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De novo design of self-assembling helical protein filaments.

Shen H, Fallas JA, Lynch E, Sheffler W, Parry B, Jannetty N, Decarreau J, Wagenbach M, Vicente JJ, Chen J, Wang L, Dowling Q, Oberdorfer G, Stewart L, Wordeman L, De Yoreo J, Jacobs-Wagner C, Kollman J, Baker D.

Science. 2018 Nov 9;362(6415):705-709. doi: 10.1126/science.aau3775.


Carbon Nanotube Porins in Amphiphilic Block Copolymers as Fully Synthetic Mimics of Biological Membranes.

Sanborn JR, Chen X, Yao YC, Hammons JA, Tunuguntla RH, Zhang Y, Newcomb CC, Soltis JA, De Yoreo JJ, Van Buuren A, Parikh AN, Noy A.

Adv Mater. 2018 Oct 17:e1803355. doi: 10.1002/adma.201803355. [Epub ahead of print]


Effects of Ionic Strength, Salt, and pH on Aggregation of Boehmite Nanocrystals: Tumbler Small-Angle Neutron and X-ray Scattering and Imaging Analysis.

Anovitz LM, Zhang X, Soltis JA, Nakouzi E, Krzysko AJ, Chun J, Schenter GK, Graham TR, Rosso KM, De Yoreo JJ, Stack AG, Bleuel M, Gagnon C, Mildner DFR, Ilavsky J, Kuzmenko I.

Langmuir. 2018 Oct 15. doi: 10.1021/acs.langmuir.8b00865. [Epub ahead of print]


Accessing crystal-crystal interaction forces with oriented nanocrystal atomic force microscopy probes.

Zhang X, He Y, Liu J, Bowden ME, Kovarik L, Mao SX, Wang C, De Yoreo JJ, Rosso KM.

Nat Protoc. 2018 Sep;13(9):2005-2030. doi: 10.1038/s41596-018-0027-4.


Impact of Solution Chemistry and Particle Anisotropy on the Collective Dynamics of Oriented Aggregation.

Nakouzi E, Soltis JA, Legg BA, Schenter GK, Zhang X, Graham TR, Rosso KM, Anovitz LM, De Yoreo JJ, Chun J.

ACS Nano. 2018 Oct 23;12(10):10114-10122. doi: 10.1021/acsnano.8b04909. Epub 2018 Sep 19.


Dynamically resolved self-assembly of S-layer proteins on solid surfaces.

Stel B, Cometto F, Rad B, De Yoreo JJ, Lingenfelder M.

Chem Commun (Camb). 2018 Sep 11;54(73):10264-10267. doi: 10.1039/c8cc04597f.


Near surface nucleation and particle mediated growth of colloidal Au nanocrystals.

Cheng Y, Tao J, Zhu G, Soltis JA, Legg BA, Nakouzi E, De Yoreo JJ, Sushko ML, Liu J.

Nanoscale. 2018 Jul 5;10(25):11907-11912. doi: 10.1039/c8nr03408g.


Controlled synthesis of highly-branched plasmonic gold nanoparticles through peptoid engineering.

Yan F, Liu L, Walsh TR, Gong Y, El-Khoury PZ, Zhang Y, Zhu Z, De Yoreo JJ, Engelhard MH, Zhang X, Chen CL.

Nat Commun. 2018 Jun 13;9(1):2327. doi: 10.1038/s41467-018-04789-2.


Nanoparticle Immobilization for Controllable Experiments in Liquid-Cell Transmission Electron Microscopy.

Robertson AW, Zhu G, Mehdi BL, Jacobs RMJ, De Yoreo J, Browning ND.

ACS Appl Mater Interfaces. 2018 Jul 5;10(26):22801-22808. doi: 10.1021/acsami.8b03688. Epub 2018 Jun 22.


Growth of Au and ZnS nanostructures via engineered peptide and M13 bacteriophage templates.

Chung S, Chung WJ, Wang D, Lee SW, De Yoreo JJ.

Soft Matter. 2018 Apr 25;14(16):2996-3002. doi: 10.1039/c8sm00090e.


