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Items: 1 to 50 of 458

1.

Rapid clearance of Schistosoma mansoni circulating cathodic antigen after treatment shown by urine strip tests in a Ugandan fishing community - Relevance for monitoring treatment efficacy and re-infection.

Kildemoes AO, Vennervald BJ, Tukahebwa EM, Kabatereine NB, Magnussen P, de Dood CJ, Deelder AM, Wilson S, van Dam GJ.

PLoS Negl Trop Dis. 2017 Nov 13;11(11):e0006054. doi: 10.1371/journal.pntd.0006054. eCollection 2017 Nov.

2.

Human Dendritic Cells with Th2-Polarizing Capacity: Analysis Using Label-Free Quantitative Proteomics.

Hussaarts L, Kaisar MMM, Guler AT, Dalebout H, Everts B, Deelder AM, Palmblad M, Yazdanbakhsh M.

Int Arch Allergy Immunol. 2017;174(3-4):170-182. doi: 10.1159/000479512. Epub 2017 Nov 10.

PMID:
29130972
3.

Identification of meat products by shotgun spectral matching.

Ohana D, Dalebout H, Marissen RJ, Wulff T, Bergquist J, Deelder AM, Palmblad M.

Food Chem. 2016 Jul 15;203:28-34. doi: 10.1016/j.foodchem.2016.01.138. Epub 2016 Feb 2.

PMID:
26948585
4.

Differentiating samples and experimental protocols by direct comparison of tandem mass spectra.

van der Plas-Duivesteijn SJ, Wulff T, Klychnikov O, Ohana D, Dalebout H, van Veelen PA, de Keijzer J, Nessen MA, van der Burgt YE, Deelder AM, Palmblad M.

Rapid Commun Mass Spectrom. 2016 Mar 30;30(6):731-8. doi: 10.1002/rcm.7494.

PMID:
26864526
5.

Developments in FTICR-MS and Its Potential for Body Fluid Signatures.

Nicolardi S, Bogdanov B, Deelder AM, Palmblad M, van der Burgt YE.

Int J Mol Sci. 2015 Nov 13;16(11):27133-44. doi: 10.3390/ijms161126012. Review.

6.

N-glycosylation Profiling of Colorectal Cancer Cell Lines Reveals Association of Fucosylation with Differentiation and Caudal Type Homebox 1 (CDX1)/Villin mRNA Expression.

Holst S, Deuss AJ, van Pelt GW, van Vliet SJ, Garcia-Vallejo JJ, Koeleman CA, Deelder AM, Mesker WE, Tollenaar RA, Rombouts Y, Wuhrer M.

Mol Cell Proteomics. 2016 Jan;15(1):124-40. doi: 10.1074/mcp.M115.051235. Epub 2015 Nov 4.

7.

Ethanol contamination of cerebrospinal fluid during standardized sampling and its effect on (1)H-NMR metabolomics.

van der Sar SA, Zielman R, Terwindt GM, van den Maagdenberg AM, Deelder AM, Mayboroda OA, Meissner A, Ferrari MD.

Anal Bioanal Chem. 2015 Jun;407(16):4835-9. doi: 10.1007/s00216-015-8663-9. Epub 2015 May 3.

8.

Glycomic Analysis of Life Stages of the Human Parasite Schistosoma mansoni Reveals Developmental Expression Profiles of Functional and Antigenic Glycan Motifs.

Smit CH, van Diepen A, Nguyen DL, Wuhrer M, Hoffmann KF, Deelder AM, Hokke CH.

Mol Cell Proteomics. 2015 Jul;14(7):1750-69. doi: 10.1074/mcp.M115.048280. Epub 2015 Apr 16.

9.

Quantification of serum apolipoproteins A-I and B-100 in clinical samples using an automated SISCAPA-MALDI-TOF-MS workflow.

van den Broek I, Nouta J, Razavi M, Yip R, Bladergroen MR, Romijn FP, Smit NP, Drews O, Paape R, Suckau D, Deelder AM, van der Burgt YE, Pearson TW, Anderson NL, Cobbaert CM.

