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Items: 1 to 50 of 178

1.

Preparing Protein Antigens from Sodium Dodecyl Sulfate-Polyacrylamide Gels for Immunization.

Greenfield EA, DeCaprio J, Brahmandam M.

Cold Spring Harb Protoc. 2019 Dec 2;2019(12):pdb.prot100008. doi: 10.1101/pdb.prot100008.

PMID:
31792141
2.

Detecting Protein Antigens in Sodium Dodecyl Sulfate-Polyacrylamide Gels.

Greenfield EA, DeCaprio J, Brahmandam M.

Cold Spring Harb Protoc. 2019 Dec 2;2019(12):pdb.prot099994. doi: 10.1101/pdb.prot099994.

PMID:
31792140
3.

RB, p130 and p107 differentially repress G1/S and G2/M genes after p53 activation.

Schade AE, Fischer M, DeCaprio JA.

Nucleic Acids Res. 2019 Dec 2;47(21):11197-11208. doi: 10.1093/nar/gkz961.

4.

The Genomic Landscape of Merkel Cell Carcinoma and Clinicogenomic Biomarkers of Response to Immune Checkpoint Inhibitor Therapy.

Knepper TC, Montesion M, Russell JS, Sokol ES, Frampton GM, Miller VA, Albacker LA, McLeod HL, Eroglu Z, Khushalani NI, Sondak VK, Messina JL, Schell MJ, DeCaprio JA, Tsai KY, Brohl AS.

Clin Cancer Res. 2019 Oct 1;25(19):5961-5971. doi: 10.1158/1078-0432.CCR-18-4159. Epub 2019 Aug 9.

PMID:
31399473
5.

Using Dounce Homogenization to Lyse Cells for Immunoprecipitation.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2019 Jul 1;2019(7):pdb.prot098574. doi: 10.1101/pdb.prot098574.

PMID:
31262961
6.

Cyclin D-CDK4 relieves cooperative repression of proliferation and cell cycle gene expression by DREAM and RB.

Schade AE, Oser MG, Nicholson HE, DeCaprio JA.

Oncogene. 2019 Jun;38(25):4962-4976. doi: 10.1038/s41388-019-0767-9. Epub 2019 Mar 4.

7.

Transfected Dendritic Cell Immunizations.

Greenfield EA, DeCaprio J, Brahmandam M.

Cold Spring Harb Protoc. 2019 Mar 1;2019(3):pdb.prot100073. doi: 10.1101/pdb.prot100073.

PMID:
30824623
8.

DYRK1A regulates the recruitment of 53BP1 to the sites of DNA damage in part through interaction with RNF169.

Menon VR, Ananthapadmanabhan V, Swanson S, Saini S, Sesay F, Yakovlev V, Florens L, DeCaprio JA, Washburn MP, Dozmorov M, Litovchick L.

Cell Cycle. 2019 Mar;18(5):531-551. doi: 10.1080/15384101.2019.1577525. Epub 2019 Feb 17.

9.

A Murine Model of Chronic Lymphocytic Leukemia Based on B Cell-Restricted Expression of Sf3b1 Mutation and Atm Deletion.

Yin S, Gambe RG, Sun J, Martinez AZ, Cartun ZJ, Regis FFD, Wan Y, Fan J, Brooks AN, Herman SEM, Ten Hacken E, Taylor-Weiner A, Rassenti LZ, Ghia EM, Kipps TJ, Obeng EA, Cibulskis CL, Neuberg D, Campagna DR, Fleming MD, Ebert BL, Wiestner A, Leshchiner I, DeCaprio JA, Getz G, Reed R, Carrasco RD, Wu CJ, Wang L.

Cancer Cell. 2019 Feb 11;35(2):283-296.e5. doi: 10.1016/j.ccell.2018.12.013. Epub 2019 Jan 31.

10.

Tandem Immunoaffinity Purification Using Anti-FLAG and Anti-HA Antibodies.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2019 Feb 1;2019(2). doi: 10.1101/pdb.prot098657.

PMID:
30710027
11.

Cross-Linking Antibodies to Beads with Disuccinimidyl Suberate (DSS).

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2019 Feb 1;2019(2). doi: 10.1101/pdb.prot098632.

PMID:
30710026
12.

Cross-Linking Antibodies to Beads Using Dimethyl Pimelimidate (DMP).

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2019 Feb 1;2019(2). doi: 10.1101/pdb.prot098624.

PMID:
30710025
13.

Dual inhibition of MDM2 and MDM4 in virus-positive Merkel cell carcinoma enhances the p53 response.

