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Items: 38

1.

The Chromatin Remodelers PKL and PIE1 Act in an Epigenetic Pathway That Determines H3K27me3 Homeostasis in Arabidopsis.

Carter B, Bishop B, Ho KK, Huang R, Jia W, Zhang H, Pascuzzi PE, Deal RB, Ogas J.

Plant Cell. 2018 Jun;30(6):1337-1352. doi: 10.1105/tpc.17.00867. Epub 2018 May 25.

PMID:
29802212
2.

Changes in chromatin accessibility between Arabidopsis stem cells and mesophyll cells illuminate cell type-specific transcription factor networks.

Sijacic P, Bajic M, McKinney EC, Meagher RB, Deal RB.

Plant J. 2018 Apr;94(2):215-231. doi: 10.1111/tpj.13882.

PMID:
29513366
3.

Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules.

Maher KA, Bajic M, Kajala K, Reynoso M, Pauluzzi G, West DA, Zumstein K, Woodhouse M, Bubb K, Dorrity MW, Queitsch C, Bailey-Serres J, Sinha N, Brady SM, Deal RB.

Plant Cell. 2018 Jan;30(1):15-36. doi: 10.1105/tpc.17.00581. Epub 2017 Dec 11.

PMID:
29229750
4.

Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq.

Bajic M, Maher KA, Deal RB.

Methods Mol Biol. 2018;1675:183-201. doi: 10.1007/978-1-4939-7318-7_12.

5.

A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate.

Foley SW, Gosai SJ, Wang D, Selamoglu N, Sollitti AC, Köster T, Steffen A, Lyons E, Daldal F, Garcia BA, Staiger D, Deal RB, Gregory BD.

Dev Cell. 2017 Apr 24;41(2):204-220.e5. doi: 10.1016/j.devcel.2017.03.018.

6.

On the origin and evolutionary consequences of gene body DNA methylation.

Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, Jacobsen SE, Schneeberger K, Zhang X, Schmitz RJ.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9111-6. doi: 10.1073/pnas.1604666113. Epub 2016 Jul 25.

7.

Epigenome profiling of specific plant cell types using a streamlined INTACT protocol and ChIP-seq.

Wang D, Deal RB.

Methods Mol Biol. 2015;1284:3-25. doi: 10.1007/978-1-4939-2444-8_1.

PMID:
25757765
8.

Global analysis of the RNA-protein interaction and RNA secondary structure landscapes of the Arabidopsis nucleus.

Gosai SJ, Foley SW, Wang D, Silverman IM, Selamoglu N, Nelson AD, Beilstein MA, Daldal F, Deal RB, Gregory BD.

Mol Cell. 2015 Jan 22;57(2):376-88. doi: 10.1016/j.molcel.2014.12.004. Epub 2014 Dec 31.

9.

Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model.

Ron M, Kajala K, Pauluzzi G, Wang D, Reynoso MA, Zumstein K, Garcha J, Winte S, Masson H, Inagaki S, Federici F, Sinha N, Deal RB, Bailey-Serres J, Brady SM.

Plant Physiol. 2014 Oct;166(2):455-69. doi: 10.1104/pp.114.239392. Epub 2014 May 27.

10.

Technologies for systems-level analysis of specific cell types in plants.

Wang D, Mills ES, Deal RB.

Plant Sci. 2012 Dec;197:21-29. doi: 10.1016/j.plantsci.2012.08.012. Epub 2012 Aug 30. Review.

11.

Measuring genome-wide nucleosome turnover using CATCH-IT.

Teves SS, Deal RB, Henikoff S.

Methods Enzymol. 2012;513:169-84. doi: 10.1016/B978-0-12-391938-0.00007-0.

PMID:
22929769
12.

Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling.

Steiner FA, Talbert PB, Kasinathan S, Deal RB, Henikoff S.

Genome Res. 2012 Apr;22(4):766-77. doi: 10.1101/gr.131748.111. Epub 2012 Jan 4.

13.

The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana.

Deal RB, Henikoff S.

Nat Protoc. 2011 Jan;6(1):56-68. doi: 10.1038/nprot.2010.175. Epub 2010 Dec 16.

PMID:
21212783
14.

Grand Challenge: Accelerating Discovery through Technology Development.

Deal RB.

Front Plant Sci. 2011 Aug 19;2:41. doi: 10.3389/fpls.2011.00041. eCollection 2011. No abstract available.

15.

Histone variants and modifications in plant gene regulation.

Deal RB, Henikoff S.

Curr Opin Plant Biol. 2011 Apr;14(2):116-22. doi: 10.1016/j.pbi.2010.11.005. Epub 2010 Dec 13. Review.

16.

Capturing the dynamic epigenome.

Deal RB, Henikoff S.

Genome Biol. 2010;11(10):218. doi: 10.1186/gb-2010-11-10-218. Epub 2010 Oct 8. Review.

17.

Catching a glimpse of nucleosome dynamics.

Deal RB, Henikoff S.

Cell Cycle. 2010 Sep 1;9(17):3389-90. doi: 10.4161/cc.9.17.13091. Epub 2010 Sep 20. No abstract available.

PMID:
20703085
18.

A simple method for gene expression and chromatin profiling of individual cell types within a tissue.

Deal RB, Henikoff S.