Methods. 2015 Jun 15;81:74-85. doi: 10.1016/j.ymeth.2015.03.001. Epub 2015 Mar 9.

PMID:
25766926
10.

Skewed Fc glycosylation profiles of anti-proteinase 3 immunoglobulin G1 autoantibodies from granulomatosis with polyangiitis patients show low levels of bisection, galactosylation, and sialylation.

Wuhrer M, Stavenhagen K, Koeleman CA, Selman MH, Harper L, Jacobs BC, Savage CO, Jefferis R, Deelder AM, Morgan M.

J Proteome Res. 2015 Apr 3;14(4):1657-65. doi: 10.1021/pr500780a. Epub 2015 Mar 24.

PMID:
25761865
11.

Top-down MALDI-in-source decay-FTICR mass spectrometry of isotopically resolved proteins.

Nicolardi S, Switzar L, Deelder AM, Palmblad M, van der Burgt YE.

Anal Chem. 2015 Mar 17;87(6):3429-37. doi: 10.1021/ac504708y. Epub 2015 Mar 5.

PMID:
25719938
12.

Extensive glycosylation of ACPA-IgG variable domains modulates binding to citrullinated antigens in rheumatoid arthritis.

Rombouts Y, Willemze A, van Beers JJ, Shi J, Kerkman PF, van Toorn L, Janssen GM, Zaldumbide A, Hoeben RC, Pruijn GJ, Deelder AM, Wolbink G, Rispens T, van Veelen PA, Huizinga TW, Wuhrer M, Trouw LA, Scherer HU, Toes RE.

Ann Rheum Dis. 2016 Mar;75(3):578-85. doi: 10.1136/annrheumdis-2014-206598. Epub 2015 Jan 13.

PMID:
25587188
13.

Insight in genome-wide association of metabolite quantitative traits by exome sequence analyses.

Demirkan A, Henneman P, Verhoeven A, Dharuri H, Amin N, van Klinken JB, Karssen LC, de Vries B, Meissner A, Göraler S, van den Maagdenberg AM, Deelder AM, C 't Hoen PA, van Duijn CM, van Dijk KW.

PLoS Genet. 2015 Jan 8;11(1):e1004835. doi: 10.1371/journal.pgen.1004835. eCollection 2015 Jan.

14.

N-glycomic profiling as a tool to separate rectal adenomas from carcinomas.

Kaprio T, Satomaa T, Heiskanen A, Hokke CH, Deelder AM, Mustonen H, Hagström J, Carpen O, Saarinen J, Haglund C.

Mol Cell Proteomics. 2015 Feb;14(2):277-88. doi: 10.1074/mcp.M114.041632. Epub 2014 Dec 1.

15.

Towards imaging metabolic pathways in tissues.

Dekker TJ, Jones EA, Corver WE, van Zeijl RJ, Deelder AM, Tollenaar RA, Mesker WE, Morreau H, McDonnell LA.

Anal Bioanal Chem. 2015 Mar;407(8):2167-76. doi: 10.1007/s00216-014-8305-7. Epub 2014 Nov 9.

PMID:
25381617
16.

Case-controlled identification of colorectal cancer based on proteomic profiles and the potential for screening.

Huijbers A, Mesker WE, Mertens BJ, Bladergroen MR, Deelder AM, van der Burgt YE, Tollenaar RA.

Colorectal Dis. 2014 Nov;16(11):907-13. doi: 10.1111/codi.12782.

PMID:
25243779
17.

Serum peptide signatures for pancreatic cancer based on mass spectrometry: a comparison to CA19-9 levels and routine imaging techniques.

Velstra B, Vonk MA, Bonsing BA, Mertens BJ, Nicolardi S, Huijbers A, Vasen H, Deelder AM, Mesker WE, van der Burgt YE, Tollenaar RA.

