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Items: 1 to 50 of 139

1.

A conserved GH17 glycosyl hydrolase from plant pathogenic Dothideomycetes releases a DAMP causing cell death in tomato.

Ökmen B, Bachmann D, de Wit PJGM.

Mol Plant Pathol. 2019 Dec;20(12):1710-1721. doi: 10.1111/mpp.12872. Epub 2019 Oct 11.

PMID:
31603622
2.

Assignment of a dubious gene cluster to melanin biosynthesis in the tomato fungal pathogen Cladosporium fulvum.

Griffiths SA, Cox RJ, Overdijk EJR, Mesarich CH, Saccomanno B, Lazarus CM, de Wit PJGM, Collemare J.

PLoS One. 2018 Dec 31;13(12):e0209600. doi: 10.1371/journal.pone.0209600. eCollection 2018.

3.

Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance.

Kema GHJ, Mirzadi Gohari A, Aouini L, Gibriel HAY, Ware SB, van den Bosch F, Manning-Smith R, Alonso-Chavez V, Helps J, Ben M'Barek S, Mehrabi R, Diaz-Trujillo C, Zamani E, Schouten HJ, van der Lee TAJ, Waalwijk C, de Waard MA, de Wit PJGM, Verstappen ECP, Thomma BPHJ, Meijer HJG, Seidl MF.

Nat Genet. 2018 Mar;50(3):375-380. doi: 10.1038/s41588-018-0052-9. Epub 2018 Feb 12.

PMID:
29434356
4.

Mycosphaerellaceae - Chaos or clarity?

Videira SIR, Groenewald JZ, Nakashima C, Braun U, Barreto RW, de Wit PJGM, Crous PW.

Stud Mycol. 2017 Jun;87:257-421. doi: 10.1016/j.simyco.2017.09.003. Epub 2017 Sep 28.

5.

Specific Hypersensitive Response-Associated Recognition of New Apoplastic Effectors from Cladosporium fulvum in Wild Tomato.

Mesarich CH, Ӧkmen B, Rovenich H, Griffiths SA, Wang C, Karimi Jashni M, Mihajlovski A, Collemare J, Hunziker L, Deng CH, van der Burgt A, Beenen HG, Templeton MD, Bradshaw RE, de Wit PJGM.

Mol Plant Microbe Interact. 2018 Jan;31(1):145-162. doi: 10.1094/MPMI-05-17-0114-FI. Epub 2017 Nov 16.

PMID:
29144204
6.

A new mechanism for reduced sensitivity to demethylation-inhibitor fungicides in the fungal banana black Sigatoka pathogen Pseudocercospora fijiensis.

Diaz-Trujillo C, Chong P, Stergiopoulos I, Cordovez V, Guzman M, De Wit PJGM, Meijer HJG, Scalliet G, Sierotzki H, Lilia Peralta E, Arango Isaza RE, Kema GHJ.

Mol Plant Pathol. 2018 Jun;19(6):1491-1503. doi: 10.1111/mpp.12637. Epub 2018 Feb 13.

7.

Fungal Plant Pathogenesis Mediated by Effectors.

De Wit PJ, Testa AC, Oliver RP.

Microbiol Spectr. 2016 Dec;4(6). doi: 10.1128/microbiolspec.FUNK-0021-2016. Review.

PMID:
28087929
8.

Down-regulation of cladofulvin biosynthesis is required for biotrophic growth of Cladosporium fulvum on tomato.

Griffiths S, Mesarich CH, Overdijk EJR, Saccomanno B, de Wit PJGM, Collemare J.

Mol Plant Pathol. 2018 Feb;19(2):369-380. doi: 10.1111/mpp.12527. Epub 2017 Feb 6.

9.

Apoplastic fungal effectors in historic perspective; a personal view.

De Wit PJ.

New Phytol. 2016 Dec;212(4):805-813. doi: 10.1111/nph.14144. Epub 2016 Aug 15. No abstract available.

10.

Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control.

Arango Isaza RE, Diaz-Trujillo C, Dhillon B, Aerts A, Carlier J, Crane CF, V de Jong T, de Vries I, Dietrich R, Farmer AD, Fortes Fereira C, Garcia S, Guzman M, Hamelin RC, Lindquist EA, Mehrabi R, Quiros O, Schmutz J, Shapiro H, Reynolds E, Scalliet G, Souza M Jr, Stergiopoulos I, Van der Lee TA, De Wit PJ, Zapater MF, Zwiers LH, Grigoriev IV, Goodwin SB, Kema GH.

PLoS Genet. 2016 Aug 11;12(8):e1005876. doi: 10.1371/journal.pgen.1005876. eCollection 2016 Aug. Erratum in: PLoS Genet. 2016 Oct 4;12 (10 ):e1006365.

11.

Elucidation of cladofulvin biosynthesis reveals a cytochrome P450 monooxygenase required for anthraquinone dimerization.

Griffiths S, Mesarich CH, Saccomanno B, Vaisberg A, De Wit PJ, Cox R, Collemare J.

Proc Natl Acad Sci U S A. 2016 Jun 21;113(25):6851-6. doi: 10.1073/pnas.1603528113. Epub 2016 Jun 6.

12.

Cladosporium fulvum Effectors: Weapons in the Arms Race with Tomato.

de Wit PJ.

Annu Rev Phytopathol. 2016 Aug 4;54:1-23. doi: 10.1146/annurev-phyto-011516-040249. Epub 2016 May 23. Review.

PMID:
27215970
13.

SnTox1, a Parastagonospora nodorum necrotrophic effector, is a dual-function protein that facilitates infection while protecting from wheat-produced chitinases.

Liu Z, Gao Y, Kim YM, Faris JD, Shelver WL, de Wit PJ, Xu SS, Friesen TL.

New Phytol. 2016 Aug;211(3):1052-64. doi: 10.1111/nph.13959. Epub 2016 Apr 4.

14.

Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry.

de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE.

PLoS Genet. 2015 Dec 22;11(12):e1005775. doi: 10.1371/journal.pgen.1005775. eCollection 2015 Dec. No abstract available.

15.

A Survey on Occurrence of Cladosporium fulvum Identifies Race 0 and Race 2 in Tomato-Growing Areas of Argentina.

Medina R, López SMY, Franco MEE, Rollan C, Ronco BL, Saparrat MCN, De Wit PJGM, Balatti PA.

Plant Dis. 2015 Dec;99(12):1732-1737. doi: 10.1094/PDIS-12-14-1270-RE. Epub 2015 Oct 4.

PMID:
30699511
16.

Regulation of secondary metabolite production in the fungal tomato pathogen Cladosporium fulvum.

Griffiths S, Saccomanno B, de Wit PJ, Collemare J.

Fungal Genet Biol. 2015 Nov;84:52-61. doi: 10.1016/j.fgb.2015.09.009. Epub 2015 Sep 28.

PMID:
26415644
17.

The battle in the apoplast: further insights into the roles of proteases and their inhibitors in plant-pathogen interactions.

Jashni MK, Mehrabi R, Collemare J, Mesarich CH, de Wit PJ.

Front Plant Sci. 2015 Aug 3;6:584. doi: 10.3389/fpls.2015.00584. eCollection 2015. Review.

18.

Flexible gateway constructs for functional analyses of genes in plant pathogenic fungi.

Mehrabi R, Mirzadi Gohari A, da Silva GF, Steinberg G, Kema GH, de Wit PJ.

Fungal Genet Biol. 2015 Jun;79:186-92. doi: 10.1016/j.fgb.2015.03.016.

PMID:
26092806
19.

FPLC and liquid-chromatography mass spectrometry identify candidate necrosis-inducing proteins from culture filtrates of the fungal wheat pathogen Zymoseptoria tritici.

