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Items: 21

1.

American Gut: an Open Platform for Citizen Science Microbiome Research.

McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium , Knight R.

mSystems. 2018 May 15;3(3). pii: e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.

2.

Best practices for analysing microbiomes.

Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn RA, Sanders JG, Swafford AD, Thompson LR, Tripathi A, Xu ZZ, Zaneveld JR, Zhu Q, Caporaso JG, Dorrestein PC.

Nat Rev Microbiol. 2018 Jul;16(7):410-422. doi: 10.1038/s41579-018-0029-9. Review.

PMID:
29795328
3.

Publisher Correction: The gut-liver axis and the intersection with the microbiome.

Tripathi A, Debelius J, Brenner DA, Karin M, Loomba R, Schnabl B, Knight R.

Nat Rev Gastroenterol Hepatol. 2018 May 21. doi: 10.1038/s41575-018-0031-8. [Epub ahead of print]

PMID:
29785003
4.

The gut-liver axis and the intersection with the microbiome.

Tripathi A, Debelius J, Brenner DA, Karin M, Loomba R, Schnabl B, Knight R.

Nat Rev Gastroenterol Hepatol. 2018 Jul;15(7):397-411. doi: 10.1038/s41575-018-0011-z. Review. Erratum in: Nat Rev Gastroenterol Hepatol. 2018 May 21;:.

PMID:
29748586
5.

Impacts of the Human Gut Microbiome on Therapeutics.

Vázquez-Baeza Y, Callewaert C, Debelius J, Hyde E, Marotz C, Morton JT, Swafford A, Vrbanac A, Dorrestein PC, Knight R.

Annu Rev Pharmacol Toxicol. 2018 Jan 6;58:253-270. doi: 10.1146/annurev-pharmtox-042017-031849. Epub 2017 Oct 2.

PMID:
28968189
6.

Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models.

Cekanaviciute E, Yoo BB, Runia TF, Debelius JW, Singh S, Nelson CA, Kanner R, Bencosme Y, Lee YK, Hauser SL, Crabtree-Hartman E, Sand IK, Gacias M, Zhu Y, Casaccia P, Cree BAC, Knight R, Mazmanian SK, Baranzini SE.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10713-10718. doi: 10.1073/pnas.1711235114. Epub 2017 Sep 11. Erratum in: Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):E8943.

7.

An Elegan(t) Screen for Drug-Microbe Interactions.

Vrbanac A, Debelius JW, Jiang L, Morton JT, Dorrestein P, Knight R.

Cell Host Microbe. 2017 May 10;21(5):555-556. doi: 10.1016/j.chom.2017.04.014.

8.

The Microbiome and Human Biology.

Knight R, Callewaert C, Marotz C, Hyde ER, Debelius JW, McDonald D, Sogin ML.

Annu Rev Genomics Hum Genet. 2017 Aug 31;18:65-86. doi: 10.1146/annurev-genom-083115-022438. Epub 2017 Mar 20. Review.

PMID:
28375652
9.

Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping.

Amir A, McDonald D, Navas-Molina JA, Debelius J, Morton JT, Hyde E, Robbins-Pianka A, Knight R.

mSystems. 2017 Mar 7;2(2). pii: e00199-16. doi: 10.1128/mSystems.00199-16. eCollection 2017 Mar-Apr.

10.

Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome.

Hill-Burns EM, Debelius JW, Morton JT, Wissemann WT, Lewis MR, Wallen ZD, Peddada SD, Factor SA, Molho E, Zabetian CP, Knight R, Payami H.

Mov Disord. 2017 May;32(5):739-749. doi: 10.1002/mds.26942. Epub 2017 Feb 14.

11.

Intestinal adaptation in proximal and distal segments: Two epithelial responses diverge after intestinal separation.

Schall KA, Holoyda KA, Isani M, Schlieve C, Salisbury T, Khuu T, Debelius JW, Moats RA, Pollack HA, Lien CL, Fowler K, Hou X, Knight R, Grikscheit TC.

