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Items: 26

1.

Spatial impacts of a multi-individual grave on microbial and microfaunal communities and soil biogeochemistry.

Keenan SW, Emmons AL, Taylor LS, Phillips G, Mason AR, Mundorff AZ, Bernard EC, Davoren J, DeBruyn JM.

PLoS One. 2018 Dec 12;13(12):e0208845. doi: 10.1371/journal.pone.0208845. eCollection 2018.

2.

Crop Rotations and Poultry Litter Affect Dynamic Soil Chemical Properties and Soil Biota Long Term.

Ashworth AJ, Allen FL, DeBruyn JM, Owens PR, Sams C.

J Environ Qual. 2018 Nov;47(6):1327-1338. doi: 10.2134/jeq2017.12.0465.

PMID:
30512068
3.

Biodegradable Plastic Mulch Films: Impacts on Soil Microbial Communities and Ecosystem Functions.

Bandopadhyay S, Martin-Closas L, Pelacho AM, DeBruyn JM.

Front Microbiol. 2018 Apr 26;9:819. doi: 10.3389/fmicb.2018.00819. eCollection 2018. Review.

4.

Microbial Taxa Distribution Is Associated with Ecological Trophic Cascades along an Elevation Gradient.

Yao F, Yang S, Wang Z, Wang X, Ye J, Wang X, DeBruyn JM, Feng X, Jiang Y, Li H.

Front Microbiol. 2017 Oct 27;8:2071. doi: 10.3389/fmicb.2017.02071. eCollection 2017.

5.

The persistence of human DNA in soil following surface decomposition.

Emmons AL, DeBruyn JM, Mundorff AZ, Cobaugh KL, Cabana GS.

Sci Justice. 2017 Sep;57(5):341-348. doi: 10.1016/j.scijus.2017.05.002. Epub 2017 May 13.

PMID:
28889863
6.

Contrasting seasonal drivers of virus abundance and production in the North Pacific Ocean.

Gainer PJ, Pound HL, Larkin AA, LeCleir GR, DeBruyn JM, Zinser ER, Johnson ZI, Wilhelm SW.

PLoS One. 2017 Sep 7;12(9):e0184371. doi: 10.1371/journal.pone.0184371. eCollection 2017.

7.

Fungal Communities in Rhizosphere Soil under Conservation Tillage Shift in Response to Plant Growth.

Wang Z, Li T, Wen X, Liu Y, Han J, Liao Y, DeBruyn JM.

Front Microbiol. 2017 Jul 11;8:1301. doi: 10.3389/fmicb.2017.01301. eCollection 2017.

8.

Postmortem succession of gut microbial communities in deceased human subjects.

DeBruyn JM, Hauther KA.

PeerJ. 2017 Jun 12;5:e3437. doi: 10.7717/peerj.3437. eCollection 2017.

9.

A Machine Learning Approach for Using the Postmortem Skin Microbiome to Estimate the Postmortem Interval.

Johnson HR, Trinidad DD, Guzman S, Khan Z, Parziale JV, DeBruyn JM, Lents NH.

PLoS One. 2016 Dec 22;11(12):e0167370. doi: 10.1371/journal.pone.0167370. eCollection 2016.

10.

Correction: The Microbiome of Ehrlichia-Infected and Uninfected Lone Star Ticks (Amblyomma americanum).

Trout Fryxell RT, DeBruyn JM.

PLoS One. 2016 May 9;11(5):e0155559. doi: 10.1371/journal.pone.0155559. eCollection 2016.

11.

The Microbiome of Ehrlichia-Infected and Uninfected Lone Star Ticks (Amblyomma americanum).

Trout Fryxell RT, DeBruyn JM.

PLoS One. 2016 Jan 11;11(1):e0146651. doi: 10.1371/journal.pone.0146651. eCollection 2016. Erratum in: PLoS One. 2016;11(5):e0155559.

12.

Estimating Time Since Death from Postmortem Human Gut Microbial Communities.

Hauther KA, Cobaugh KL, Jantz LM, Sparer TE, DeBruyn JM.

J Forensic Sci. 2015 Sep;60(5):1234-40. doi: 10.1111/1556-4029.12828. Epub 2015 Jun 21.

PMID:
26096156
13.

Functional and Structural Succession of Soil Microbial Communities below Decomposing Human Cadavers.

Cobaugh KL, Schaeffer SM, DeBruyn JM.

PLoS One. 2015 Jun 12;10(6):e0130201. doi: 10.1371/journal.pone.0130201. eCollection 2015.

