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Items: 1 to 50 of 107

1.

Draft Genome Sequence of Methylocystis heyeri H2T, a Methanotroph with Habitat-Specific Adaptations, Isolated from a Peatland Ecosystem.

Oshkin IY, Miroshnikov KK, Dedysh SN.

Microbiol Resour Announc. 2019 Jul 18;8(29). pii: e00454-19. doi: 10.1128/MRA.00454-19.

2.

Methylotetracoccus oryzae Strain C50C1 Is a Novel Type Ib Gammaproteobacterial Methanotroph Adapted to Freshwater Environments.

Ghashghavi M, Belova SE, Bodelier PLE, Dedysh SN, Kox MAR, Speth DR, Frenzel P, Jetten MSM, Lücker S, Lüke C.

mSphere. 2019 Jun 5;4(3). pii: e00631-18. doi: 10.1128/mSphere.00631-18.

3.

Complete Genome Sequence of the Aerobic Facultative Methanotroph Methylocella tundrae Strain T4.

Kox MAR, Farhan Ul Haque M, van Alen TA, Crombie AT, Jetten MSM, Op den Camp HJM, Dedysh SN, van Kessel MAHJ, Murrell JC.

Microbiol Resour Announc. 2019 May 16;8(20). pii: e00286-19. doi: 10.1128/MRA.00286-19.

4.

Fatty Acid and Hopanoid Adaption to Cold in the Methanotroph Methylovulum psychrotolerans.

Bale NJ, Rijpstra WIC, Sahonero-Canavesi DX, Oshkin IY, Belova SE, Dedysh SN, Sinninghe Damsté JS.

Front Microbiol. 2019 Apr 5;10:589. doi: 10.3389/fmicb.2019.00589. eCollection 2019.

5.

Widespread soil bacterium that oxidizes atmospheric methane.

Tveit AT, Hestnes AG, Robinson SL, Schintlmeister A, Dedysh SN, Jehmlich N, von Bergen M, Herbold C, Wagner M, Richter A, Svenning MM.

Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8515-8524. doi: 10.1073/pnas.1817812116. Epub 2019 Apr 8.

6.

Granulicella sibirica sp. nov., a psychrotolerant acidobacterium isolated from an organic soil layer in forested tundra, West Siberia.

Oshkin IY, Kulichevskaya IS, Rijpstra WIC, Sinninghe Damsté JS, Rakitin AL, Ravin NV, Dedysh SN.

Int J Syst Evol Microbiol. 2019 Apr;69(4):1195-1201. doi: 10.1099/ijsem.0.003290. Epub 2019 Feb 18.

PMID:
30775959
7.

Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands.

Belova SE, Ravin NV, Pankratov TA, Rakitin AL, Ivanova AA, Beletsky AV, Mardanov AV, Sinninghe Damsté JS, Dedysh SN.

Front Microbiol. 2018 Nov 19;9:2775. doi: 10.3389/fmicb.2018.02775. eCollection 2018.

8.

Planctomycetes in boreal and subarctic wetlands: diversity patterns and potential ecological functions.

Dedysh SN, Ivanova AA.

FEMS Microbiol Ecol. 2019 Feb 1;95(2). doi: 10.1093/femsec/fiy227.

PMID:
30476049
9.

Refining the taxonomic structure of the phylum Acidobacteria.

Dedysh SN, Yilmaz P.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3796-3806. doi: 10.1099/ijsem.0.003062. Epub 2018 Oct 16.

PMID:
30325293
10.

Draft Genome Sequence of Methylovulum psychrotolerans Sph1T, an Obligate Methanotroph from Low-Temperature Environments.

Oshkin IY, Miroshnikov KK, Belova SE, Korzhenkov AA, Toshchakov SV, Dedysh SN.

Genome Announc. 2018 Mar 15;6(11). pii: e01488-17. doi: 10.1128/genomeA.01488-17.

11.

Edaphobacter lichenicola sp. nov., a member of the family Acidobacteriaceae from lichen-dominated forested tundra.

Belova SE, Suzina NE, Rijpstra WIC, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2018 Feb 21. doi: 10.1099/ijsem.0.002663. [Epub ahead of print]

PMID:
29465339
12.

Unusual Genomic Traits Suggest Methylocystis bryophila S285 to Be Well Adapted for Life in Peatlands.

Han D, Dedysh SN, Liesack W.

Genome Biol Evol. 2018 Feb 1;10(2):623-628. doi: 10.1093/gbe/evy025.

13.