J Cancer Res Clin Oncol. 2015 Mar;141(3):531-41. doi: 10.1007/s00432-014-1812-2. Epub 2014 Sep 21.

PMID:
25240825
18.

De novo discovery of phenotypic intratumour heterogeneity using imaging mass spectrometry.

Balluff B, Frese CK, Maier SK, Schöne C, Kuster B, Schmitt M, Aubele M, Höfler H, Deelder AM, Heck A Jr, Hogendoorn PC, Morreau J, Maarten Altelaar AF, Walch A, McDonnell LA.

J Pathol. 2015 Jan;235(1):3-13. doi: 10.1002/path.4436. Epub 2014 Nov 3.

PMID:
25201776
19.

Capillary-electrophoresis mass spectrometry for the detection of carbapenemases in (multi-)drug-resistant Gram-negative bacteria.

Fleurbaaij F, Heemskerk AA, Russcher A, Klychnikov OI, Deelder AM, Mayboroda OA, Kuijper EJ, van Leeuwen HC, Hensbergen PJ.

Anal Chem. 2014 Sep 16;86(18):9154-61. doi: 10.1021/ac502049p. Epub 2014 Sep 4.

PMID:
25155175
20.

A metabolomic profile is associated with the risk of incident coronary heart disease.

Vaarhorst AA, Verhoeven A, Weller CM, Böhringer S, Göraler S, Meissner A, Deelder AM, Henneman P, Gorgels AP, van den Brandt PA, Schouten LJ, van Greevenbroek MM, Merry AH, Verschuren WM, van den Maagdenberg AM, van Dijk KW, Isaacs A, Boomsma D, Oostra BA, van Duijn CM, Jukema JW, Boer JM, Feskens E, Heijmans BT, Slagboom PE.

Am Heart J. 2014 Jul;168(1):45-52.e7. doi: 10.1016/j.ahj.2014.01.019. Epub 2014 Apr 4.

21.

Tools for diagnosis, monitoring and screening of Schistosoma infections utilizing lateral-flow based assays and upconverting phosphor labels.

Corstjens PL, De Dood CJ, Kornelis D, Fat EM, Wilson RA, Kariuki TM, Nyakundi RK, Loverde PT, Abrams WR, Tanke HJ, Van Lieshout L, Deelder AM, Van Dam GJ.

Parasitology. 2014 Dec;141(14):1841-55. doi: 10.1017/S0031182014000626. Epub 2014 Jun 16. Review.

22.

Comprehensive gas chromatography-electron ionisation mass spectrometric analysis of fatty acids and sterols using sequential one-pot silylation: quantification and isotopologue analysis.

Kloos DP, Gay E, Lingeman H, Bracher F, Müller C, Mayboroda OA, Deelder AM, Niessen WM, Giera M.

Rapid Commun Mass Spectrom. 2014 Jul 15;28(13):1507-14. doi: 10.1002/rcm.6923.

PMID:
24861601
23.

CE-ESI-MS for bottom-up proteomics: Advances in separation, interfacing and applications.

Heemskerk AA, Deelder AM, Mayboroda OA.

Mass Spectrom Rev. 2016 Mar-Apr;35(2):259-71. doi: 10.1002/mas.21432. Epub 2014 May 23. Review.

PMID:
24852088
24.

High-throughput profiling of protein N-glycosylation by MALDI-TOF-MS employing linkage-specific sialic acid esterification.

Reiding KR, Blank D, Kuijper DM, Deelder AM, Wuhrer M.

Anal Chem. 2014 Jun 17;86(12):5784-93. doi: 10.1021/ac500335t. Epub 2014 May 28.

PMID:
24831253
25.

Structural analysis of an intact monoclonal antibody by online electrochemical reduction of disulfide bonds and Fourier transform ion cyclotron resonance mass spectrometry.

Nicolardi S, Deelder AM, Palmblad M, van der Burgt YE.

