fmb-2018-0182. Epub 2018 Oct 12.

PMID:
30311792
10.

Transcriptional landscape changes during human embryonic stem cell derivation.

Warrier S, Taelman J, Tilleman L, Van der Jeught M, Duggal G, Lierman S, Popovic M, Van Soom A, Peelman L, Van Nieuwerburgh F, Deforce D, Chuva de Sousa Lopes SM, De Sutter P, Heindryckx B.

Mol Hum Reprod. 2018 Nov 1;24(11):543-555. doi: 10.1093/molehr/gay039.

PMID:
30239859
11.

Influence of microbiota in the susceptibility of parasitic wasps to abamectin insecticide: deep sequencing, esterase and toxicity tests.

Fernández MDM, Meeus I, Billiet A, Van Nieuwerburgh F, Deforce D, Vandamme P, Viñuela E, Smagghe G.

Pest Manag Sci. 2019 Jan;75(1):79-86. doi: 10.1002/ps.5195. Epub 2018 Oct 16.

PMID:
30178524
12.

Transgenerational Inheritance of DNA Hypomethylation in Daphnia magna in Response to Salinity Stress.

Jeremias G, Barbosa J, Marques SM, De Schamphelaere KAC, Van Nieuwerburgh F, Deforce D, Gonçalves FJM, Pereira JL, Asselman J.

Environ Sci Technol. 2018 Sep 4;52(17):10114-10123. doi: 10.1021/acs.est.8b03225. Epub 2018 Aug 24.

PMID:
30113818
13.

Report of the international conference on next generation sequencing for adventitious virus detection in biologicals.

Khan AS, Benetti L, Blumel J, Deforce D, Egan WM, Knezevic I, Krause PR, Mallet L, Mayer D, Minor PD, Neels P, Wang G.

Biologicals. 2018 Sep;55:1-16. doi: 10.1016/j.biologicals.2018.08.002. Epub 2018 Aug 6.

PMID:
30093175
14.

Pre-clinical evaluation of second generation PIM inhibitors for the treatment of T-cell acute lymphoblastic leukemia and lymphoma.

De Smedt R, Peirs S, Morscio J, Matthijssens F, Roels J, Reunes L, Lintermans B, Goossens S, Lammens T, Van Roy N, Touzart A, Jenni S, Tsai YC, Lovisa F, Mussolin L, Serafin V, Van Nieuwerburgh F, Deforce D, Uyttebroeck A, Tousseyn T, Burkhardt B, Klapper W, De Moerloose B, Benoit Y, Macintyre E, Bourquin JP, Basso G, Accordi B, Bornhauser B, Meijerink J, Vandenberghe P, Van Vlierberghe P.

Haematologica. 2019 Jan;104(1):e17-e20. doi: 10.3324/haematol.2018.199257. Epub 2018 Aug 3. No abstract available.

15.

A prokaryotic-eukaryotic relation in the fat body of Bombus terrestris.

Parmentier A, Billiet A, Smagghe G, Vandamme P, Deforce D, Van Nieuwerburgh F, Meeus I.

Environ Microbiol Rep. 2018 Dec;10(6):644-650. doi: 10.1111/1758-2229.12673. Epub 2018 Sep 9.

PMID:
30066470
16.

Skin mucosome activity as an indicator of Batrachochytrium salamandrivorans susceptibility in salamanders.

Smith HK, Pasmans F, Dhaenens M, Deforce D, Bonte D, Verheyen K, Lens L, Martel A.

PLoS One. 2018 Jul 18;13(7):e0199295. doi: 10.1371/journal.pone.0199295. eCollection 2018.

17.

Platelet-activating factor acetylhydrolase 1B3 (PAFAH1B3) is required for the formation of the meiotic spindle during invitro oocyte maturation.

Vandenberghe LTM, Heindryckx B, Smits K, Szymanska K, Ortiz-Escribano N, Ferrer-Buitrago M, Pavani K, Peelman L, Deforce D, De Sutter P, Van Soom A, De Schauwer C.

Reprod Fertil Dev. 2018 Jul 16. doi: 10.1071/RD18019. [Epub ahead of print]

PMID:
30008286
18.

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.

Nishiyama T, Sakayama H, de Vries J, Buschmann H, Saint-Marcoux D, Ullrich KK, Haas FB, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson PKI, Janitza P, Kern R, Heyl A, Rümpler F, Villalobos LIAC, Clay JM, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington AJ, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan GV, Van Nieuwerburgh F, Deforce D, Chang C, Karol KG, Hedrich R, Ulvskov P, Glöckner G, Delwiche CF, Petrášek J, Van de Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theißen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing SA.