Dev Cell. 2010 Jun 15;18(6):1030-40. doi: 10.1016/j.devcel.2010.05.013. Erratum in: Dev Cell. 2011 Dec 13;21(6):1179.

19.

Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones.

Deal RB, Henikoff JG, Henikoff S.

Science. 2010 May 28;328(5982):1161-4. doi: 10.1126/science.1186777.

20.

Gene regulation: A chromatin thermostat.

Deal RB, Henikoff S.

Nature. 2010 Feb 18;463(7283):887-8. doi: 10.1038/463887a. No abstract available.

21.

Histone H2A.Z regulates the expression of several classes of phosphate starvation response genes but not as a transcriptional activator.

Smith AP, Jain A, Deal RB, Nagarajan VK, Poling MD, Raghothama KG, Meagher RB.

Plant Physiol. 2010 Jan;152(1):217-25. doi: 10.1104/pp.109.145532. Epub 2009 Nov 6.

22.

Arabidopsis actin-related protein ARP5 in multicellular development and DNA repair.

Kandasamy MK, McKinney EC, Deal RB, Smith AP, Meagher RB.

Dev Biol. 2009 Nov 1;335(1):22-32. doi: 10.1016/j.ydbio.2009.08.006. Epub 2009 Aug 11.

23.

Engineered cell surface expression of membrane immunoglobulin as a means to identify monoclonal antibody-secreting hybridomas.

Price PW, McKinney EC, Wang Y, Sasser LE, Kandasamy MK, Matsuuchi L, Milcarek C, Deal RB, Culver DG, Meagher RB.

J Immunol Methods. 2009 Mar 31;343(1):28-41. doi: 10.1016/j.jim.2009.01.005. Epub 2009 Jan 31.

24.

ACTIN DEPOLYMERIZING FACTOR9 controls development and gene expression in Arabidopsis.

Burgos-Rivera B, Ruzicka DR, Deal RB, McKinney EC, King-Reid L, Meagher RB.

Plant Mol Biol. 2008 Dec;68(6):619-32. doi: 10.1007/s11103-008-9398-1. Epub 2008 Oct 2.

25.

Actin-related proteins in chromatin-level control of the cell cycle and developmental transitions.

Meagher RB, Kandasamy MK, Deal RB, McKinney EC.

Trends Cell Biol. 2007 Jul;17(7):325-32. Epub 2007 Jul 20. Review.

PMID:
17643304
26.

Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.Z.

Deal RB, Topp CN, McKinney EC, Meagher RB.

Plant Cell. 2007 Jan;19(1):74-83. Epub 2007 Jan 12.

27.

Nuclear actin-related proteins as epigenetic regulators of development.

Meagher RB, Deal RB, Kandasamy MK, McKinney EC.

Plant Physiol. 2005 Dec;139(4):1576-85. Review. No abstract available.

29.

Inverted repeat PCR for the rapid assembly of constructs to induce RNA interference.

Pawloski LC, Deal RB, McKinney EC, Burgos-Rivera B, Meagher RB.

Plant Cell Physiol. 2005 Nov;46(11):1872-8. Epub 2005 Aug 24.

PMID:
16120684
30.

Arabidopsis ARP7 is an essential actin-related protein required for normal embryogenesis, plant architecture, and floral organ abscission.

Kandasamy MK, McKinney EC, Deal RB, Meagher RB.

Plant Physiol. 2005 Aug;138(4):2019-32. Epub 2005 Jul 22.

32.

Plant actin-related proteins.

Kandasamy MK, Deal RB, McKinney EC, Meagher RB.

Trends Plant Sci. 2004 Apr;9(4):196-202. Review.

PMID:
15063870
33.

The analysis of ventricular late potentials using orthogonal recordings.

Lander P, Deal RB, Berbari EJ.

IEEE Trans Biomed Eng. 1988 Aug;35(8):629-39. No abstract available.

PMID:
3169814
34.

Dose-incidence relationships for exencephalia, anophthalmia and prenatal mortality in mouse embryos irradiated with fission neutrons or 250 kV X-rays.

Friedberg W, Faulkner DN, Neas BR, Hanneman GD, Darden EB Jr, Deal RB Jr, Parker DE.

Int J Radiat Biol Relat Stud Phys Chem Med. 1987 Aug;52(2):223-36.

PMID:
3497121
35.

The analysis of matched studies.

Owen WL, Parker DE, Deal RB.

J Okla State Med Assoc. 1986 Mar;79(3):155-8. No abstract available.

PMID:
3701482
36.

Estimators of relative disease risk--a life table simulation.

Zeighami E, Sohler KB, Deal RB.

J Chronic Dis. 1979;32(8):589-98. No abstract available.

PMID:
468961
37.

A method for the immunoassay of insulin in the presence of insulin therapy-induced antibody.

Davidson P, Deal RB.

J Lab Clin Med. 1976 Jun;87(6):1050-6.

PMID:
778312
38.

Prenatal survival of mice irradiated with fission neutrons or 300kVp x-rays during the pronuclear-zygote stage: survival curves, effect of dose fractionation.

Friedberg W, Hanneman GD, Faulkner DN, Darden EB Jr, Deal RB Jr.

Int J Radiat Biol Relat Stud Phys Chem Med. 1973 Dec;24(6):549-60. No abstract available.

PMID:
4543562

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