Ben M'Barek S, Cordewener JH, Tabib Ghaffary SM, van der Lee TA, Liu Z, Mirzadi Gohari A, Mehrabi R, America AH, Robert O, Friesen TL, Hamza S, Stergiopoulos I, de Wit PJ, Kema GH.

Fungal Genet Biol. 2015 Jun;79:54-62. doi: 10.1016/j.fgb.2015.03.015.

PMID:
26092790
20.

Proteome catalog of Zymoseptoria tritici captured during pathogenesis in wheat.

Ben M'Barek S, Cordewener JH, van der Lee TA, America AH, Mirzadi Gohari A, Mehrabi R, Hamza S, de Wit PJ, Kema GH.

Fungal Genet Biol. 2015 Jun;79:42-53. doi: 10.1016/j.fgb.2015.04.018. Erratum in: Fungal Genet Biol. 2015 Sep;82:291.

PMID:
26092789
21.

Novel Introner-Like Elements in fungi Are Involved in Parallel Gains of Spliceosomal Introns.

Collemare J, Beenen HG, Crous PW, de Wit PJ, van der Burgt A.

PLoS One. 2015 Jun 5;10(6):e0129302. doi: 10.1371/journal.pone.0129302. eCollection 2015.

22.

Synergistic Action of a Metalloprotease and a Serine Protease from Fusarium oxysporum f. sp. lycopersici Cleaves Chitin-Binding Tomato Chitinases, Reduces Their Antifungal Activity, and Enhances Fungal Virulence.

Jashni MK, Dols IH, Iida Y, Boeren S, Beenen HG, Mehrabi R, Collemare J, de Wit PJ.

Mol Plant Microbe Interact. 2015 Sep;28(9):996-1008. doi: 10.1094/MPMI-04-15-0074-R. Epub 2015 Aug 10.

23.

Novel Mutations Detected in Avirulence Genes Overcoming Tomato Cf Resistance Genes in Isolates of a Japanese Population of Cladosporium fulvum.

Iida Y, van 't Hof P, Beenen H, Mesarich C, Kubota M, Stergiopoulos I, Mehrabi R, Notsu A, Fujiwara K, Bahkali A, Abd-Elsalam K, Collemare J, de Wit PJ.

PLoS One. 2015 Apr 22;10(4):e0123271. doi: 10.1371/journal.pone.0123271. eCollection 2015.

24.

A conserved proline residue in Dothideomycete Avr4 effector proteins is required to trigger a Cf-4-dependent hypersensitive response.

Mesarich CH, Stergiopoulos I, Beenen HG, Cordovez V, Guo Y, Karimi Jashni M, Bradshaw RE, de Wit PJ.

Mol Plant Pathol. 2016 Jan;17(1):84-95. doi: 10.1111/mpp.12265. Epub 2015 May 7.

25.

Effector-triggered defence against apoplastic fungal pathogens.

Stotz HU, Mitrousia GK, de Wit PJ, Fitt BD.

Trends Plant Sci. 2014 Aug;19(8):491-500. doi: 10.1016/j.tplants.2014.04.009. Epub 2014 May 22. Review.

26.

Transcriptome sequencing uncovers the Avr5 avirulence gene of the tomato leaf mold pathogen Cladosporium fulvum.

Mesarich CH, Griffiths SA, van der Burgt A, Okmen B, Beenen HG, Etalo DW, Joosten MH, de Wit PJ.

Mol Plant Microbe Interact. 2014 Aug;27(8):846-57. doi: 10.1094/MPMI-02-14-0050-R.

27.

Relocation of genes generates non-conserved chromosomal segments in Fusarium graminearum that show distinct and co-regulated gene expression patterns.

Zhao C, Waalwijk C, de Wit PJ, Tang D, van der Lee T.

BMC Genomics. 2014 Mar 13;15:191. doi: 10.1186/1471-2164-15-191.

28.

Functional analysis of the conserved transcriptional regulator CfWor1 in Cladosporium fulvum reveals diverse roles in the virulence of plant pathogenic fungi.

