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Items: 1 to 50 of 178

1.

Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean.

Wilson ST, Hawco NJ, Armbrust EV, Barone B, Björkman KM, Boysen AK, Burgos M, Burrell TJ, Casey JR, DeLong EF, Dugenne M, Dutkiewicz S, Dyhrman ST, Ferrón S, Follows MJ, Foreman RK, Funkey CP, Harke MJ, Henke BA, Hill CN, Hynes AM, Ingalls AE, Jahn O, Kelly RL, Knapp AN, Letelier RM, Ribalet F, Shimabukuro EM, Tabata RKS, Turk-Kubo KA, White AE, Zehr JP, John S, Karl DM.

Science. 2019 Sep 6;365(6457):1040-1044. doi: 10.1126/science.aax4767.

PMID:
31488692
2.

Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection.

Kolody BC, McCrow JP, Allen LZ, Aylward FO, Fontanez KM, Moustafa A, Moniruzzaman M, Chavez FP, Scholin CA, Allen EE, Worden AZ, Delong EF, Allen AE.

ISME J. 2019 Jul 18. doi: 10.1038/s41396-019-0472-2. [Epub ahead of print]

PMID:
31320727
3.

Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean.

Boeuf D, Edwards BR, Eppley JM, Hu SK, Poff KE, Romano AE, Caron DA, Karl DM, DeLong EF.

Proc Natl Acad Sci U S A. 2019 Jun 11;116(24):11824-11832. doi: 10.1073/pnas.1903080116. Epub 2019 May 24.

4.

Phosphate-limited ocean regions select for bacterial populations enriched in the carbon-phosphorus lyase pathway for phosphonate degradation.

Sosa OA, Repeta DJ, DeLong EF, Ashkezari MD, Karl DM.

Environ Microbiol. 2019 Jul;21(7):2402-2414. doi: 10.1111/1462-2920.14628. Epub 2019 May 27.

PMID:
30972938
5.

Thank You Ken, Joan and Dave, for 20 years of Environmental Microbiology!

DeLong EF.

Environ Microbiol. 2018 Jun;20(6):1964-1965. doi: 10.1111/1462-2920.14243. Epub 2018 Jul 22. No abstract available.

PMID:
29749685
6.

Towards a microbial universal theory of all (nearly) totality: MUTANT.

DeLong EF.

Environ Microbiol. 2018 Jun;20(6):1962-1963. doi: 10.1111/1462-2920.14242. Epub 2018 Jul 22. No abstract available.

PMID:
29749683
7.

Proteorhodopsin variability and distribution in the North Pacific Subtropical Gyre.

Olson DK, Yoshizawa S, Boeuf D, Iwasaki W, DeLong EF.

ISME J. 2018 Apr;12(4):1047-1060. doi: 10.1038/s41396-018-0074-4. Epub 2018 Feb 23.

8.

Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia.

Kumagai Y, Yoshizawa S, Nakajima Y, Watanabe M, Fukunaga T, Ogura Y, Hayashi T, Oshima K, Hattori M, Ikeuchi M, Kogure K, DeLong EF, Iwasaki W.

ISME J. 2018 May;12(5):1329-1343. doi: 10.1038/s41396-018-0058-4. Epub 2018 Feb 6.

9.

Bacterial Succession on Sinking Particles in the Ocean's Interior.

Pelve EA, Fontanez KM, DeLong EF.

Front Microbiol. 2017 Nov 24;8:2269. doi: 10.3389/fmicb.2017.02269. eCollection 2017.

10.

Bacteriophage Distributions and Temporal Variability in the Ocean's Interior.

Luo E, Aylward FO, Mende DR, DeLong EF.

MBio. 2017 Nov 28;8(6). pii: e01903-17. doi: 10.1128/mBio.01903-17.

11.

Isolation and Characterization of Bacteria That Degrade Phosphonates in Marine Dissolved Organic Matter.

Sosa OA, Repeta DJ, Ferrón S, Bryant JA, Mende DR, Karl DM, DeLong EF.

Front Microbiol. 2017 Sep 26;8:1786. doi: 10.3389/fmicb.2017.01786. eCollection 2017.

12.

Diel cycling and long-term persistence of viruses in the ocean's euphotic zone.

