Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 91

1.

Interlaboratory Evaluation of the U.S. Food and Drug Administration Escherichia coli Identification Microarray for Profiling Shiga Toxin-Producing Escherichia coli.

Patel IR, Gangiredla J, Lacher DW, Mammel MK, Bagi L, Baranzoni GM, Fratamico PM, Roberts EL, DebROY C, Lindsey RL, V Stoneburg D, Martin H, Smith P, Strockbine NA, Elkins CA, Scheutz F, Feng PCH.

J Food Prot. 2018 Aug;81(8):1275-1282. doi: 10.4315/0362-028X.JFP-18-052.

2.

Molecular serogrouping of Escherichia coli.

DebRoy C, Fratamico PM, Roberts E.

Anim Health Res Rev. 2018 Feb 22:1-16. doi: 10.1017/S1466252317000093. [Epub ahead of print]

PMID:
29467055
3.

Comparative genomics of two super-shedder isolates of Escherichia coli O157:H7.

Katani R, Cote R, Kudva IT, DebRoy C, Arthur TM, Kapur V.

PLoS One. 2017 Aug 10;12(8):e0182940. doi: 10.1371/journal.pone.0182940. eCollection 2017.

4.

Association of Atypical Enteropathogenic Escherichia coli with Diarrhea and Related Mortality in Kittens.

Watson VE, Jacob ME, Flowers JR, Strong SJ, DebRoy C, Gookin JL.

J Clin Microbiol. 2017 Sep;55(9):2719-2735. doi: 10.1128/JCM.00403-17. Epub 2017 Jun 28.

5.

Prevalence and Phylogenetic Characterization of Escherichia coli and Hygiene Indicator Bacteria Isolated from Leafy Green Produce, Beef, and Pork Obtained from Farmers' Markets in Pennsylvania.

Scheinberg JA, Dudley EG, Campbell J, Roberts B, DiMarzio M, DebRoy C, Cutter CN.

J Food Prot. 2017 Feb;80(2):237-244. doi: 10.4315/0362-028X.JFP-16-282.

PMID:
28221988
6.

Captive and free-living urban pigeons (Columba livia) from Brazil as carriers of multidrug-resistant pathogenic Escherichia coli.

Borges CA, Maluta RP, Beraldo LG, Cardozo MV, Guastalli EAL, Kariyawasam S, DebRoy C, Ávila FA.

Vet J. 2017 Jan;219:65-67. doi: 10.1016/j.tvjl.2016.12.015. Epub 2016 Dec 27.

PMID:
28093116
7.

Editorial: Emerging Approaches for Typing, Detection, Characterization, and Traceback of Escherichia coli.

Fratamico PM, DebRoy C, Needleman DS.

Front Microbiol. 2016 Dec 27;7:2089. doi: 10.3389/fmicb.2016.02089. eCollection 2016. No abstract available.

8.

Multidrug-resistant pathogenic Escherichia coli isolated from wild birds in a veterinary hospital.

Borges CA, Beraldo LG, Maluta RP, Cardozo MV, Barboza KB, Guastalli EA, Kariyawasam S, DebRoy C, Ávila FA.

Avian Pathol. 2017 Feb;46(1):76-83. doi: 10.1080/03079457.2016.1209298. Epub 2016 Oct 18.

PMID:
27754714
9.

Household Clustering of Escherichia coli Sequence Type 131 Clinical and Fecal Isolates According to Whole Genome Sequence Analysis.

Johnson JR, Davis G, Clabots C, Johnston BD, Porter S, DebRoy C, Pomputius W, Ender PT, Cooperstock M, Slater BS, Banerjee R, Miller S, Kisiela D, Sokurenko EV, Aziz M, Price LB.

Open Forum Infect Dis. 2016 Jun 16;3(3):ofw129. eCollection 2016 Sep.

10.

Advances in Molecular Serotyping and Subtyping of Escherichia coli.

Fratamico PM, DebRoy C, Liu Y, Needleman DS, Baranzoni GM, Feng P.

Front Microbiol. 2016 May 3;7:644. doi: 10.3389/fmicb.2016.00644. eCollection 2016. Review.