Genome Analysis of Fimbriiglobus ruber SP5T, a Planctomycete with Confirmed Chitinolytic Capability.

Ravin NV, Rakitin AL, Ivanova AA, Beletsky AV, Kulichevskaya IS, Mardanov AV, Dedysh SN.

Appl Environ Microbiol. 2018 Mar 19;84(7). pii: e02645-17. doi: 10.1128/AEM.02645-17. Print 2018 Apr 1.

14.

Distinct diversity patterns of Planctomycetes associated with the freshwater macrophyte Nuphar lutea (L.) Smith.

Ivanova AA, Philippov DA, Kulichevskaya IS, Dedysh SN.

Antonie Van Leeuwenhoek. 2018 Jun;111(6):811-823. doi: 10.1007/s10482-017-0986-4. Epub 2017 Nov 17.

PMID:
29147807
15.

Metatranscriptomics reveals the hydrolytic potential of peat-inhabiting Planctomycetes.

Ivanova AA, Wegner CE, Kim Y, Liesack W, Dedysh SN.

Antonie Van Leeuwenhoek. 2018 Jun;111(6):801-809. doi: 10.1007/s10482-017-0973-9. Epub 2017 Nov 13.

PMID:
29134393
16.

Tundrisphaera lichenicola gen. nov., sp. nov., a psychrotolerant representative of the family Isosphaeraceae from lichen-dominated tundra soils.

Kulichevskaya IS, Ivanova AA, Detkova EN, Rijpstra WIC, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3583-3589. doi: 10.1099/ijsem.0.002172. Epub 2017 Aug 22.

PMID:
28829024
17.

Pheno- and Genotyping of Hopanoid Production in Acidobacteria.

Damsté JSS, Rijpstra WIC, Dedysh SN, Foesel BU, Villanueva L.

Front Microbiol. 2017 Jun 8;8:968. doi: 10.3389/fmicb.2017.00968. eCollection 2017.

18.

Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil.

Miroshnikov KK, Didriksen A, Naumoff DG, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Mukherjee S, Reddy TBK, Daum C, Shapiro N, Ivanova N, Kyrpides N, Woyke T, Dedysh SN, Svenning MM.

Genome Announc. 2017 Jun 15;5(24). pii: e00504-17. doi: 10.1128/genomeA.00504-17.

19.
20.

High Diversity of Planctomycetes in Soils of Two Lichen-Dominated Sub-Arctic Ecosystems of Northwestern Siberia.

Ivanova AA, Kulichevskaya IS, Merkel AY, Toshchakov SV, Dedysh SN.

Front Microbiol. 2016 Dec 22;7:2065. doi: 10.3389/fmicb.2016.02065. eCollection 2016.

21.

Defining the taxonomic status of described subdivision 3 Acidobacteria: proposal of Bryobacteraceae fam. nov.

Dedysh SN, Kulichevskaya IS, Huber KJ, Overmann J.

Int J Syst Evol Microbiol. 2017 Feb;67(2):498-501. doi: 10.1099/ijsem.0.001687. Epub 2017 Feb 24.

PMID:
27902282
22.

Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov.

Kulichevskaya IS, Ivanova AA, Baulina OI, Rijpstra WI, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2017 Feb;67(2):218-224. doi: 10.1099/ijsem.0.001598. Epub 2017 Mar 16.

PMID:
27902209
23.

A new cell morphotype among methane oxidizers: a spiral-shaped obligately microaerophilic methanotroph from northern low-oxygen environments.

Danilova OV, Suzina NE, Van De Kamp J, Svenning MM, Bodrossy L, Dedysh SN.

ISME J. 2016 Nov;10(11):2734-2743. doi: 10.1038/ismej.2016.48. Epub 2016 Apr 8.

24.

Microbial Community Composition and Methanotroph Diversity of a Subarctic Wetland in Russia.

Danilova OV, Belova SE, Gagarinova IV, Dedysh SN.

Mikrobiologiia. 2016 Sep;85(5):545-554.

PMID:
29364602
25.

Identification of microbial populations driving biopolymer degradation in acidic peatlands by metatranscriptomic analysis.

Ivanova AA, Wegner CE, Kim Y, Liesack W, Dedysh SN.

Mol Ecol. 2016 Oct;25(19):4818-35. doi: 10.1111/mec.13806. Epub 2016 Sep 18.

PMID:
27545292
26.

Emended description of the family Beijerinckiaceae and transfer of the genera Chelatococcus and Camelimonas to the family Chelatococcaceae fam. nov.