Peptide-Based Bioinspired Approach to Regrowing Multilayered Aprismatic Enamel.

Mukherjee K, Ruan Q, Nutt S, Tao J, De Yoreo JJ, Moradian-Oldak J.

ACS Omega. 2018 Mar 31;3(3):2546-2557. doi: 10.1021/acsomega.7b02004. Epub 2018 Mar 2.


Using biomimetic polymers in place of noncollagenous proteins to achieve functional remineralization of dentin tissues.

Chien YC, Tao J, Saeki K, Chin AF, Lau JL, Chen CL, Zuckermann RN, Marshall SJ, Marshall GW, De Yoreo JJ.

ACS Biomater Sci Eng. 2017 Dec 11;3(12):3469-3479. doi: 10.1021/acsbiomaterials.7b00378. Epub 2017 Oct 18.


Early stage structural development of prototypical zeolitic imidazolate framework (ZIF) in solution.

Terban MW, Banerjee D, Ghose S, Medasani B, Shukla A, Legg BA, Zhou Y, Zhu Z, Sushko ML, De Yoreo JJ, Liu J, Thallapally PK, Billinge SJL.

Nanoscale. 2018 Mar 1;10(9):4291-4300. doi: 10.1039/c7nr07949d.


Supersaturated calcium carbonate solutions are classical.

Henzler K, Fetisov EO, Galib M, Baer MD, Legg BA, Borca C, Xto JM, Pin S, Fulton JL, Schenter GK, Govind N, Siepmann JI, Mundy CJ, Huthwelker T, De Yoreo JJ.

Sci Adv. 2018 Jan 26;4(1):eaao6283. doi: 10.1126/sciadv.aao6283. eCollection 2018 Jan.


Defect-Free Encapsulation of Fe0 in 2D Fused Organic Networks as a Durable Oxygen Reduction Electrocatalyst.

Kim SJ, Mahmood J, Kim C, Han GF, Kim SW, Jung SM, Zhu G, De Yoreo JJ, Kim G, Baek JB.

J Am Chem Soc. 2018 Feb 7;140(5):1737-1742. doi: 10.1021/jacs.7b10663. Epub 2018 Jan 19.


Author Correction: Developing a molecular picture of soil organic matter-mineral interactions by quantifying organo-mineral binding.

Newcomb CJ, Qafoku NP, Grate JW, Bailey VL, De Yoreo JJ.

Nat Commun. 2017 Dec 5;8(1):2017. doi: 10.1038/s41467-017-02125-8.


Prebiotic RNA polymerisation: energetics of nucleotide adsorption and polymerisation on clay mineral surfaces.

Jelavić S, Tobler DJ, Hassenkam T, De Yoreo JJ, Stipp SLS, Sand KK.

Chem Commun (Camb). 2017 Nov 23;53(94):12700-12703. doi: 10.1039/c7cc04276k.


Direction-specific interaction forces underlying zinc oxide crystal growth by oriented attachment.

Zhang X, Shen Z, Liu J, Kerisit SN, Bowden ME, Sushko ML, De Yoreo JJ, Rosso KM.

Nat Commun. 2017 Oct 10;8(1):835. doi: 10.1038/s41467-017-00844-6.


A classical view on nonclassical nucleation.

Smeets PJM, Finney AR, Habraken WJEM, Nudelman F, Friedrich H, Laven J, De Yoreo JJ, Rodger PM, Sommerdijk NAJM.

Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):E7882-E7890. doi: 10.1073/pnas.1700342114. Epub 2017 Sep 5.


Developing a molecular picture of soil organic matter-mineral interactions by quantifying organo-mineral binding.

Newcomb CJ, Qafoku NP, Grate JW, Bailey VL, De Yoreo JJ.

Nat Commun. 2017 Aug 30;8(1):396. doi: 10.1038/s41467-017-00407-9. Erratum in: Nat Commun. 2017 Dec 5;8(1):2017.


The energetics of prenucleation clusters in lattice solutions.

Legg BA, De Yoreo JJ.

J Chem Phys. 2016 Dec 7;145(21):211921. doi: 10.1063/1.4964489.