Anal Chem. 2014 Jun 3;86(11):5376-82. doi: 10.1021/ac500383c. Epub 2014 May 12.

PMID:
24780057
26.

PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments.

Mohammed Y, Domański D, Jackson AM, Smith DS, Deelder AM, Palmblad M, Borchers CH.

J Proteomics. 2014 Jun 25;106:151-61. doi: 10.1016/j.jprot.2014.04.018. Epub 2014 Apr 22.

PMID:
24769191
27.

Comparative performance of four methods for high-throughput glycosylation analysis of immunoglobulin G in genetic and epidemiological research.

Huffman JE, Pučić-Baković M, Klarić L, Hennig R, Selman MH, Vučković F, Novokmet M, Krištić J, Borowiak M, Muth T, Polašek O, Razdorov G, Gornik O, Plomp R, Theodoratou E, Wright AF, Rudan I, Hayward C, Campbell H, Deelder AM, Reichl U, Aulchenko YS, Rapp E, Wuhrer M, Lauc G.

Mol Cell Proteomics. 2014 Jun;13(6):1598-610. doi: 10.1074/mcp.M113.037465. Epub 2014 Apr 9.

28.

A novel secreted metalloprotease (CD2830) from Clostridium difficile cleaves specific proline sequences in LPXTG cell surface proteins.

Hensbergen PJ, Klychnikov OI, Bakker D, van Winden VJ, Ras N, Kemp AC, Cordfunke RA, Dragan I, Deelder AM, Kuijper EJ, Corver J, Drijfhout JW, van Leeuwen HC.

Mol Cell Proteomics. 2014 May;13(5):1231-44. doi: 10.1074/mcp.M113.034728. Epub 2014 Mar 12.

29.

Binding of von Willebrand factor and plasma proteins to the eggshell of Schistosoma mansoni.

Dewalick S, Hensbergen PJ, Bexkens ML, Grosserichter-Wagener C, Hokke CH, Deelder AM, de Groot PG, Tielens AG, van Hellemond JJ.

Int J Parasitol. 2014 Apr;44(5):263-8. doi: 10.1016/j.ijpara.2013.12.006. Epub 2014 Feb 18.

PMID:
24560918
30.

IgG Fc N-glycosylation in Guillain-Barré syndrome treated with immunoglobulins.

Fokkink WJ, Selman MH, Dortland JR, Durmuş B, Kuitwaard K, Huizinga R, van Rijs W, Tio-Gillen AP, van Doorn PA, Deelder AM, Wuhrer M, Jacobs BC.

J Proteome Res. 2014 Mar 7;13(3):1722-30. doi: 10.1021/pr401213z. Epub 2014 Feb 17.

PMID:
24533874
31.

Total plasma N-glycome changes during pregnancy.

Ruhaak LR, Uh HW, Deelder AM, Dolhain RE, Wuhrer M.

J Proteome Res. 2014 Mar 7;13(3):1657-68. doi: 10.1021/pr401128j. Epub 2014 Feb 25.

PMID:
24527664
32.

Identifying proteins in zebrafish embryos using spectral libraries generated from dissected adult organs and tissues.

van der Plas-Duivesteijn SJ, Mohammed Y, Dalebout H, Meijer A, Botermans A, Hoogendijk JL, Henneman AA, Deelder AM, Spaink HP, Palmblad M.

J Proteome Res. 2014 Mar 7;13(3):1537-44. doi: 10.1021/pr4010585. Epub 2014 Feb 5.

PMID:
24460240
33.

Fibronectin is a serum biomarker for Duchenne muscular dystrophy.

Cynthia Martin F, Hiller M, Spitali P, Oonk S, Dalebout H, Palmblad M, Chaouch A, Guglieri M, Straub V, Lochmüller H, Niks EH, Verschuuren JJ, Aartsma-Rus A, Deelder AM, van der Burgt YE, 't Hoen PA.