11.

Development of an indirect ELISA for bovine mastitis using Sip protein of Streptococcus agalactiae.

Bu RE, Wang JL, DebRoy C, Wu JH, Xi LG, Liu Y, Shen ZQ.

Iran J Vet Res. 2015 Summer;16(3):283-7.

12.

Correction: Comparison of O-Antigen Gene Clusters of All O-Serogroups of Escherichia coli and Proposal for Adopting a New Nomenclature for O-Typing.

DebRoy C, Fratamico PM, Yan X, Baranzoni G, Liu Y, Needleman DS, Tebbs R, O'Connell CD, Allred A, Swimley M, Mwangi M, Kapur V, Garay JA, Roberts EL, Katani R.

PLoS One. 2016 Apr 27;11(4):e0154551. doi: 10.1371/journal.pone.0154551. eCollection 2016.

13.

Rapid Detection of Escherichia coli O157 and Shiga Toxins by Lateral Flow Immunoassays.

Wang J, Katani R, Li L, Hegde N, Roberts EL, Kapur V, DebRoy C.

Toxins (Basel). 2016 Mar 25;8(4):92. doi: 10.3390/toxins8040092.

14.

Potential pathogens, antimicrobial patterns and genotypic diversity of Escherichia coli isolates in constructed wetlands treating swine wastewater.

Ibekwe AM, Murinda SE, DebRoy C, Reddy GB.

FEMS Microbiol Ecol. 2016 Feb;92(2). pii: fiw006. doi: 10.1093/femsec/fiw006. Epub 2016 Jan 10.

PMID:
26839381
15.

Comparison of O-Antigen Gene Clusters of All O-Serogroups of Escherichia coli and Proposal for Adopting a New Nomenclature for O-Typing.

DebRoy C, Fratamico PM, Yan X, Baranzoni G, Liu Y, Needleman DS, Tebbs R, O'Connell CD, Allred A, Swimley M, Mwangi M, Kapur V, Raygoza Garay JA, Roberts EL, Katani R.

PLoS One. 2016 Jan 29;11(1):e0147434. doi: 10.1371/journal.pone.0147434. eCollection 2016. Erratum in: PLoS One. 2016;11(4):e0154551.

16.

Whole genome sequencing of diverse Shiga toxin-producing and non-producing Escherichia coli strains reveals a variety of virulence and novel antibiotic resistance plasmids.

Losada L, DebRoy C, Radune D, Kim M, Sanka R, Brinkac L, Kariyawasam S, Shelton D, Fratamico PM, Kapur V, Feng PC.

Plasmid. 2016 Jan;83:8-11. doi: 10.1016/j.plasmid.2015.12.001. Epub 2015 Dec 31.

PMID:
26746359
17.

Characterizing the pathotype of neonatal meningitis causing Escherichia coli (NMEC).

Wijetunge DS, Gongati S, DebRoy C, Kim KS, Couraud PO, Romero IA, Weksler B, Kariyawasam S.

BMC Microbiol. 2015 Oct 14;15:211. doi: 10.1186/s12866-015-0547-9.

18.

Complete Genome Sequence of SS52, a Strain of Escherichia coli O157:H7 Recovered from Supershedder Cattle.

Katani R, Cote R, Raygoza Garay JA, Li L, Arthur TM, DebRoy C, Mwangi MM, Kapur V.

Genome Announc. 2015 Mar 19;3(2). pii: e01569-14. doi: 10.1128/genomeA.01569-14.

19.

Escherichia coli O-Antigen Gene Clusters of Serogroups O62, O68, O131, O140, O142, and O163: DNA Sequences and Similarity between O62 and O68, and PCR-Based Serogrouping.

Liu Y, Yan X, DebRoy C, Fratamico PM, Needleman DS, Li RW, Wang W, Losada L, Brinkac L, Radune D, Toro M, Hegde N, Meng J.

Biosensors (Basel). 2015 Feb 5;5(1):51-68. doi: 10.3390/bios5010051.

20.