Polyaspartic acid facilitates oxolation within iron(iii) oxide pre-nucleation clusters and drives the formation of organic-inorganic composites.

Scheck J, Drechsler M, Ma X, Stöckl MT, Konsek J, Schwaderer JB, Stadler SM, De Yoreo JJ, Gebauer D.

J Chem Phys. 2016 Dec 7;145(21):211917. doi: 10.1063/1.4963738.


Trends in mica-mica adhesion reflect the influence of molecular details on long-range dispersion forces underlying aggregation and coalignment.

Li D, Chun J, Xiao D, Zhou W, Cai H, Zhang L, Rosso KM, Mundy CJ, Schenter GK, De Yoreo JJ.

Proc Natl Acad Sci U S A. 2017 Jul 18;114(29):7537-7542. doi: 10.1073/pnas.1621186114. Epub 2017 Jul 5.


Direction-specific van der Waals attraction between rutile TiO2 nanocrystals.

Zhang X, He Y, Sushko ML, Liu J, Luo L, De Yoreo JJ, Mao SX, Wang C, Rosso KM.

Science. 2017 Apr 28;356(6336):434-437. doi: 10.1126/science.aah6902.


Tuning crystallization pathways through sequence engineering of biomimetic polymers.

Ma X, Zhang S, Jiao F, Newcomb CJ, Zhang Y, Prakash A, Liao Z, Baer MD, Mundy CJ, Pfaendtner J, Noy A, Chen CL, De Yoreo JJ.

Nat Mater. 2017 Jul;16(7):767-774. doi: 10.1038/nmat4891. Epub 2017 Apr 17.


Trace Uranium Partitioning in a Multiphase Nano-FeOOH System.

McBriarty ME, Soltis JA, Kerisit S, Qafoku O, Bowden ME, Bylaska EJ, De Yoreo JJ, Ilton ES.

Environ Sci Technol. 2017 May 2;51(9):4970-4977. doi: 10.1021/acs.est.7b00432. Epub 2017 Apr 21.


Formation of Reversible Solid Electrolyte Interface on Graphite Surface from Concentrated Electrolytes.

Lu D, Tao J, Yan P, Henderson WA, Li Q, Shao Y, Helm ML, Borodin O, Graff GL, Polzin B, Wang CM, Engelhard M, Zhang JG, De Yoreo JJ, Liu J, Xiao J.

Nano Lett. 2017 Mar 8;17(3):1602-1609. doi: 10.1021/acs.nanolett.6b04766. Epub 2017 Feb 15.


Double Epitaxy as a Paradigm for Templated Growth of Highly Ordered Three-Dimensional Mesophase Crystals.

Shin Y, Tao J, Arey BW, Wang C, Exarhos GJ, De Yoreo JJ, Sushko ML, Liu J.

ACS Nano. 2016 Sep 27;10(9):8670-5. doi: 10.1021/acsnano.6b03999. Epub 2016 Sep 6.


A Microkinetic Model of Calcite Step Growth.

Andersson MP, Dobberschütz S, Sand KK, Tobler DJ, De Yoreo JJ, Stipp SL.

Angew Chem Int Ed Engl. 2016 Sep 5;55(37):11086-90. doi: 10.1002/anie.201604357. Epub 2016 Aug 17.


Microscopy techniques for investigating the control of organic constituents on biomineralization.

Hendley CT 4th, Tao J, Kunitake JA, De Yoreo JJ, Estroff LA.

MRS Bull. 2015 Jun;40(6):480-489.


Direct observation of mineral-organic composite formation reveals occlusion mechanism.

Rae Cho K, Kim YY, Yang P, Cai W, Pan H, Kulak AN, Lau JL, Kulshreshtha P, Armes SP, Meldrum FC, De Yoreo JJ.

Nat Commun. 2016 Jan 6;7:10187. doi: 10.1038/ncomms10187.


Matrix metalloproteinase-20 mediates dental enamel biomineralization by preventing protein occlusion inside apatite crystals.

Prajapati S, Tao J, Ruan Q, De Yoreo JJ, Moradian-Oldak J.