Park DE, Cheng J, Berrios C, Montero J, Cortés-Cros M, Ferretti S, Arora R, Tillgren ML, Gokhale PC, DeCaprio JA.

Proc Natl Acad Sci U S A. 2019 Jan 15;116(3):1027-1032. doi: 10.1073/pnas.1818798116. Epub 2018 Dec 31.

14.

SPOP Promotes Nanog Destruction to Suppress Stem Cell Traits and Prostate Cancer Progression.

Zhang J, Chen M, Zhu Y, Dai X, Dang F, Ren J, Ren S, Shulga YV, Beca F, Gan W, Wu F, Lin YM, Zhou X, DeCaprio JA, Beck AH, Lu KP, Huang J, Zhao C, Sun Y, Gao X, Pandolfi PP, Wei W.

Dev Cell. 2019 Feb 11;48(3):329-344.e5. doi: 10.1016/j.devcel.2018.11.035. Epub 2018 Dec 27.

15.

Merkel Cell Carcinoma in the HIV-1/AIDS Patient.

Goldstein RH, DeCaprio JA.

Cancer Treat Res. 2019;177:211-229. doi: 10.1007/978-3-030-03502-0_8.

PMID:
30523626
16.

Preparing Antigens Using a Baculovirus Expression System.

Greenfield EA, DeCaprio J, Brahmandam M.

Cold Spring Harb Protoc. 2018 Dec 3;2018(12). doi: 10.1101/pdb.prot100065.

PMID:
30510129
17.

Contribution of DNA Replication to the FAM111A-Mediated Simian Virus 40 Host Range Phenotype.

Tarnita RM, Wilkie AR, DeCaprio JA.

J Virol. 2018 Dec 10;93(1). pii: e01330-18. doi: 10.1128/JVI.01330-18. Print 2019 Jan 1.

18.

The biology and treatment of Merkel cell carcinoma: current understanding and research priorities.

Harms PW, Harms KL, Moore PS, DeCaprio JA, Nghiem P, Wong MKK, Brownell I; International Workshop on Merkel Cell Carcinoma Research (IWMCC) Working Group.

Nat Rev Clin Oncol. 2018 Dec;15(12):763-776. doi: 10.1038/s41571-018-0103-2. Review.

19.

Making Weak Antigens Strong: Cross-Linking Peptides to KLH with Maleimide.

Greenfield EA, DeCaprio J, Brahmandam M.

Cold Spring Harb Protoc. 2018 Oct 1;2018(10). doi: 10.1101/pdb.prot100016.

PMID:
30275080
20.

Metabolic Labeling of Protein Antigens with [32P]Orthophosphate.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2018 Sep 4;2018(9). doi: 10.1101/pdb.prot098533.

PMID:
30181225
21.

Pulse-Chase Labeling of Protein Antigens with [35S]Methionine.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2018 Sep 4;2018(9). doi: 10.1101/pdb.prot098525.

PMID:
30181224
22.

Making Weak Antigens Strong: Modifying Protein Antigens by Denaturation.

Greenfield EA, DeCaprio J, Brahmandam M.

Cold Spring Harb Protoc. 2018 May 1;2018(5). doi: 10.1101/pdb.prot099960.

PMID:
29717055
23.

Making Weak Antigens Strong: Modifying Antigens by Dinitrophenol or Arsynyl Coupling.

Greenfield EA, DeCaprio J, Brahmandam M.

Cold Spring Harb Protoc. 2018 May 1;2018(5). doi: 10.1101/pdb.prot099952.

PMID:
29717054
24.

Cabozantinib in Patients with Advanced Merkel Cell Carcinoma.

Rabinowits G, Lezcano C, Catalano PJ, McHugh P, Becker H, Reilly MM, Huang J, Tyagi A, Thakuria M, Bresler SC, Sholl LM, Shapiro GI, Haddad R, DeCaprio JA.

Oncologist. 2018 Jul;23(7):814-821. doi: 10.1634/theoncologist.2017-0552. Epub 2018 Feb 14.

25.

Immunoprecipitation.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2017 Dec 1;2017(12):pdb.prot098640. doi: 10.1101/pdb.prot098640.

PMID:
29196601
26.

Detergent Lysis of Animal Tissues for Immunoprecipitation.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2017 Dec 1;2017(12):pdb.prot098566. doi: 10.1101/pdb.prot098566.

PMID:
29196600
27.

Detergent Lysis of Tissue Culture Cells for Immunoprecipitation.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2017 Dec 1;2017(12):pdb.prot098558. doi: 10.1101/pdb.prot098558.