Comparative analysis of super-shedder strains of Escherichia coli O157:H7 reveals distinctive genomic features and a strongly aggregative adherent phenotype on bovine rectoanal junction squamous epithelial cells.

Cote R, Katani R, Moreau MR, Kudva IT, Arthur TM, DebRoy C, Mwangi MM, Albert I, Raygoza Garay JA, Li L, Brandl MT, Carter MQ, Kapur V.

PLoS One. 2015 Feb 9;10(2):e0116743. doi: 10.1371/journal.pone.0116743. eCollection 2015.

21.

Investigation and control of an attaching and effacing Escherichia coli outbreak in a colony of captive budgerigars (Melopsittacus undulatus).

Seeley KE, Baitchman E, Bartlett S, DebRoy C, Garner MM.

J Zoo Wildl Med. 2014 Dec;45(4):875-82.

PMID:
25632676
22.

Histiocytic typhlocolitis in two colony Beagle dogs.

Carvallo FR, Kerlin R, Fredette C, Pisharath H, DebRoy C, Kariyawasam S, Pardo ID.

Exp Toxicol Pathol. 2015 Feb;67(2):219-21. doi: 10.1016/j.etp.2014.10.004. Epub 2014 Nov 20.

PMID:
25467750
23.

Complete nucleotide sequence of pRS218, a large virulence plasmid, that augments pathogenic potential of meningitis-associated Escherichia coli strain RS218.

Wijetunge DS, Karunathilake KH, Chaudhari A, Katani R, Dudley EG, Kapur V, DebRoy C, Kariyawasam S.

BMC Microbiol. 2014 Aug 28;14:203. doi: 10.1186/s12866-014-0203-9.

24.

Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States.

Sanjar F, Hazen TH, Shah SM, Koenig SS, Agrawal S, Daugherty S, Sadzewicz L, Tallon LJ, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Cebula TA, Ravel J, Fraser CM, Rasko DA, Eppinger M.

Genome Announc. 2014 Jan 9;2(1). pii: e01120-13. doi: 10.1128/genomeA.01120-13.

25.

Fatal pneumonia caused by Extraintestinal Pathogenic Escherichia coli (ExPEC) in a juvenile cat recovered from an animal hoarding incident.

Brooks JW, Roberts EL, Kocher K, Kariyawasam S, DebRoy C.

Vet Microbiol. 2013 Dec 27;167(3-4):704-7. doi: 10.1016/j.vetmic.2013.08.015. Epub 2013 Aug 27.

PMID:
24041770
26.

The evolutionary divergence of Shiga toxin-producing Escherichia coli is reflected in clustered regularly interspaced short palindromic repeat (CRISPR) spacer composition.

Yin S, Jensen MA, Bai J, Debroy C, Barrangou R, Dudley EG.

Appl Environ Microbiol. 2013 Sep;79(18):5710-20. doi: 10.1128/AEM.00950-13. Epub 2013 Jul 12.

27.

Presence of Shiga toxin-producing Escherichia coli O-groups in small and very-small beef-processing plants and resulting ground beef detected by a multiplex polymerase chain reaction assay.

Svoboda AL, Dudley EG, Debroy C, Mills EW, Cutter CN.

Foodborne Pathog Dis. 2013 Sep;10(9):789-95. doi: 10.1089/fpd.2012.1445. Epub 2013 Jun 6.

PMID:
23742295
28.

A high-throughput antibody-based microarray typing platform.

Gehring A, Barnett C, Chu T, DebRoy C, D'Souza D, Eaker S, Fratamico P, Gillespie B, Hegde N, Jones K, Lin J, Oliver S, Paoli G, Perera A, Uknalis J.

Sensors (Basel). 2013 May 3;13(5):5737-48. doi: 10.3390/s130505737.

29.

Rapid O serogroup identification of the six clinically relevant Shiga toxin-producing Escherichia coli by antibody microarray.

Hegde NV, Praul C, Gehring A, Fratamico P, Debroy C.

J Microbiol Methods. 2013 Jun;93(3):273-6. doi: 10.1016/j.mimet.2013.03.024. Epub 2013 Apr 6.