Okmen B, Collemare J, Griffiths S, van der Burgt A, Cox R, de Wit PJ.

Mol Microbiol. 2014 Apr;92(1):10-27. doi: 10.1111/mmi.12535. Epub 2014 Feb 27.

29.

Secondary metabolism and biotrophic lifestyle in the tomato pathogen Cladosporium fulvum.

Collemare J, Griffiths S, Iida Y, Karimi Jashni M, Battaglia E, Cox RJ, de Wit PJ.

PLoS One. 2014 Jan 17;9(1):e85877. doi: 10.1371/journal.pone.0085877. eCollection 2014.

30.

Automated alignment-based curation of gene models in filamentous fungi.

van der Burgt A, Severing E, Collemare J, de Wit PJ.

BMC Bioinformatics. 2014 Jan 16;15:19. doi: 10.1186/1471-2105-15-19.

31.

Pseudogenization in pathogenic fungi with different host plants and lifestyles might reflect their evolutionary past.

van der Burgt A, Karimi Jashni M, Bahkali AH, de Wit PJ.

Mol Plant Pathol. 2014 Feb;15(2):133-44. doi: 10.1111/mpp.12072. Epub 2013 Oct 28.

32.

Molecular characterization and functional analyses of ZtWor1, a transcriptional regulator of the fungal wheat pathogen Zymoseptoria tritici.

Mirzadi Gohari A, Mehrabi R, Robert O, Ince IA, Boeren S, Schuster M, Steinberg G, de Wit PJ, Kema GH.

Mol Plant Pathol. 2014 May;15(4):394-405. doi: 10.1111/mpp.12102. Epub 2013 Dec 17.

33.

Positive selection and intragenic recombination contribute to high allelic diversity in effector genes of Mycosphaerella fijiensis, causal agent of the black leaf streak disease of banana.

Stergiopoulos I, Cordovez V, Okmen B, Beenen HG, Kema GH, de Wit PJ.

Mol Plant Pathol. 2014 Jun;15(5):447-60. doi: 10.1111/mpp.12104. Epub 2013 Dec 16.

34.

At the origin of spliceosomal introns: Is multiplication of introner-like elements the main mechanism of intron gain in fungi?

Collemare J, van der Burgt A, de Wit PJ.

Commun Integr Biol. 2013 Mar 1;6(2):e23147. doi: 10.4161/cib.23147.

35.

Detoxification of α-tomatine by Cladosporium fulvum is required for full virulence on tomato.

Ökmen B, Etalo DW, Joosten MH, Bouwmeester HJ, de Vos RC, Collemare J, de Wit PJ.

New Phytol. 2013 Jun;198(4):1203-14. doi: 10.1111/nph.12208. Epub 2013 Mar 1.

36.

Fragmentation of an aflatoxin-like gene cluster in a forest pathogen.

Bradshaw RE, Slot JC, Moore GG, Chettri P, de Wit PJ, Ehrlich KC, Ganley AR, Olson MA, Rokas A, Carbone I, Cox MP.

New Phytol. 2013 Apr;198(2):525-35. doi: 10.1111/nph.12161. Epub 2013 Mar 1.

37.

RNA-Seq analysis reveals new gene models and alternative splicing in the fungal pathogen Fusarium graminearum.

Zhao C, Waalwijk C, de Wit PJ, Tang D, van der Lee T.

BMC Genomics. 2013 Jan 16;14:21. doi: 10.1186/1471-2164-14-21.

38.

Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.

Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV.

PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037. Epub 2012 Dec 6. Erratum in: PLoS Pathog. 2013 Mar 5;9(3):.

39.

Microbial toxins in the green world.

de Wit PJ.

FEMS Microbiol Rev. 2013 Jan;37(1):1-2. doi: 10.1111/1574-6976.12010. No abstract available.

40.

The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry.

de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE.