PMID:
29196599
28.

Epidemiology, biology and therapy of Merkel cell carcinoma: conclusions from the EU project IMMOMEC.

Becker JC, Stang A, Hausen AZ, Fischer N, DeCaprio JA, Tothill RW, Lyngaa R, Hansen UK, Ritter C, Nghiem P, Bichakjian CK, Ugurel S, Schrama D.

Cancer Immunol Immunother. 2018 Mar;67(3):341-351. doi: 10.1007/s00262-017-2099-3. Epub 2017 Nov 30. Review.

29.

Merkel cell carcinoma.

Becker JC, Stang A, DeCaprio JA, Cerroni L, Lebbé C, Veness M, Nghiem P.

Nat Rev Dis Primers. 2017 Oct 26;3:17077. doi: 10.1038/nrdp.2017.77. Review.

30.

Merkel cell polyomavirus recruits MYCL to the EP400 complex to promote oncogenesis.

Cheng J, Park DE, Berrios C, White EA, Arora R, Yoon R, Branigan T, Xiao T, Westerling T, Federation A, Zeid R, Strober B, Swanson SK, Florens L, Bradner JE, Brown M, Howley PM, Padi M, Washburn MP, DeCaprio JA.

PLoS Pathog. 2017 Oct 13;13(10):e1006668. doi: 10.1371/journal.ppat.1006668. eCollection 2017 Oct.

31.

Metabolic Labeling of Protein Antigens with [35S]Methionine.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2017 Oct 3;2017(10):pdb.prot098517. doi: 10.1101/pdb.prot098517.

PMID:
28974658
32.

Merkel cell polyomavirus and Merkel cell carcinoma.

DeCaprio JA.

Philos Trans R Soc Lond B Biol Sci. 2017 Oct 19;372(1732). pii: 20160276. doi: 10.1098/rstb.2016.0276. Review.

33.

Transcriptional landscape of the human cell cycle.

Liu Y, Chen S, Wang S, Soares F, Fischer M, Meng F, Du Z, Lin C, Meyer C, DeCaprio JA, Brown M, Liu XS, He HH.

Proc Natl Acad Sci U S A. 2017 Mar 28;114(13):3473-3478. doi: 10.1073/pnas.1617636114. Epub 2017 Mar 13.

34.

Merkel Cell Polyomavirus Exhibits Dominant Control of the Tumor Genome and Transcriptome in Virus-Associated Merkel Cell Carcinoma.

Starrett GJ, Marcelus C, Cantalupo PG, Katz JP, Cheng J, Akagi K, Thakuria M, Rabinowits G, Wang LC, Symer DE, Pipas JM, Harris RS, DeCaprio JA.

MBio. 2017 Jan 3;8(1). pii: e02079-16. doi: 10.1128/mBio.02079-16.

35.

Merkel Cell Polyomavirus Small T Antigen Promotes Pro-Glycolytic Metabolic Perturbations Required for Transformation.

Berrios C, Padi M, Keibler MA, Park DE, Molla V, Cheng J, Lee SM, Stephanopoulos G, Quackenbush J, DeCaprio JA.

PLoS Pathog. 2016 Nov 23;12(11):e1006020. doi: 10.1371/journal.ppat.1006020. eCollection 2016 Nov.

36.

Proteomic Landscape of Tissue-Specific Cyclin E Functions in Vivo.

Odajima J, Saini S, Jung P, Ndassa-Colday Y, Ficaro S, Geng Y, Marco E, Michowski W, Wang YE, DeCaprio JA, Litovchick L, Marto J, Sicinski P.

PLoS Genet. 2016 Nov 9;12(11):e1006429. doi: 10.1371/journal.pgen.1006429. eCollection 2016 Nov.

37.

Merkel Cell Carcinoma: A Population Analysis on Survival.

Sridharan V, Muralidhar V, Margalit DN, Tishler RB, DeCaprio JA, Thakuria M, Rabinowits G, Schoenfeld JD.

J Natl Compr Canc Netw. 2016 Oct;14(10):1247-1257.

PMID:
27697979
38.

APC/C and SCF(cyclin F) Constitute a Reciprocal Feedback Circuit Controlling S-Phase Entry.

Choudhury R, Bonacci T, Arceci A, Lahiri D, Mills CA, Kernan JL, Branigan TB, DeCaprio JA, Burke DJ, Emanuele MJ.

Cell Rep. 2016 Sep 20;16(12):3359-3372. doi: 10.1016/j.celrep.2016.08.058.