PMID:
23570904
30.

Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains.

Eppinger M, Daugherty S, Agrawal S, Galens K, Sengamalay N, Sadzewicz L, Tallon L, Cebula TA, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Fraser CM, Ravel J.

Genome Announc. 2013 Feb 28;1(2):e0013412. doi: 10.1128/genomeA.00134-12.

31.

Incidence of Shiga toxin-producing Escherichia coli strains in beef, pork, chicken, deer, boar, bison, and rabbit retail meat.

Magwedere K, Dang HA, Mills EW, Cutter CN, Roberts EL, DeBroy C.

J Vet Diagn Invest. 2013 Mar;25(2):254-8. doi: 10.1177/1040638713477407.

PMID:
23512921
32.

Identification and characterization of spontaneous deletions within the Sp11-Sp12 prophage region of Escherichia coli O157:H7 Sakai.

Chen C, Lewis CR, Goswami K, Roberts EL, DebRoy C, Dudley EG.

Appl Environ Microbiol. 2013 Mar;79(6):1934-41. doi: 10.1128/AEM.03682-12. Epub 2013 Jan 11.

33.

Abrupt emergence of a single dominant multidrug-resistant strain of Escherichia coli.

Johnson JR, Tchesnokova V, Johnston B, Clabots C, Roberts PL, Billig M, Riddell K, Rogers P, Qin X, Butler-Wu S, Price LB, Aziz M, Nicolas-Chanoine MH, Debroy C, Robicsek A, Hansen G, Urban C, Platell J, Trott DJ, Zhanel G, Weissman SJ, Cookson BT, Fang FC, Limaye AP, Scholes D, Chattopadhyay S, Hooper DC, Sokurenko EV.

J Infect Dis. 2013 Mar 15;207(6):919-28. doi: 10.1093/infdis/jis933. Epub 2013 Jan 3.

34.

Detection of the top six non-O157 Shiga toxin-producing Escherichia coli O groups by ELISA.

Hegde NV, Cote R, Jayarao BM, Muldoon M, Lindpaintner K, Kapur V, Debroy C.

Foodborne Pathog Dis. 2012 Nov;9(11):1044-8. doi: 10.1089/fpd.2012.1231.

PMID:
23134286
35.

Rapid detection of the top six non-O157 Shiga toxin-producing Escherichia coli O groups in ground beef by flow cytometry.

Hegde NV, Jayarao BM, DebRoy C.

J Clin Microbiol. 2012 Jun;50(6):2137-9. doi: 10.1128/JCM.00137-12. Epub 2012 Apr 4.

36.

Genetic diversity of locus of enterocyte effacement genes of enteropathogenic Escherichia coli isolated from Peruvian children.

Contreras CA, Ochoa TJ, Ruiz J, Lacher DW, Durand D, DebRoy C, Lanata CF, Cleary TG.

J Med Microbiol. 2012 Aug;61(Pt 8):1114-20. doi: 10.1099/jmm.0.045443-0. Epub 2012 Apr 5.

37.

Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae.

Johnson TJ, Bielak EM, Fortini D, Hansen LH, Hasman H, Debroy C, Nolan LK, Carattoli A.

Plasmid. 2012 Jul;68(1):43-50. doi: 10.1016/j.plasmid.2012.03.001. Epub 2012 Mar 26.

PMID:
22470007
38.

Comparison of Escherichia coli ST131 pulsotypes, by epidemiologic traits, 1967-2009.

Johnson JR, Nicolas-Chanoine MH, DebRoy C, Castanheira M, Robicsek A, Hansen G, Weissman S, Urban C, Platell J, Trott D, Zhanel G, Clabots C, Johnston BD, Kuskowski MA; MASTER Investigators.

Emerg Infect Dis. 2012 Apr;18(4):598-607. doi: 10.3201/eid1804.111627.

39.

Detection of O antigens in Escherichia coli.

DebRoy C, Roberts E, Fratamico PM.

Anim Health Res Rev. 2011 Dec;12(2):169-85. doi: 10.1017/S1466252311000193. Review.