Cell. 2018 Jul 12;174(2):448-464.e24. doi: 10.1016/j.cell.2018.06.033.

PMID:
30007417
19.

Reply to the Letter: 'Le Scientisme, c'est la Prétention indue au Monopole de vérité, alors que le Propre de la Science c'est de dire: il n'y a pas de Monopole' (Edgar Morin).

Broeckx BJG, Vezzoni A, Bogaerts E, Bertal M, Bosmans T, Stock E, Deforce D, Peelman L, Saunders JH.

Vet Comp Orthop Traumatol. 2018 Jul;31(4):313-314. doi: 10.1055/s-0038-1653959. Epub 2018 Jul 4. No abstract available.

PMID:
29972848
20.

Multiplex STR amplification sensitivity in a silicon microchip.

Cornelis S, Fauvart M, Gansemans Y, Vander Plaetsen AS, Colle F, Wiederkehr RS, Deforce D, Stakenborg T, Van Nieuwerburgh F.

Sci Rep. 2018 Jun 29;8(1):9853. doi: 10.1038/s41598-018-28229-9.

21.

Genetic characterization and therapeutic targeting of MYC-rearranged T cell acute lymphoblastic leukaemia.

Milani G, Matthijssens F, Van Loocke W, Durinck K, Roels J, Peirs S, Thénoz M, Pieters T, Reunes L, Lintermans B, Vandamme N, Lammens T, Van Roy N, Van Nieuwerburgh F, Deforce D, Schwab C, Raimondi S, Dalla Pozza L, Carroll AJ 3rd, De Moerloose B, Benoit Y, Goossens S, Berx G, Harrison CJ, Basso G, Cavé H, Sutton R, Asnafi V, Meijerink J, Mullighan C, Loh M, Van Vlierberghe P.

Br J Haematol. 2018 Jun 25. doi: 10.1111/bjh.15425. [Epub ahead of print] No abstract available.

PMID:
29938777
22.

Effect of β-adrenergic receptor agents on cardiac structure and function and whole-body gene expression in Daphnia magna.

Jeong TY, Asselman J, De Schamphelaere KAC, Van Nieuwerburgh F, Deforce D, Kim SD.

Environ Pollut. 2018 Oct;241:869-878. doi: 10.1016/j.envpol.2018.06.026. Epub 2018 Jun 12.

PMID:
29913414
23.

The Ontogeny of Cytochrome P450 Enzyme Activity and Protein Abundance in Conventional Pigs in Support of Preclinical Pediatric Drug Research.

Millecam J, De Clerck L, Govaert E, Devreese M, Gasthuys E, Schelstraete W, Deforce D, De Bock L, Van Bocxlaer J, Sys S, Croubels S.

Front Pharmacol. 2018 May 14;9:470. doi: 10.3389/fphar.2018.00470. eCollection 2018.

24.

Proceedings of the EuBIC developer's meeting 2018.

Willems S, Bouyssié D, Deforce D, Dorfer V, Gorshkov V, Kopczynski D, Laukens K, Locard-Paulet M, Schwämmle V, Uszkoreit J, Valkenborg D, Vaudel M, Bittremieux W.

J Proteomics. 2018 Sep 15;187:25-27. doi: 10.1016/j.jprot.2018.05.015. Epub 2018 Jun 2.

PMID:
29864591
25.

Intra- and Inter-observer Variability of Measurements of the Laxity Index on Stress Radiographs Performed with the Vezzoni-Modified Badertscher Hip Distension Device.

Bertal M, Vezzoni A, Houdellier B, Bogaerts E, Stock E, Polis I, Deforce D, Saunders JH, Broeckx BJG.

Vet Comp Orthop Traumatol. 2018 Jul;31(4):246-251. doi: 10.1055/s-0038-1656720. Epub 2018 Jun 2.

PMID:
29859513
26.

Chromosomal mosaicism in human blastocysts: the ultimate challenge of preimplantation genetic testing?

Popovic M, Dheedene A, Christodoulou C, Taelman J, Dhaenens L, Van Nieuwerburgh F, Deforce D, Van den Abbeel E, De Sutter P, Menten B, Heindryckx B.

Hum Reprod. 2018 Jul 1;33(7):1342-1354. doi: 10.1093/humrep/dey106.

PMID:
29796631
27.

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO.

Fraiture MA, Saltykova A, Hoffman S, Winand R, Deforce D, Vanneste K, De Keersmaecker SCJ, Roosens NHC.

