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Items: 1 to 50 of 714

1.

The Gut Microbiota in the First Decade of Life.

Derrien M, Alvarez AS, de Vos WM.

Trends Microbiol. 2019 Aug 29. pii: S0966-842X(19)30214-8. doi: 10.1016/j.tim.2019.08.001. [Epub ahead of print] Review.

2.

Surfactant specific ionic strength effects on membrane fouling during produced water treatment.

Dickhout JM, Virga E, Lammertink RGH, de Vos WM.

J Colloid Interface Sci. 2019 Aug 3;556:12-23. doi: 10.1016/j.jcis.2019.07.068. [Epub ahead of print]

3.

Development of omics-based protocols for the microbiological characterization of multi-strain formulations marketed as probiotics: the case of VSL#3.

Mora D, Filardi R, Arioli S, Boeren S, Aalvink S, de Vos WM.

Microb Biotechnol. 2019 Aug 12. doi: 10.1111/1751-7915.13476. [Epub ahead of print]

4.

Akkermansia muciniphila Exerts Lipid-Lowering and Immunomodulatory Effects without Affecting Neointima Formation in Hyperlipidemic APOE*3-Leiden.CETP Mice.

Katiraei S, de Vries MR, Costain AH, Thiem K, Hoving LR, van Diepen JA, Smits HH, Bouter KE, Rensen PCN, Quax PHA, Nieuwdorp M, Netea MG, de Vos WM, Cani PD, Belzer C, van Dijk KW, Berbée JFP, van Harmelen V.

Mol Nutr Food Res. 2019 Aug 6:e1900732. doi: 10.1002/mnfr.201900732. [Epub ahead of print]

PMID:
31389129
5.

Universal membrane-labeling combined with expression of Katushka far-red fluorescent protein enables non-invasive dynamic and longitudinal quantitative 3D dual-color fluorescent imaging of multiple bacterial strains in mouse intestine.

Peñate-Medina O, Tower RJ, Peñate-Medina T, Will O, Saris PEJ, Suojanen J, Sorsa T, Huuskonen L, Hiippala K, Satokari R, Glüer CC, de Vos WM, Reunanen J.

BMC Microbiol. 2019 Jul 18;19(1):167. doi: 10.1186/s12866-019-1538-z.

6.

Bicistronic Design-Based Continuous and High-Level Membrane Protein Production in Escherichia coli.

Claassens NJ, Finger-Bou M, Scholten B, Muis F, de Groot JJ, de Gier JW, de Vos WM, van der Oost J.

ACS Synth Biol. 2019 Jul 19;8(7):1685-1690. doi: 10.1021/acssynbio.9b00101. Epub 2019 Jul 2.

7.

Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study.

Depommier C, Everard A, Druart C, Plovier H, Van Hul M, Vieira-Silva S, Falony G, Raes J, Maiter D, Delzenne NM, de Barsy M, Loumaye A, Hermans MP, Thissen JP, de Vos WM, Cani PD.

Nat Med. 2019 Jul;25(7):1096-1103. doi: 10.1038/s41591-019-0495-2. Epub 2019 Jul 1.

PMID:
31263284
8.

Cohort profile: Finnish Health and Early Life Microbiota (HELMi) longitudinal birth cohort.

Korpela K, Dikareva E, Hanski E, Kolho KL, de Vos WM, Salonen A.

BMJ Open. 2019 Jun 27;9(6):e028500. doi: 10.1136/bmjopen-2018-028500.

9.

Anaerobic Degradation of N-ε-Carboxymethyllysine, a Major Glycation End-Product, by Human Intestinal Bacteria.

Bui TPN, Troise AD, Fogliano V, de Vos WM.

J Agric Food Chem. 2019 Jun 12;67(23):6594-6602. doi: 10.1021/acs.jafc.9b02208. Epub 2019 May 28.

10.

Enhanced nutrient supply and intestinal microbiota development in very low birth weight infants.

Blakstad EW, Korpela K, Lee S, Nakstad B, Moltu SJ, Strømmen K, Rønnestad AE, Brække K, Iversen PO, de Vos WM, Drevon CA.

Pediatr Res. 2019 Sep;86(3):323-332. doi: 10.1038/s41390-019-0412-x. Epub 2019 May 14.

PMID:
31086354
11.

Gender-Specific Associations Between Saliva Microbiota and Body Size.

Raju SC, Lagström S, Ellonen P, de Vos WM, Eriksson JG, Weiderpass E, Rounge TB.

Front Microbiol. 2019 Apr 10;10:767. doi: 10.3389/fmicb.2019.00767. eCollection 2019.

12.

The Effect of Allogenic Versus Autologous Fecal Microbiota Transfer on Symptoms, Visceral Perception and Fecal and Mucosal Microbiota in Irritable Bowel Syndrome: A Randomized Controlled Study.

Holster S, Lindqvist CM, Repsilber D, Salonen A, de Vos WM, König J, Brummer RJ.

Clin Transl Gastroenterol. 2019 Apr;10(4):e00034. doi: 10.14309/ctg.0000000000000034.

PMID:
31009405
13.

Reconstructing functional networks in the human intestinal tract using synthetic microbiomes.

Shetty SA, Smidt H, de Vos WM.

Curr Opin Biotechnol. 2019 Aug;58:146-154. doi: 10.1016/j.copbio.2019.03.009. Epub 2019 Apr 6. Review.