39.

Integration of TP53, DREAM, MMB-FOXM1 and RB-E2F target gene analyses identifies cell cycle gene regulatory networks.

Fischer M, Grossmann P, Padi M, DeCaprio JA.

Nucleic Acids Res. 2016 Jul 27;44(13):6070-86. doi: 10.1093/nar/gkw523. Epub 2016 Jun 8.

40.

Inhibition of Rb Phosphorylation Leads to mTORC2-Mediated Activation of Akt.

Zhang J, Xu K, Liu P, Geng Y, Wang B, Gan W, Guo J, Wu F, Chin YR, Berrios C, Lien EC, Toker A, DeCaprio JA, Sicinski P, Wei W.

Mol Cell. 2016 Jun 16;62(6):929-942. doi: 10.1016/j.molcel.2016.04.023. Epub 2016 May 26.

41.

Does Arabidopsis thaliana DREAM of cell cycle control?

Fischer M, DeCaprio JA.

EMBO J. 2015 Aug 4;34(15):1987-9. doi: 10.15252/embj.201592196. Epub 2015 Jun 18.

42.

Tumorigenic activity of merkel cell polyomavirus T antigens expressed in the stratified epithelium of mice.

Spurgeon ME, Cheng J, Bronson RT, Lambert PF, DeCaprio JA.

Cancer Res. 2015 Mar 15;75(6):1068-79. doi: 10.1158/0008-5472.CAN-14-2425. Epub 2015 Jan 16.

43.

Malawi polyomavirus is a prevalent human virus that interacts with known tumor suppressors.

Berrios C, Jung J, Primi B, Wang M, Pedamallu C, Duke F, Marcelus C, Cheng J, Garcea RL, Meyerson M, DeCaprio JA.

J Virol. 2015 Jan;89(1):857-62. doi: 10.1128/JVI.02328-14. Epub 2014 Oct 15.

44.

SMCX and components of the TIP60 complex contribute to E2 regulation of the HPV E6/E7 promoter.

Smith JA, Haberstroh FS, White EA, Livingston DM, DeCaprio JA, Howley PM.

Virology. 2014 Nov;468-470:311-321. doi: 10.1016/j.virol.2014.08.022. Epub 2014 Sep 16.

45.

PP2A-mediated regulation of Ras signaling in G2 is essential for stable quiescence and normal G1 length.

Naetar N, Soundarapandian V, Litovchick L, Goguen KL, Sablina AA, Bowman-Colin C, Sicinski P, Hahn WC, DeCaprio JA, Livingston DM.

Mol Cell. 2014 Jun 19;54(6):932-45. doi: 10.1016/j.molcel.2014.04.023. Epub 2014 May 22.

46.

The DREAM complex in antitumor activity of imatinib mesylate in gastrointestinal stromal tumors.

DeCaprio JA, Duensing A.

Curr Opin Oncol. 2014 Jul;26(4):415-21. doi: 10.1097/CCO.0000000000000090. Review.

47.

Loss of the mammalian DREAM complex deregulates chondrocyte proliferation.

Forristal C, Henley SA, MacDonald JI, Bush JR, Ort C, Passos DT, Talluri S, Ishak CA, Thwaites MJ, Norley CJ, Litovchick L, DeCaprio JA, DiMattia G, Holdsworth DW, Beier F, Dick FA.

Mol Cell Biol. 2014 Jun;34(12):2221-34. doi: 10.1128/MCB.01523-13. Epub 2014 Apr 7.

48.

Nuclear interferon-inducible protein 16 promotes silencing of herpesviral and transfected DNA.

Orzalli MH, Conwell SE, Berrios C, DeCaprio JA, Knipe DM.

Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):E4492-501. doi: 10.1073/pnas.1316194110. Epub 2013 Nov 6.

49.

Human papillomavirus type 16 E7 perturbs DREAM to promote cellular proliferation and mitotic gene expression.

DeCaprio JA.

Oncogene. 2014 Jul 31;33(31):4036-8. doi: 10.1038/onc.2013.449. Epub 2013 Oct 28.

50.

The DNA damage and the DNA replication checkpoints converge at the MBF transcription factor.

Ivanova T, Alves-Rodrigues I, Gómez-Escoda B, Dutta C, DeCaprio JA, Rhind N, Hidalgo E, Ayté J.

Mol Biol Cell. 2013 Nov;24(21):3350-7. doi: 10.1091/mbc.E13-05-0257. Epub 2013 Sep 4.

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