Aylward FO, Boeuf D, Mende DR, Wood-Charlson EM, Vislova A, Eppley JM, Romano AE, DeLong EF.

Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):11446-11451. doi: 10.1073/pnas.1714821114. Epub 2017 Oct 11.

13.

Environmental drivers of a microbial genomic transition zone in the ocean's interior.

Mende DR, Bryant JA, Aylward FO, Eppley JM, Nielsen T, Karl DM, DeLong EF.

Nat Microbiol. 2017 Oct;2(10):1367-1373. doi: 10.1038/s41564-017-0008-3. Epub 2017 Aug 14.

PMID:
28808230
14.

Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera.

Wilson ST, Aylward FO, Ribalet F, Barone B, Casey JR, Connell PE, Eppley JM, Ferrón S, Fitzsimmons JN, Hayes CT, Romano AE, Turk-Kubo KA, Vislova A, Armbrust EV, Caron DA, Church MJ, Zehr JP, Karl DM, DeLong EF.

Nat Microbiol. 2017 Jul 31;2:17118. doi: 10.1038/nmicrobiol.2017.118.

PMID:
28758990
15.

Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean.

Boiteau RM, Mende DR, Hawco NJ, McIlvin MR, Fitzsimmons JN, Saito MA, Sedwick PN, DeLong EF, Repeta DJ.

Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):14237-14242. Epub 2016 Dec 1.

16.
17.

Diversity and Activity of Communities Inhabiting Plastic Debris in the North Pacific Gyre.

Bryant JA, Clemente TM, Viviani DA, Fong AA, Thomas KA, Kemp P, Karl DM, White AE, DeLong EF.

mSystems. 2016 May 17;1(3). pii: e00024-16. eCollection 2016 May-Jun.

18.

Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Pinhassi J, DeLong EF, Béjà O, González JM, Pedrós-Alió C.

Microbiol Mol Biol Rev. 2016 Sep 14;80(4):929-54. doi: 10.1128/MMBR.00003-16. Print 2016 Dec. Review.

19.

Structural Mechanism for Light-driven Transport by a New Type of Chloride Ion Pump, Nonlabens marinus Rhodopsin-3.

Hosaka T, Yoshizawa S, Nakajima Y, Ohsawa N, Hato M, DeLong EF, Kogure K, Yokoyama S, Kimura-Someya T, Iwasaki W, Shirouzu M.

J Biol Chem. 2016 Aug 19;291(34):17488-17495. doi: 10.1074/jbc.M116.728220. Epub 2016 Jun 30.

20.

Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies.

Mende DR, Aylward FO, Eppley JM, Nielsen TN, DeLong EF.

Front Microbiol. 2016 Feb 11;7:143. doi: 10.3389/fmicb.2016.00143. eCollection 2016.

21.

Genetic Diversity Affects the Daily Transcriptional Oscillations of Marine Microbial Populations.

Shilova IN, Robidart JC, DeLong EF, Zehr JP.

PLoS One. 2016 Jan 11;11(1):e0146706. doi: 10.1371/journal.pone.0146706. eCollection 2016.

22.

Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre.

Bryant JA, Aylward FO, Eppley JM, Karl DM, Church MJ, DeLong EF.

ISME J. 2016 Jun;10(6):1308-22. doi: 10.1038/ismej.2015.221. Epub 2015 Dec 8.

23.

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre.

Fontanez KM, Eppley JM, Samo TJ, Karl DM, DeLong EF.

Front Microbiol. 2015 May 19;6:469. doi: 10.3389/fmicb.2015.00469. eCollection 2015.

24.

High molecular weight dissolved organic matter enrichment selects for methylotrophs in dilution to extinction cultures.

Sosa OA, Gifford SM, Repeta DJ, DeLong EF.

ISME J. 2015 Dec;9(12):2725-39. doi: 10.1038/ismej.2015.68. Epub 2015 May 15.

25.

Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone.

Astorga-Eló M, Ramírez-Flandes S, DeLong EF, Ulloa O.

ISME J. 2015 May;9(5):1268. doi: 10.1038/ismej.2015.52. No abstract available.

26.

Microbial community transcriptional networks are conserved in three domains at ocean basin scales.