Proteomics Clin Appl. 2014 Apr;8(3-4):269-78. doi: 10.1002/prca.201300072. Epub 2014 Mar 11.

PMID:
24458521
34.

A latent Markov modelling approach to the evaluation of circulating cathodic antigen strips for schistosomiasis diagnosis pre- and post-praziquantel treatment in Uganda.

Koukounari A, Donnelly CA, Moustaki I, Tukahebwa EM, Kabatereine NB, Wilson S, Webster JP, Deelder AM, Vennervald BJ, van Dam GJ.

PLoS Comput Biol. 2013;9(12):e1003402. doi: 10.1371/journal.pcbi.1003402. Epub 2013 Dec 19.

35.

Site-specific N-glycosylation analysis of human immunoglobulin e.

Plomp R, Hensbergen PJ, Rombouts Y, Zauner G, Dragan I, Koeleman CA, Deelder AM, Wuhrer M.

J Proteome Res. 2014 Feb 7;13(2):536-46. doi: 10.1021/pr400714w. Epub 2013 Dec 13.

PMID:
24308486
36.

A prominent lack of IgG1-Fc fucosylation of platelet alloantibodies in pregnancy.

Kapur R, Kustiawan I, Vestrheim A, Koeleman CA, Visser R, Einarsdottir HK, Porcelijn L, Jackson D, Kumpel B, Deelder AM, Blank D, Skogen B, Killie MK, Michaelsen TE, de Haas M, Rispens T, van der Schoot CE, Wuhrer M, Vidarsson G.

Blood. 2014 Jan 23;123(4):471-80. doi: 10.1182/blood-2013-09-527978. Epub 2013 Nov 15.

37.

Evaluation of interspecimen trypsin digestion efficiency prior to multiple reaction monitoring-based absolute protein quantification with native protein calibrators.

van den Broek I, Smit NP, Romijn FP, van der Laarse A, Deelder AM, van der Burgt YE, Cobbaert CM.

J Proteome Res. 2013 Dec 6;12(12):5760-74. doi: 10.1021/pr400763d. Epub 2013 Nov 13.

PMID:
24168082
38.

Parallel deep transcriptome and proteome analysis of zebrafish larvae.

Palmblad M, Henkel CV, Dirks RP, Meijer AH, Deelder AM, Spaink HP.

BMC Res Notes. 2013 Oct 24;6:428. doi: 10.1186/1756-0500-6-428.

39.

1H-NMR metabolic profiling of cerebrospinal fluid in patients with complex regional pain syndrome-related dystonia.

Meissner A, van der Plas AA, van Dasselaar NT, Deelder AM, van Hilten JJ, Mayboroda OA.

Pain. 2014 Jan;155(1):190-6. doi: 10.1016/j.pain.2013.10.005. Epub 2013 Oct 11.

PMID:
24120462
40.

Anti-citrullinated protein antibodies acquire a pro-inflammatory Fc glycosylation phenotype prior to the onset of rheumatoid arthritis.

Rombouts Y, Ewing E, van de Stadt LA, Selman MH, Trouw LA, Deelder AM, Huizinga TW, Wuhrer M, van Schaardenburg D, Toes RE, Scherer HU.

Ann Rheum Dis. 2015 Jan;74(1):234-41. doi: 10.1136/annrheumdis-2013-203565. Epub 2013 Oct 8.

PMID:
24106048
41.

Targeted biomarker discovery by high throughput glycosylation profiling of human plasma alpha1-antitrypsin and immunoglobulin A.

Ruhaak LR, Koeleman CA, Uh HW, Stam JC, van Heemst D, Maier AB, Houwing-Duistermaat JJ, Hensbergen PJ, Slagboom PE, Deelder AM, Wuhrer M.

PLoS One. 2013 Sep 9;8(9):e73082. doi: 10.1371/journal.pone.0073082. eCollection 2013.

42.

Authentication of fish products by large-scale comparison of tandem mass spectra.