PLoS Genet. 2012;8(11):e1003088. doi: 10.1371/journal.pgen.1003088. Epub 2012 Nov 29. Erratum in: PLoS Genet. 2015 Dec;11(12):e1005775.

41.

Dothistromin genes at multiple separate loci are regulated by AflR.

Chettri P, Ehrlich KC, Cary JW, Collemare J, Cox MP, Griffiths SA, Olson MA, de Wit PJ, Bradshaw RE.

Fungal Genet Biol. 2013 Feb;51:12-20. doi: 10.1016/j.fgb.2012.11.006. Epub 2012 Dec 1.

PMID:
23207690
42.

Phytotoxic secondary metabolites and peptides produced by plant pathogenic Dothideomycete fungi.

Stergiopoulos I, Collemare J, Mehrabi R, De Wit PJ.

FEMS Microbiol Rev. 2013 Jan;37(1):67-93. doi: 10.1111/j.1574-6976.2012.00349.x. Epub 2012 Aug 29. Review.

43.

Dual disease resistance mediated by the immune receptor Cf-2 in tomato requires a common virulence target of a fungus and a nematode.

Lozano-Torres JL, Wilbers RH, Gawronski P, Boshoven JC, Finkers-Tomczak A, Cordewener JH, America AH, Overmars HA, Van 't Klooster JW, Baranowski L, Sobczak M, Ilyas M, van der Hoorn RA, Schots A, de Wit PJ, Bakker J, Goverse A, Smant G.

Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):10119-24. doi: 10.1073/pnas.1202867109. Epub 2012 Jun 6.

44.

Birth of new spliceosomal introns in fungi by multiplication of introner-like elements.

van der Burgt A, Severing E, de Wit PJ, Collemare J.

Curr Biol. 2012 Jul 10;22(13):1260-5. doi: 10.1016/j.cub.2012.05.011. Epub 2012 May 31.

45.

In silico characterization and molecular evolutionary analysis of a novel superfamily of fungal effector proteins.

Stergiopoulos I, Kourmpetis YA, Slot JC, Bakker FT, De Wit PJ, Rokas A.

Mol Biol Evol. 2012 Nov;29(11):3371-84. doi: 10.1093/molbev/mss143. Epub 2012 May 23.

PMID:
22628532
46.

Karyotyping methods for fungi.

Mehrabi R, Taga M, Aghaee M, de Wit PJ, Kema GH.

Methods Mol Biol. 2012;835:591-602. doi: 10.1007/978-1-61779-501-5_37.

PMID:
22183680
47.

MAP kinase phosphorylation and cAMP assessment in fungi.

Mehrabi R, M'barek SB, Saidi A, Abrinbana M, de Wit PJ, Kema GH.

Methods Mol Biol. 2012;835:571-83. doi: 10.1007/978-1-61779-501-5_35.

PMID:
22183678
48.

EBR1, a novel Zn(2)Cys(6) transcription factor, affects virulence and apical dominance of the hyphal tip in Fusarium graminearum.

Zhao C, Waalwijk C, de Wit PJ, van der Lee T, Tang D.

Mol Plant Microbe Interact. 2011 Dec;24(12):1407-18. doi: 10.1094/MPMI-06-11-0158.

49.

Detection of Mycosphaerella graminicola in wheat leaves by a microsatellite dinucleotide specific-primer.

Abd-Elsalam K, Bahkali AH, Moslem M, De Wit PJ, Verreet JA.

Int J Mol Sci. 2011 Jan 19;12(1):682-93. doi: 10.3390/ijms12010682.

50.

Horizontal gene and chromosome transfer in plant pathogenic fungi affecting host range.

Mehrabi R, Bahkali AH, Abd-Elsalam KA, Moslem M, Ben M'barek S, Gohari AM, Jashni MK, Stergiopoulos I, Kema GH, de Wit PJ.

FEMS Microbiol Rev. 2011 May;35(3):542-54. doi: 10.1111/j.1574-6976.2010.00263.x. Epub 2011 Jan 26. Review.

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