Biomaterials. 2016 Jan;75:260-270. doi: 10.1016/j.biomaterials.2015.10.031. Epub 2015 Oct 22.


Sequence-Defined Energetic Shifts Control the Disassembly Kinetics and Microstructure of Amelogenin Adsorbed onto Hydroxyapatite (100).

Tao J, Buchko GW, Shaw WJ, De Yoreo JJ, Tarasevich BJ.

Langmuir. 2015 Sep 29;31(38):10451-60. doi: 10.1021/acs.langmuir.5b02549. Epub 2015 Sep 18.


CRYSTAL GROWTH. Crystallization by particle attachment in synthetic, biogenic, and geologic environments.

De Yoreo JJ, Gilbert PU, Sommerdijk NA, Penn RL, Whitelam S, Joester D, Zhang H, Rimer JD, Navrotsky A, Banfield JF, Wallace AF, Michel FM, Meldrum FC, Cölfen H, Dove PM.

Science. 2015 Jul 31;349(6247):aaa6760. doi: 10.1126/science.aaa6760. Review.


Solvent and additive interactions as determinants in the nucleation pathway: general discussion.

Sun CC, Sun W, Price S, Hughes C, Ter Horst J, Veesler S, Lewtas K, Myerson A, Pan H, Coquerel G, van den Ende J, Meekes H, Mazzotti M, Rosbottom I, Taulelle F, Black S, Mackenzie A, Janbon S, Vekilov P, Threlfall T, Turner T, Back K, Cuppen H, Toroz D, Sefcik J, Lovelock J, Hammond R, Candoni N, Simone E, Ward M, Bertran CA, Vetter T, Sear R, De Yoreo J, Davey R, Anwar J, Santiso E, Wu DT, Roberts K, Peters B, Schroeder S, Jones F, Rasmuson A, Cölfen H, Zeglinski J, Salvalaglio M.

Faraday Discuss. 2015;179:383-420. doi: 10.1039/c5fd90038g. Epub 2015 Jun 17. No abstract available.


Nucleation in complex multi-component and multi-phase systems: general discussion.

Price S, Rimez B, Sun W, Peters B, Christenson H, Hughes C, Sun CC, Veesler S, Pan H, Brandel C, Biscans B, Meekes H, Rosbottom I, Roth WJ, Seton L, Taulelle F, Black S, Threlfall T, Vekilov P, Poornachary S, Diemand J, Toroz D, Salvalaglio M, Tipduangta P, Sefcik J, Booth S, Rasmuson A, Janbon S, Ter Horst J, Simone E, Hammond R, Bertran CA, Vetter T, Sear R, De Yoreo J, Harris K, Ristic R, Kavanagh A, Roberts K, Breynaert E, Myerson A, Coquerel G, Wu D, Cölfen H, Cuppen H, Smets M, Wu DT.

Faraday Discuss. 2015;179:503-42. doi: 10.1039/c5fd90039e. Epub 2015 Jun 17. No abstract available.


Time and space resolved methods: general discussion.

Sun W, Booth S, Myerson A, Hughes C, Pan H, Coquerel G, Brandel C, Meekes H, Mazzotti M, Fabian L, Black S, Vekilov P, Back K, Toroz D, Lovelock J, Sefcik J, Rasmuson A, Breynaert E, Sear R, Hammond R, Ward M, Threlfall T, De Yoreo J, Davey R, Ristic R, Lewtas K, Roberts K, Hare A, Gich M, Cölfen H, Likhatskiy M, ter Horst J, Sommerdijk N.

Faraday Discuss. 2015;179:247-67. doi: 10.1039/c5fd90037a. Epub 2015 Jun 16. No abstract available.


Molecular self-assembly and clustering in nucleation processes: general discussion.

Price S, Veesler S, Pan H, Lewtas K, Smets M, Rimez B, Myerson A, Hughes C, Hare A, Zhang F, Meekes H, Mazzotti M, Rosbottom I, Khamar D, van den Ende J, Fabian L, Black S, Taulelle F, Gich M, Vekilov P, Toroz D, Bertran CA, Sefcik J, Schroeder S, Booth S, Rasmuson A, Breynaert E, Simone E, Hammond R, Sear R, de Yoreo J, Davey R, Anwar J, Ristic R, Camacho Corzo DM, Roberts K, Harris K, Colfen H, Turner T.