Sci Rep. 2018 May 21;8(1):7903. doi: 10.1038/s41598-018-26259-x.

28.

Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes: A comparative evaluation of upstream whole-genome amplification methods.

Deleye L, Gansemans Y, De Coninck D, Van Nieuwerburgh F, Deforce D.

PLoS One. 2018 Apr 26;13(4):e0196334. doi: 10.1371/journal.pone.0196334. eCollection 2018.

29.

Comparative analysis of naive, primed and ground state pluripotency in mouse embryonic stem cells originating from the same genetic background.

Ghimire S, Van der Jeught M, Neupane J, Roost MS, Anckaert J, Popovic M, Van Nieuwerburgh F, Mestdagh P, Vandesompele J, Deforce D, Menten B, Chuva de Sousa Lopes S, De Sutter P, Heindryckx B.

Sci Rep. 2018 Apr 12;8(1):5884. doi: 10.1038/s41598-018-24051-5.

30.

Proteins involved in embryo-maternal interaction around the signalling of maternal recognition of pregnancy in the horse.

Smits K, Willems S, Van Steendam K, Van De Velde M, De Lange V, Ververs C, Roels K, Govaere J, Van Nieuwerburgh F, Peelman L, Deforce D, Van Soom A.

Sci Rep. 2018 Mar 27;8(1):5249. doi: 10.1038/s41598-018-23537-6.

31.

Accurate detection and quantification of epigenetic and genetic second hits in BRCA1 and BRCA2-associated hereditary breast and ovarian cancer reveals multiple co-acting second hits.

Van Heetvelde M, Van Bockstal M, Poppe B, Lambein K, Rosseel T, Atanesyan L, Deforce D, Van Den Berghe I, De Leeneer K, Van Dorpe J, Vral A, Claes KBM.

Cancer Lett. 2018 Jul 1;425:125-133. doi: 10.1016/j.canlet.2018.03.026. Epub 2018 Mar 23.

PMID:
29580810
32.

The Small RNA ncS35 Regulates Growth in Burkholderia cenocepacia J2315.

Kiekens S, Sass A, Van Nieuwerburgh F, Deforce D, Coenye T.

mSphere. 2018 Jan 10;3(1). pii: e00579-17. doi: 10.1128/mSphere.00579-17. eCollection 2018 Jan-Feb.

33.

Short Tandem Repeat analysis after Whole Genome Amplification of single B-lymphoblastoid cells.

Deleye L, Vander Plaetsen AS, Weymaere J, Deforce D, Van Nieuwerburgh F.

Sci Rep. 2018 Jan 19;8(1):1255. doi: 10.1038/s41598-018-19509-5.

34.

Comparison of Three Methods to Quantify Laxity in the Canine Hip Joint.

Broeckx BJG, Vezzoni A, Bogaerts E, Bertal M, Bosmans T, Stock E, Deforce D, Peelman L, Saunders JH.

Vet Comp Orthop Traumatol. 2018 Jan;31(1):23-29. doi: 10.3415/VCOT17-05-0064. Epub 2018 Jan 11.

PMID:
29325189
35.

Microfluidics-based LC-MS MRM approach for the relative quantification of Burkholderia cenocepacia secreted virulence factors.

Depluverez S, Daled S, De Waele S, Planckaert S, Schoovaerts J, Deforce D, Devreese B.

Rapid Commun Mass Spectrom. 2018 Jan 11. doi: 10.1002/rcm.8059. [Epub ahead of print]

PMID:
29322563
36.

The transcriptome of Mycobacterium tuberculosis in a lipid-rich dormancy model through RNAseq analysis.

Aguilar-Ayala DA, Tilleman L, Van Nieuwerburgh F, Deforce D, Palomino JC, Vandamme P, Gonzalez-Y-Merchand JA, Martin A.

Sci Rep. 2017 Dec 15;7(1):17665. doi: 10.1038/s41598-017-17751-x.

37.

Genome-Wide Copy Number Alteration Detection in Preimplantation Genetic Diagnosis.

Deleye L, De Coninck D, Deforce D, Van Nieuwerburgh F.

Methods Mol Biol. 2018;1712:27-42. doi: 10.1007/978-1-4939-7514-3_3.

PMID:
29224066
38.

STR profiling and Copy Number Variation analysis on single, preserved cells using current Whole Genome Amplification methods.

Vander Plaetsen AS, Deleye L, Cornelis S, Tilleman L, Van Nieuwerburgh F, Deforce D.