Aylward FO, Eppley JM, Smith JM, Chavez FP, Scholin CA, DeLong EF.

Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):5443-8. doi: 10.1073/pnas.1502883112. Epub 2015 Mar 9.

27.

Using total internal reflection fluorescence microscopy to visualize rhodopsin-containing cells.

Keffer JL, Sabanayagam CR, Lee ME, DeLong EF, Hahn MW, Maresca JA.

Appl Environ Microbiol. 2015 May 15;81(10):3442-50. doi: 10.1128/AEM.00230-15. Epub 2015 Mar 13.

28.

Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone.

Astorga-Eló M, Ramírez-Flandes S, DeLong EF, Ulloa O.

ISME J. 2015 May;9(5):1264-7. doi: 10.1038/ismej.2015.21. Epub 2015 Feb 20. Erratum in: ISME J. 2015 May;9(5):1268.

29.

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile.

Parris DJ, Ganesh S, Edgcomb VP, DeLong EF, Stewart FJ.

Front Microbiol. 2014 Oct 28;5:543. doi: 10.3389/fmicb.2014.00543. eCollection 2014.

30.

Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile.

Dalsgaard T, Stewart FJ, Thamdrup B, De Brabandere L, Revsbech NP, Ulloa O, Canfield DE, DeLong EF.

MBio. 2014 Oct 28;5(6):e01966. doi: 10.1128/mBio.01966-14.

31.

Alien invasions and gut "island biogeography".

DeLong EF.

Cell. 2014 Oct 9;159(2):233-5. doi: 10.1016/j.cell.2014.09.043.

32.

Reply to Schouten et al.: Marine Group II planktonic Euryarchaeota are significant contributors to tetraether lipids in the ocean.

Lincoln SA, Wai B, Eppley JM, Church MJ, Summons RE, DeLong EF.

Proc Natl Acad Sci U S A. 2014 Oct 14;111(41):E4286. doi: 10.1073/pnas.1416736111. Epub 2014 Sep 19. No abstract available.

33.

Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013).

Gilbert JA, Dick GJ, Jenkins B, Heidelberg J, Allen E, Mackey KR, DeLong EF.

Stand Genomic Sci. 2014 Mar 15;9(3):1252-8. doi: 10.4056/sigs.5749944. eCollection 2014 Jun 15.

34.

Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome.

Durham BP, Grote J, Whittaker KA, Bender SJ, Luo H, Grim SL, Brown JM, Casey JR, Dron A, Florez-Leiva L, Krupke A, Luria CM, Mine AH, Nigro OD, Pather S, Talarmin A, Wear EK, Weber TS, Wilson JM, Church MJ, DeLong EF, Karl DM, Steward GF, Eppley JM, Kyrpides NC, Schuster S, Rappé MS.

Stand Genomic Sci. 2014 Mar 15;9(3):632-45. doi: 10.4056/sigs.4998989. eCollection 2014 Jun 15.

35.

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.

Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, Detter JC, De Vos P, Donohue TJ, Dong XZ, Ehrlich DS, Fraser C, Gibbs R, Gilbert J, Gilna P, Glöckner FO, Jansson JK, Keasling JD, Knight R, Labeda D, Lapidus A, Lee JS, Li WJ, Ma J, Markowitz V, Moore ER, Morrison M, Meyer F, Nelson KE, Ohkuma M, Ouzounis CA, Pace N, Parkhill J, Qin N, Rossello-Mora R, Sikorski J, Smith D, Sogin M, Stevens R, Stingl U, Suzuki K, Taylor D, Tiedje JM, Tindall B, Wagner M, Weinstock G, Weissenbach J, White O, Wang J, Zhang L, Zhou YG, Field D, Whitman WB, Garrity GM, Klenk HP.

PLoS Biol. 2014 Aug 5;12(8):e1001920. doi: 10.1371/journal.pbio.1001920. eCollection 2014 Aug.

36.

Ocean microbes. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages.

Ottesen EA, Young CR, Gifford SM, Eppley JM, Marin R 3rd, Schuster SC, Scholin CA, DeLong EF.

Science. 2014 Jul 11;345(6193):207-12. doi: 10.1126/science.1252476.

37.

Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean.