Faraday Discuss. 2015;179:155-97. doi: 10.1039/c5fd90036k. Epub 2015 Jun 15. No abstract available.


Effect of Otoconial Proteins Fetuin A, Osteopontin, and Otoconin 90 on the Nucleation and Growth of Calcite.

Hong M, Moreland KT, Chen J, Teng HH, Thalmann R, De Yoreo JJ.

Cryst Growth Des. 2015 Jan 7;15(1):129-136. Epub 2014 Oct 30.


Calcium carbonate nucleation driven by ion binding in a biomimetic matrix revealed by in situ electron microscopy.

Smeets PJ, Cho KR, Kempen RG, Sommerdijk NA, De Yoreo JJ.

Nat Mater. 2015 Apr;14(4):394-9. doi: 10.1038/nmat4193. Epub 2015 Jan 26.


Energetic basis for the molecular-scale organization of bone.

Tao J, Battle KC, Pan H, Salter EA, Chien YC, Wierzbicki A, De Yoreo JJ.

Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):326-31. doi: 10.1073/pnas.1404481112. Epub 2014 Dec 24.


In situ TEM imaging of CaCO₃ nucleation reveals coexistence of direct and indirect pathways.

Nielsen MH, Aloni S, De Yoreo JJ.

Science. 2014 Sep 5;345(6201):1158-62. doi: 10.1126/science.1254051.


Hierarchical assembly of plasmonic nanostructures using virus capsid scaffolds on DNA origami templates.

Wang D, Capehart SL, Pal S, Liu M, Zhang L, Schuck PJ, Liu Y, Yan H, Francis MB, De Yoreo JJ.

ACS Nano. 2014 Aug 26;8(8):7896-904. doi: 10.1021/nn5015819. Epub 2014 Jul 18.


A unified description of attachment-based crystal growth.

Zhang H, De Yoreo JJ, Banfield JF.

ACS Nano. 2014 Jul 22;8(7):6526-30. doi: 10.1021/nn503145w. Epub 2014 Jul 7.


In vitro calcite crystal morphology is modulated by otoconial proteins otolin-1 and otoconin-90.

Moreland KT, Hong M, Lu W, Rowley CW, Ornitz DM, De Yoreo JJ, Thalmann R.

PLoS One. 2014 Apr 18;9(4):e95333. doi: 10.1371/journal.pone.0095333. eCollection 2014.


Investigating processes of nanocrystal formation and transformation via liquid cell TEM.

Nielsen MH, Li D, Zhang H, Aloni S, Han TY, Frandsen C, Seto J, Banfield JF, Cölfen H, De Yoreo JJ.

Microsc Microanal. 2014 Apr;20(2):425-36. doi: 10.1017/S1431927614000294. Epub 2014 Mar 14.


Self-assembly of collagen on flat surfaces: the interplay of collagen-collagen and collagen-substrate interactions.

Narayanan B, Gilmer GH, Tao J, De Yoreo JJ, Ciobanu CV.

Langmuir. 2014 Feb 11;30(5):1343-50. doi: 10.1021/la4043364. Epub 2014 Jan 28.


Reconciling disparate views of template-directed nucleation through measurement of calcite nucleation kinetics and binding energies.

Hamm LM, Giuffre AJ, Han N, Tao J, Wang D, De Yoreo JJ, Dove PM.

Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1304-9. doi: 10.1073/pnas.1312369111. Epub 2014 Jan 13.


Methods in Enzymology. Research methods in biomineralization science. Preface.

De Yoreo JJ.

Methods Enzymol. 2013;532:xvii. doi: 10.1016/B978-0-12-416617-2.10000-1. No abstract available.


Design, fabrication, and applications of in situ fluid cell TEM.

Li D, Nielsen MH, De Yoreo JJ.

Methods Enzymol. 2013;532:147-64. doi: 10.1016/B978-0-12-416617-2.00007-2.


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