Sci Rep. 2017 Dec 7;7(1):17189. doi: 10.1038/s41598-017-17525-5.

39.

Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations.

Broeckx BJG, Peelman L, Saunders JH, Deforce D, Clement L.

BMC Bioinformatics. 2017 Dec 1;18(1):535. doi: 10.1186/s12859-017-1951-y.

40.

An exome sequencing based approach for genome-wide association studies in the dog.

Broeckx BJG, Derrien T, Mottier S, Wucher V, Cadieu E, Hédan B, Le Béguec C, Botherel N, Lindblad-Toh K, Saunders JH, Deforce D, André C, Peelman L, Hitte C.

Sci Rep. 2017 Nov 15;7(1):15680. doi: 10.1038/s41598-017-15947-9.

41.

Comparison of fractionation proteomics for local SWATH library building.

Govaert E, Van Steendam K, Willems S, Vossaert L, Dhaenens M, Deforce D.

Proteomics. 2017 Aug;17(15-16). doi: 10.1002/pmic.201700052.

42.

Performance of four modern whole genome amplification methods for copy number variant detection in single cells.

Deleye L, Tilleman L, Vander Plaetsen AS, Cornelis S, Deforce D, Van Nieuwerburgh F.

Sci Rep. 2017 Jun 13;7(1):3422. doi: 10.1038/s41598-017-03711-y.

43.

An integrated strategy combining DNA walking and NGS to detect GMOs.

Fraiture MA, Herman P, Papazova N, De Loose M, Deforce D, Ruttink T, Roosens NH.

Food Chem. 2017 Oct 1;232:351-358. doi: 10.1016/j.foodchem.2017.03.067. Epub 2017 Mar 18.

44.

Direct comparison of distinct naive pluripotent states in human embryonic stem cells.

Warrier S, Van der Jeught M, Duggal G, Tilleman L, Sutherland E, Taelman J, Popovic M, Lierman S, Chuva De Sousa Lopes S, Van Soom A, Peelman L, Van Nieuwerburgh F, De Coninck DIM, Menten B, Mestdagh P, Van de Sompele J, Deforce D, De Sutter P, Heindryckx B.

Nat Commun. 2017 Apr 21;8:15055. doi: 10.1038/ncomms15055.

45.

Infections of virulent and avirulent viruses differentially influenced the expression of dicer-1, ago-1, and microRNAs in Bombus terrestris.

Niu J, Meeus I, De Coninck DI, Deforce D, Etebari K, Asgari S, Smagghe G.

Sci Rep. 2017 Apr 4;7:45620. doi: 10.1038/srep45620.

46.

Metabolic activity, urease production, antibiotic resistance and virulence in dual species biofilms of Staphylococcus epidermidis and Staphylococcus aureus.

Vandecandelaere I, Van Nieuwerburgh F, Deforce D, Coenye T.

PLoS One. 2017 Mar 6;12(3):e0172700. doi: 10.1371/journal.pone.0172700. eCollection 2017.

47.

Phenobarbital or potassium bromide as an add-on antiepileptic drug for the management of canine idiopathic epilepsy refractory to imepitoin.

Royaux E, Van Ham L, Broeckx BJ, Van Soens I, Gielen I, Deforce D, Bhatti SF.

Vet J. 2017 Feb;220:51-54. doi: 10.1016/j.tvjl.2017.01.002. Epub 2017 Jan 4.

PMID:
28190495
48.

Forensic SNP Genotyping using Nanopore MinION Sequencing.

Cornelis S, Gansemans Y, Deleye L, Deforce D, Van Nieuwerburgh F.

Sci Rep. 2017 Feb 3;7:41759. doi: 10.1038/srep41759.

49.

Flagging False Positives Following Untargeted LC-MS Characterization of Histone Post-Translational Modification Combinations.

Willems S, Dhaenens M, Govaert E, De Clerck L, Meert P, Van Neste C, Van Nieuwerburgh F, Deforce D.

J Proteome Res. 2017 Feb 3;16(2):655-664. doi: 10.1021/acs.jproteome.6b00724. Epub 2016 Dec 7.

PMID:
28152592
50.

Epigenetic sampling effects: nephrectomy modifies the clear cell renal cell cancer methylome.

Van Neste C, Laird A, O'Mahony F, Van Criekinge W, Deforce D, Van Nieuwerburgh F, Powles T, Harrison DJ, Stewart GD, De Meyer T.

Cell Oncol (Dordr). 2017 Jun;40(3):293-297. doi: 10.1007/s13402-016-0313-5. Epub 2017 Jan 10.

PMID:
28074387

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