Lincoln SA, Wai B, Eppley JM, Church MJ, Summons RE, DeLong EF.

Proc Natl Acad Sci U S A. 2014 Jul 8;111(27):9858-63. doi: 10.1073/pnas.1409439111. Epub 2014 Jun 19.

38.

Deep-water anoxygenic photosythesis in a ferruginous chemocline.

Crowe SA, Maresca JA, Jones C, Sturm A, Henny C, Fowle DA, Cox RP, Delong EF, Canfield DE.

Geobiology. 2014 Jul;12(4):322-39. doi: 10.1111/gbi.12089.

PMID:
24923179
39.

Closely related phytoplankton species produce similar suites of dissolved organic matter.

Becker JW, Berube PM, Follett CL, Waterbury JB, Chisholm SW, Delong EF, Repeta DJ.

Front Microbiol. 2014 Mar 28;5:111. doi: 10.3389/fmicb.2014.00111. eCollection 2014.

40.

Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria.

Yoshizawa S, Kumagai Y, Kim H, Ogura Y, Hayashi T, Iwasaki W, DeLong EF, Kogure K.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6732-7. doi: 10.1073/pnas.1403051111. Epub 2014 Mar 31.

41.

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype.

Thrash JC, Temperton B, Swan BK, Landry ZC, Woyke T, DeLong EF, Stepanauskas R, Giovannoni SJ.

ISME J. 2014 Jul;8(7):1440-51. doi: 10.1038/ismej.2013.243. Epub 2014 Jan 23.

42.

Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria.

Martínez A, Ventouras LA, Wilson ST, Karl DM, Delong EF.

Front Microbiol. 2013 Nov 26;4:340. doi: 10.3389/fmicb.2013.00340. eCollection 2013.

43.

Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade.

Sharma AK, Becker JW, Ottesen EA, Bryant JA, Duhamel S, Karl DM, Cordero OX, Repeta DJ, DeLong EF.

Environ Microbiol. 2014 Sep;16(9):2815-30. doi: 10.1111/1462-2920.12254. Epub 2013 Sep 30.

PMID:
24118765
44.

Preface. Microbial metagenomics, metatranscriptomics, and metaproteomics.

DeLong EF.

Methods Enzymol. 2013;531:xxi. doi: 10.1016/B978-0-12-407863-5.09983-4. No abstract available.

PMID:
24060136
45.

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone.

Ganesh S, Parris DJ, DeLong EF, Stewart FJ.

ISME J. 2014 Jan;8(1):187-211. doi: 10.1038/ismej.2013.144. Epub 2013 Sep 12.

46.

Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts.

Sanders JG, Beinart RA, Stewart FJ, Delong EF, Girguis PR.

ISME J. 2013 Aug;7(8):1556-67. doi: 10.1038/ismej.2013.45. Epub 2013 Apr 25.

47.

Pattern and synchrony of gene expression among sympatric marine microbial populations.

Ottesen EA, Young CR, Eppley JM, Ryan JP, Chavez FP, Scholin CA, DeLong EF.

Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):E488-97. doi: 10.1073/pnas.1222099110. Epub 2013 Jan 23.

48.

Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations.

Cordero OX, Ventouras LA, DeLong EF, Polz MF.

Proc Natl Acad Sci U S A. 2012 Dec 4;109(49):20059-64. doi: 10.1073/pnas.1213344109. Epub 2012 Nov 19.

49.

Oxygen minimum zones harbour novel viral communities with low diversity.

Cassman N, Prieto-Davó A, Walsh K, Silva GG, Angly F, Akhter S, Barott K, Busch J, McDole T, Haggerty JM, Willner D, Alarcón G, Ulloa O, DeLong EF, Dutilh BE, Rohwer F, Dinsdale EA.

Environ Microbiol. 2012 Nov;14(11):3043-65. doi: 10.1111/j.1462-2920.2012.02891.x. Epub 2012 Oct 5.

PMID:
23039259
50.

Microbial oceanography of anoxic oxygen minimum zones.

Ulloa O, Canfield DE, DeLong EF, Letelier RM, Stewart FJ.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):15996-6003. doi: 10.1073/pnas.1205009109. Epub 2012 Sep 11. Review.

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