14.

Integrated metagenomics and metatranscriptomics analyses of root-associated soil from transgenic switchgrass.

Chauhan A, Smartt A, Wang J, Utturkar S, Frank A, Bi M, Liu J, Williams D, Xu T, Eldridge M, Arreaza A, Rogers A, Gonzalez HC, Layton AC, Baxter HL, Mazarei M, DeBruyn JM, Stewart CN Jr, Brown SD, Hauser LJ, Sayler GS.

Genome Announc. 2014 Aug 14;2(4). pii: e00777-14. doi: 10.1128/genomeA.00777-14.

15.

Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum.

Debruyn JM, Radosevich M, Wommack KE, Polson SW, Hauser LJ, Fawaz MN, Korlach J, Tsai YC.

Genome Announc. 2014 Apr 3;2(2). pii: e00226-14. doi: 10.1128/genomeA.00226-14.

16.

Temporal changes in particle-associated microbial communities after interception by nonlethal sediment traps.

LeCleir GR, DeBruyn JM, Maas EW, Boyd PW, Wilhelm SW.

FEMS Microbiol Ecol. 2014 Jan;87(1):153-63. doi: 10.1111/1574-6941.12213. Epub 2013 Oct 7.

17.

Gemmatirosa kalamazoonesis gen. nov., sp. nov., a member of the rarely-cultivated bacterial phylum Gemmatimonadetes.

DeBruyn JM, Fawaz MN, Peacock AD, Dunlap JR, Nixon LT, Cooper KE, Radosevich M.

J Gen Appl Microbiol. 2013;59(4):305-12. No abstract available.

18.

Complete genome sequence of Thauera aminoaromatica strain MZ1T.

Jiang K, Sanseverino J, Chauhan A, Lucas S, Copeland A, Lapidus A, Del Rio TG, Dalin E, Tice H, Bruce D, Goodwin L, Pitluck S, Sims D, Brettin T, Detter JC, Han C, Chang YJ, Larimer F, Land M, Hauser L, Kyrpides NC, Mikhailova N, Moser S, Jegier P, Close D, Debruyn JM, Wang Y, Layton AC, Allen MS, Sayler GS.

Stand Genomic Sci. 2012 Jul 30;6(3):325-35. doi: 10.4056/sigs.2696029. Epub 2012 Jul 20.

19.

Teaching the Central Dogma of Molecular Biology using Jewelry.

Debruyn JM.

J Microbiol Biol Educ. 2012 May 3;13(1):62-4. doi: 10.1128/jmbe.v13i1.356. Print 2012. No abstract available.

20.

Production of viruses during a spring phytoplankton bloom in the South Pacific Ocean near of New Zealand.

Matteson AR, Loar SN, Pickmere S, DeBruyn JM, Ellwood MJ, Boyd PW, Hutchins DA, Wilhelm SW.

FEMS Microbiol Ecol. 2012 Mar;79(3):709-19. doi: 10.1111/j.1574-6941.2011.01251.x. Epub 2011 Dec 6.

21.

Viral and bacterial abundance and production in the Western Pacific Ocean and the relation to other oceanic realms.

Rowe JM, DeBruyn JM, Poorvin L, LeCleir GR, Johnson ZI, Zinser ER, Wilhelm SW.

FEMS Microbiol Ecol. 2012 Feb;79(2):359-70. doi: 10.1111/j.1574-6941.2011.01223.x. Epub 2011 Nov 1.

22.

Horizontal transfer of PAH catabolism genes in Mycobacterium: evidence from comparative genomics and isolated pyrene-degrading bacteria.

DeBruyn JM, Mead TJ, Sayler GS.

Environ Sci Technol. 2012 Jan 3;46(1):99-106. doi: 10.1021/es201607y. Epub 2011 Sep 23.

PMID:
21899303
23.

Global biogeography and quantitative seasonal dynamics of Gemmatimonadetes in soil.

DeBruyn JM, Nixon LT, Fawaz MN, Johnson AM, Radosevich M.

Appl Environ Microbiol. 2011 Sep;77(17):6295-300. doi: 10.1128/AEM.05005-11. Epub 2011 Jul 15.

24.

PAH biodegradative genotypes in Lake Erie sediments: evidence for broad geographical distribution of pyrene-degrading mycobacteria.

Debruyn JM, Mead TJ, Wilhelm SW, Sayler GS.

Environ Sci Technol. 2009 May 15;43(10):3467-73.

PMID:
19544841
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