Dedysh SN, Haupt ES, Dunfield PF.

Int J Syst Evol Microbiol. 2016 Aug;66(8):3177-82. doi: 10.1099/ijsem.0.001167. Epub 2016 May 19.

PMID:
27199265
27.

[Decline of Activity and Shifts in the Methanotrophic Community Structure of an Ombrotrophic Peat Bog after Wildfire].

Danilova OV, Belova SE, Kulichevskaya IS, Dedysh SN.

Mikrobiologiia. 2015 Sep-Oct;84(5):546-52. Russian.

PMID:
27169243
28.

Methylovulum psychrotolerans sp. nov., a cold-adapted methanotroph from low-temperature terrestrial environments, and emended description of the genus Methylovulum.

Oshkin IY, Belova SE, Danilova OV, Miroshnikov KK, Rijpstra WI, Sinninghe Damsté JS, Liesack W, Dedysh SN.

Int J Syst Evol Microbiol. 2016 Jun;66(6):2417-23. doi: 10.1099/ijsem.0.001046. Epub 2016 Mar 31.

PMID:
27031985
29.

Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov.

Kulichevskaya IS, Ivanova AA, Suzina NE, Rijpstra WIC, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2016 Feb;66(2):837-844. doi: 10.1099/ijsem.0.000799. Epub 2015 Nov 26.

PMID:
26611145
30.

Methylocapsa palsarum sp. nov., a methanotroph isolated from a subArctic discontinuous permafrost ecosystem.

Dedysh SN, Didriksen A, Danilova OV, Belova SE, Liebner S, Svenning MM.

Int J Syst Evol Microbiol. 2015 Oct;65(10):3618-24. doi: 10.1099/ijsem.0.000465.

PMID:
26297585
31.

Abundant Trimethylornithine Lipids and Specific Gene Sequences Are Indicative of Planctomycete Importance at the Oxic/Anoxic Interface in Sphagnum-Dominated Northern Wetlands.

Moore EK, Villanueva L, Hopmans EC, Rijpstra WI, Mets A, Dedysh SN, Sinninghe Damsté JS.

Appl Environ Microbiol. 2015 Sep;81(18):6333-44. doi: 10.1128/AEM.00324-15. Epub 2015 Jul 6.

32.

[Phylogeny of beta-xylanases from Planctomycetes].

Naumoff DG, Ivanova AA, Dedysh SN.

Mol Biol (Mosk). 2014 May-Jun;48(3):508-17. Russian.

33.

Draft Genome Sequence of Methyloferula stellata AR4, an Obligate Methanotroph Possessing Only a Soluble Methane Monooxygenase.

Dedysh SN, Naumoff DG, Vorobev AV, Kyrpides N, Woyke T, Shapiro N, Crombie AT, Murrell JC, Kalyuzhnaya MG, Smirnova AV, Dunfield PF.

Genome Announc. 2015 Mar 5;3(2). pii: e01555-14. doi: 10.1128/genomeA.01555-14.

34.

Planctomicrobium piriforme gen. nov., sp. nov., a stalked planctomycete from a littoral wetland of a boreal lake.

Kulichevskaya IS, Ivanova AA, Detkova EN, Rijpstra WI, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2015 May;65(Pt 5):1659-65. doi: 10.1099/ijs.0.000154. Epub 2015 Feb 27.

PMID:
25724745
35.

[Methanotrophic bacteria in cold seeps of the floodplains of northern rivers].

Belova SÉ, Oshkin IIu, Glagolev MV, Lapshina ED, Maksiutov ShSh, Dedysh SN.

Mikrobiologiia. 2013 Nov-Dec;82(6):732-40. Russian.

PMID:
25509412
36.

[Filterable microbial forms in the Rybinsk water reservoir].

Fedotova AV, Serkebaeva IuM, Sorokin VV, Dedysh SN.

Mikrobiologiia. 2013 Nov-Dec;82(6):715-22. Russian.

PMID:
25509410
37.

[Abundance and diversity of methanotrophic Gammaproteobacteria in northern wetlands].

Danilova OV, Dedysh SN.

Mikrobiologiia. 2014 Mar-Apr;83(2):204-14. Russian.

PMID:
25423724
38.

Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response.

Oshkin IY, Beck DA, Lamb AE, Tchesnokova V, Benuska G, McTaggart TL, Kalyuzhnaya MG, Dedysh SN, Lidstrom ME, Chistoserdova L.