PMID:
22152292
40.

Associations between multidrug resistance, plasmid content, and virulence potential among extraintestinal pathogenic and commensal Escherichia coli from humans and poultry.

Johnson TJ, Logue CM, Johnson JR, Kuskowski MA, Sherwood JS, Barnes HJ, DebRoy C, Wannemuehler YM, Obata-Yasuoka M, Spanjaard L, Nolan LK.

Foodborne Pathog Dis. 2012 Jan;9(1):37-46. doi: 10.1089/fpd.2011.0961. Epub 2011 Oct 11.

41.
42.

Molecular typing of Escherichia coli strains associated with threatened sea ducks and near-shore marine habitats of south-west Alaska.

Hollmén TE, Debroy C, Flint PL, Safine DE, Schamber JL, Riddle AE, Trust KA.

Environ Microbiol Rep. 2011 Apr;3(2):262-9. doi: 10.1111/j.1758-2229.2010.00220.x. Epub 2010 Oct 26.

PMID:
23761259
44.

Phylogenetic relationships of Shiga toxin-producing Escherichia coli isolated from Peruvian children.

Contreras CA, Ochoa TJ, Ruiz J, Lacher DW, Rivera FP, Saenz Y, Chea-Woo E, Zavaleta N, Gil AI, Lanata CF, Huicho L, Maves RC, Torres C, Debroy C, Cleary TG.

J Med Microbiol. 2011 May;60(Pt 5):639-46. doi: 10.1099/jmm.0.026666-0. Epub 2011 Feb 3.

45.

Multiplex polymerase chain reaction assay for detection of nonserotypable Shiga toxin-producing Escherichia coli strains of serogroup O147.

DebRoy C, Roberts E, Davis M, Bumbaugh A.

Foodborne Pathog Dis. 2010 Nov;7(11):1407-14. doi: 10.1089/fpd.2010.0614. Epub 2010 Jul 9.

PMID:
20617939
46.

Escherichia coli serogroup O2 and O28ac O-antigen gene cluster sequences and detection of pathogenic E. coli O2 and O28ac by PCR.

Fratamico PM, Yan X, Liu Y, DebRoy C, Byrne B, Monaghan A, Fanning S, Bolton D.

Can J Microbiol. 2010 Apr;56(4):308-16. doi: 10.1139/w10-010.

PMID:
20453897
47.

Necrotizing pneumonia and pleuritis associated with extraintestinal pathogenic Escherichia coli in a tiger (Panthera tigris) cub.

Carvallo FR, Debroy C, Baeza E, Hinckley L, Gilbert K, Choi SJ, Risatti G, Smyth JA.

J Vet Diagn Invest. 2010 Jan;22(1):136-40.

PMID:
20093704
48.

Pyrosequencing of the Vir plasmid of necrotoxigenic Escherichia coli.

Johnson TJ, DebRoy C, Belton S, Williams ML, Lawrence M, Nolan LK, Thorsness JL.

Vet Microbiol. 2010 Jul 29;144(1-2):100-9. doi: 10.1016/j.vetmic.2009.12.022. Epub 2009 Dec 23.

PMID:
20060660
49.

Escherichia coli sequence type ST131 as an emerging fluoroquinolone-resistant uropathogen among renal transplant recipients.

Johnson JR, Johnston B, Clabots C, Kuskowski MA, Pendyala S, Debroy C, Nowicki B, Rice J.

Antimicrob Agents Chemother. 2010 Jan;54(1):546-50. doi: 10.1128/AAC.01089-09. Epub 2009 Nov 16.

50.

Complete sequence of pEC14_114, a highly conserved IncFIB/FIIA plasmid associated with uropathogenic Escherichia coli cystitis strains.

DebRoy C, Sidhu MS, Sarker U, Jayarao BM, Stell AL, Bell NP, Johnson TJ.

Plasmid. 2010 Jan;63(1):53-60. doi: 10.1016/j.plasmid.2009.10.003. Epub 2009 Nov 1.

PMID:
19887083

Supplemental Content

Loading ...
Support Center