Surgery. 2017 Apr;161(4):1016-1027. doi: 10.1016/j.surg.2016.10.033. Epub 2016 Dec 20.

PMID:
28011012
12.

Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease.

Sampson TR, Debelius JW, Thron T, Janssen S, Shastri GG, Ilhan ZE, Challis C, Schretter CE, Rocha S, Gradinaru V, Chesselet MF, Keshavarzian A, Shannon KM, Krajmalnik-Brown R, Wittung-Stafshede P, Knight R, Mazmanian SK.

Cell. 2016 Dec 1;167(6):1469-1480.e12. doi: 10.1016/j.cell.2016.11.018.

13.

Tiny microbes, enormous impacts: what matters in gut microbiome studies?

Debelius J, Song SJ, Vazquez-Baeza Y, Xu ZZ, Gonzalez A, Knight R.

Genome Biol. 2016 Oct 19;17(1):217. Review.

14.

Heritable components of the human fecal microbiome are associated with visceral fat.

Beaumont M, Goodrich JK, Jackson MA, Yet I, Davenport ER, Vieira-Silva S, Debelius J, Pallister T, Mangino M, Raes J, Knight R, Clark AG, Ley RE, Spector TD, Bell JT.

Genome Biol. 2016 Sep 26;17(1):189.

15.

Microbiome-wide association studies link dynamic microbial consortia to disease.

Gilbert JA, Quinn RA, Debelius J, Xu ZZ, Morton J, Garg N, Jansson JK, Dorrestein PC, Knight R.

Nature. 2016 Jul 7;535(7610):94-103. doi: 10.1038/nature18850. Review.

PMID:
27383984
16.

The pediatric intestinal mucosal microbiome remains altered after clinical resolution of inflammatory and ischemic disease.

Wieck MM, Debelius JW, Spurrier RG, Trecartin A, Knight R, Grikscheit TC.

Surgery. 2016 Aug;160(2):350-8. doi: 10.1016/j.surg.2016.05.005. Epub 2016 Jun 11.

PMID:
27302104
17.

Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project.

Debelius JW, Vázquez-Baeza Y, McDonald D, Xu Z, Wolfe E, Knight R.

J Microbiol Biol Educ. 2016 Mar 1;17(1):46-50. doi: 10.1128/jmbe.v17i1.1034. eCollection 2016 Mar.

18.

Towards large-cohort comparative studies to define the factors influencing the gut microbial community structure of ASD patients.

McDonald D, Hornig M, Lozupone C, Debelius J, Gilbert JA, Knight R.

Microb Ecol Health Dis. 2015 Mar 9;26:26555. doi: 10.3402/mehd.v26.26555. eCollection 2015.

19.

Microbial endocrinology: the interplay between the microbiota and the endocrine system.

Neuman H, Debelius JW, Knight R, Koren O.

FEMS Microbiol Rev. 2015 Jul;39(4):509-21. doi: 10.1093/femsre/fuu010. Epub 2015 Feb 19. Review.

PMID:
25701044
20.

Specialized metabolites from the microbiome in health and disease.

Sharon G, Garg N, Debelius J, Knight R, Dorrestein PC, Mazmanian SK.

Cell Metab. 2014 Nov 4;20(5):719-730. doi: 10.1016/j.cmet.2014.10.016. Epub 2014 Nov 4.

21.

HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats.

Lin P, Bach M, Asquith M, Lee AY, Akileswaran L, Stauffer P, Davin S, Pan Y, Cambronne ED, Dorris M, Debelius JW, Lauber CL, Ackermann G, Baeza YV, Gill T, Knight R, Colbert RA, Taurog JD, Van Gelder RN, Rosenbaum JT.

PLoS One. 2014 Aug 20;9(8):e105684. doi: 10.1371/journal.pone.0105684. eCollection 2014.

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