ISME J. 2015 May;9(5):1119-29. doi: 10.1038/ismej.2014.203. Epub 2014 Oct 21.

39.

Gammaproteobacterial methanotrophs dominate cold methane seeps in floodplains of West Siberian rivers.

Oshkin IY, Wegner CE, Lüke C, Glagolev MV, Filippov IV, Pimenov NV, Liesack W, Dedysh SN.

Appl Environ Microbiol. 2014 Oct;80(19):5944-54. doi: 10.1128/AEM.01539-14. Epub 2014 Jul 25.

40.

Methylocella: a gourmand among methanotrophs.

Dunfield PF, Dedysh SN.

Trends Microbiol. 2014 Jul;22(7):368-9. doi: 10.1016/j.tim.2014.05.004. Epub 2014 May 26.

PMID:
24874563
41.

Paludibaculum fermentans gen. nov., sp. nov., a facultative anaerobe capable of dissimilatory iron reduction from subdivision 3 of the Acidobacteria.

Kulichevskaya IS, Suzina NE, Rijpstra WI, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2014 Aug;64(Pt 8):2857-64. doi: 10.1099/ijs.0.066175-0. Epub 2014 May 27.

PMID:
24867171
42.

Descriptions of Roseiarcus fermentans gen. nov., sp. nov., a bacteriochlorophyll a-containing fermentative bacterium related phylogenetically to alphaproteobacterial methanotrophs, and of the family Roseiarcaceae fam. nov.

Kulichevskaya IS, Danilova OV, Tereshina VM, Kevbrin VV, Dedysh SN.

Int J Syst Evol Microbiol. 2014 Aug;64(Pt 8):2558-65. doi: 10.1099/ijs.0.064576-0. Epub 2014 May 8.

PMID:
24812364
43.

Novel mono-, di-, and trimethylornithine membrane lipids in northern wetland planctomycetes.

Moore EK, Hopmans EC, Rijpstra WI, Villanueva L, Dedysh SN, Kulichevskaya IS, Wienk H, Schoutsen F, Sinninghe Damsté JS.

Appl Environ Microbiol. 2013 Nov;79(22):6874-84. doi: 10.1128/AEM.02169-13. Epub 2013 Aug 30.

44.

Pyrosequencing-based assessment of the bacteria diversity in surface and subsurface peat layers of a northern wetland, with focus on poorly studied phyla and candidate divisions.

Serkebaeva YM, Kim Y, Liesack W, Dedysh SN.

PLoS One. 2013 May 21;8(5):e63994. doi: 10.1371/journal.pone.0063994. Print 2013.

45.

Microbiology of wetlands.

Bodelier PL, Dedysh SN.

Front Microbiol. 2013 Apr 5;4:79. doi: 10.3389/fmicb.2013.00079. eCollection 2013. No abstract available.

46.

[Prokaryotic Ultramicroforms in a Sphagnum Peat Bog of Upper Volga Catchment ].

Belova SE, Fedotova AV, Dedysh SN.

Mikrobiologiia. 2012 Sep-Oct;81(5):665-71. Russian. No abstract available.

PMID:
23234078
47.

Methylomonas paludis sp. nov., the first acid-tolerant member of the genus Methylomonas, from an acidic wetland.

Danilova OV, Kulichevskaya IS, Rozova ON, Detkova EN, Bodelier PL, Trotsenko YA, Dedysh SN.

Int J Syst Evol Microbiol. 2013 Jun;63(Pt 6):2282-9. doi: 10.1099/ijs.0.045658-0. Epub 2012 Nov 16.

PMID:
23159751
48.

[A novel filamentous planctomycete of the Isosphaera-Singulisphaera group isolated from a Sphagnum peat bog].

Kulichevskaia IS, Ivanova AA, Belova SE, Dedysh SN.

Mikrobiologiia. 2012 Jul-Aug;81(4):486-92. Russian. No abstract available.

PMID:
23156692
49.

Lateral gene transfer between the Bacteroidetes and Acidobacteria: the case of α-L-rhamnosidases.

Naumoff DG, Dedysh SN.

FEBS Lett. 2012 Nov 2;586(21):3843-51. doi: 10.1016/j.febslet.2012.09.005. Epub 2012 Sep 26.

50.

[Molecular identification of bacteria and archebacteria in acid lakes in Northern regions of Russia].

Fedotova AV, Belova SÉ, Kulichevaskaia IS, Dedysh SN.

Mikrobiologiia. 2012 May-Jun;81(3):306-13. Russian. No abstract available.

PMID:
22880391

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