Wulff T, Nielsen ME, Deelder AM, Jessen F, Palmblad M.

J Proteome Res. 2013 Nov 1;12(11):5253-9. doi: 10.1021/pr4006525. Epub 2013 Oct 15.

PMID:
24032411
43.

On-line electrochemical reduction of disulfide bonds: improved FTICR-CID and -ETD coverage of oxytocin and hepcidin.

Nicolardi S, Giera M, Kooijman P, Kraj A, Chervet JP, Deelder AM, van der Burgt YE.

J Am Soc Mass Spectrom. 2013 Dec;24(12):1980-7. doi: 10.1007/s13361-013-0725-7. Epub 2013 Sep 10.

44.

Association between galactosylation of immunoglobulin G and improvement of rheumatoid arthritis during pregnancy is independent of sialylation.

Bondt A, Selman MH, Deelder AM, Hazes JM, Willemsen SP, Wuhrer M, Dolhain RJ.

J Proteome Res. 2013 Oct 4;12(10):4522-31. doi: 10.1021/pr400589m. Epub 2013 Sep 24.

PMID:
24016253
45.

Investigations on aberrant glycosylation of glycosphingolipids in colorectal cancer tissues using liquid chromatography and matrix-assisted laser desorption time-of-flight mass spectrometry (MALDI-TOF-MS).

Holst S, Stavenhagen K, Balog CI, Koeleman CA, McDonnell LM, Mayboroda OA, Verhoeven A, Mesker WE, Tollenaar RA, Deelder AM, Wuhrer M.

Mol Cell Proteomics. 2013 Nov;12(11):3081-93. doi: 10.1074/mcp.M113.030387. Epub 2013 Jul 22.

46.

A robust dry reagent lateral flow assay for diagnosis of active schistosomiasis by detection of Schistosoma circulating anodic antigen.

van Dam GJ, de Dood CJ, Lewis M, Deelder AM, van Lieshout L, Tanke HJ, van Rooyen LH, Corstjens PL.

Exp Parasitol. 2013 Oct;135(2):274-82. doi: 10.1016/j.exppara.2013.06.017. Epub 2013 Jul 10.

47.

Online spectral library for GC-atmospheric pressure chemical ionization-ToF MS.

Pacchiarotta T, Derks RJ, Hurtado-Fernandez E, van Bezooijen P, Henneman A, Schiewek R, Fernández-Gutiérrez A, Carrasco-Pancorbo A, Deelder AM, Mayboroda OA.

Bioanalysis. 2013 Jun;5(12):1515-25. doi: 10.4155/bio.13.116.

PMID:
23795930
48.

An automated RP-SCX solid-phase extraction procedure for urinary peptidomics biomarker discovery studies.

Balog CI, Derks R, Mayboroda OA, Deelder AM.

Methods Mol Biol. 2013;1023:169-80. doi: 10.1007/978-1-4614-7209-4_11.

PMID:
23765626
49.

Use of expressed sequence tags as an alternative approach for the identification of Taenia solium metacestode excretion/secretion proteins.

Victor B, Dorny P, Kanobana K, Polman K, Lindh J, Deelder AM, Palmblad M, Gabriël S.

BMC Res Notes. 2013 Jun 6;6:224. doi: 10.1186/1756-0500-6-224.

50.

Detection and structural elucidation of esterified oxylipids in human synovial fluid by electrospray ionization-fourier transform ion-cyclotron mass spectrometry and liquid chromatography-ion trap-MS(3): detection of esterified hydroxylated docosapentaenoic acid containing phospholipids.

Jónasdóttir HS, Nicolardi S, Jonker W, Derks R, Palmblad M, Ioan-Facsinay A, Toes R, van der Burgt YE, Deelder AM, Mayboroda OA, Giera M.

Anal Chem. 2013 Jun 18;85(12):6003-10. doi: 10.1021/ac400826z. Epub 2013 May 30.

PMID:
23678963

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