14.

Akkermansia muciniphila ameliorates the age-related decline in colonic mucus thickness and attenuates immune activation in accelerated aging Ercc1 -/Δ7 mice.

van der Lugt B, van Beek AA, Aalvink S, Meijer B, Sovran B, Vermeij WP, Brandt RMC, de Vos WM, Savelkoul HFJ, Steegenga WT, Belzer C.

Immun Ageing. 2019 Mar 8;16:6. doi: 10.1186/s12979-019-0145-z. eCollection 2019.

15.

Biotechnology of health-promoting bacteria.

Douillard FP, de Vos WM.

Biotechnol Adv. 2019 Nov 1;37(6):107369. doi: 10.1016/j.biotechadv.2019.03.008. Epub 2019 Mar 12. Review.

PMID:
30876799
16.

The Use of Defined Microbial Communities To Model Host-Microbe Interactions in the Human Gut.

Elzinga J, van der Oost J, de Vos WM, Smidt H.

Microbiol Mol Biol Rev. 2019 Mar 13;83(2). pii: e00054-18. doi: 10.1128/MMBR.00054-18. Print 2019 May 15. Review.

PMID:
30867232
17.

Metabolic improvement in obese patients after duodenal-jejunal exclusion is associated with intestinal microbiota composition changes.

de Jonge C, Fuentes S, Zoetendal EG, Bouvy ND, Nelissen R, Buurman WA, Greve JW, de Vos WM, Rensen SS.

Int J Obes (Lond). 2019 Feb 14. doi: 10.1038/s41366-019-0336-x. [Epub ahead of print]

PMID:
30765893
18.

Dynamics of the Gut Microbiota in Children Receiving Selective or Total Gut Decontamination Treatment during Hematopoietic Stem Cell Transplantation.

Bekker V, Zwittink RD, Knetsch CW, Sanders IMJG, Berghuis D, Heidt PJ, Vossen JMJJ, de Vos WM, Belzer C, Bredius RGM, Van't Hof PJ, Lankester AC, Kuijper EJ.

Biol Blood Marrow Transplant. 2019 Jun;25(6):1164-1171. doi: 10.1016/j.bbmt.2019.01.037. Epub 2019 Feb 5.

PMID:
30731251
19.

Intestinal epithelial N-acylphosphatidylethanolamine phospholipase D links dietary fat to metabolic adaptations in obesity and steatosis.

Everard A, Plovier H, Rastelli M, Van Hul M, de Wouters d'Oplinter A, Geurts L, Druart C, Robine S, Delzenne NM, Muccioli GG, de Vos WM, Luquet S, Flamand N, Di Marzo V, Cani PD.

Nat Commun. 2019 Jan 28;10(1):457. doi: 10.1038/s41467-018-08051-7.

20.

The Effect of Psyllium Husk on Intestinal Microbiota in Constipated Patients and Healthy Controls.

Jalanka J, Major G, Murray K, Singh G, Nowak A, Kurtz C, Silos-Santiago I, Johnston JM, de Vos WM, Spiller R.

Int J Mol Sci. 2019 Jan 20;20(2). pii: E433. doi: 10.3390/ijms20020433.

21.

Combined Experimental and Theoretical Study of Weak Polyelectrolyte Brushes in Salt Mixtures.

Willott JD, Humphreys BA, Webber GB, Wanless EJ, de Vos WM.

Langmuir. 2019 Feb 19;35(7):2709-2718. doi: 10.1021/acs.langmuir.8b03838. Epub 2019 Feb 7.

22.

Wettability of Amphoteric Surfaces: The Effect of pH and Ionic Strength on Surface Ionization and Wetting.

Virga E, Spruijt E, de Vos WM, Biesheuvel PM.

Langmuir. 2018 Dec 18;34(50):15174-15180. doi: 10.1021/acs.langmuir.8b02875. Epub 2018 Nov 28.

23.

Long-term impact of oral vancomycin, ciprofloxacin and metronidazole on the gut microbiota in healthy humans.

Haak BW, Lankelma JM, Hugenholtz F, Belzer C, de Vos WM, Wiersinga WJ.

J Antimicrob Chemother. 2019 Mar 1;74(3):782-786. doi: 10.1093/jac/dky471.

PMID:
30418539
24.

A Bifidobacterial pilus-associated protein promotes colonic epithelial proliferation.

O'Connell Motherway M, Houston A, O'Callaghan G, Reunanen J, O'Brien F, O'Driscoll T, Casey PG, de Vos WM, van Sinderen D, Shanahan F.

Mol Microbiol. 2019 Jan;111(1):287-301. doi: 10.1111/mmi.14155. Epub 2018 Dec 2.

PMID:
30352131
25.

Reclassification of Eubacterium hallii as Anaerobutyricum hallii gen. nov., comb. nov., and description of Anaerobutyricum soehngenii sp. nov., a butyrate and propionate-producing bacterium from infant faeces.

Shetty SA, Zuffa S, Bui TPN, Aalvink S, Smidt H, De Vos WM.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3741-3746. doi: 10.1099/ijsem.0.003041. Epub 2018 Oct 23.

PMID:
30351260
26.

Probiotic supplementation restores normal microbiota composition and function in antibiotic-treated and in caesarean-born infants.

Korpela K, Salonen A, Vepsäläinen O, Suomalainen M, Kolmeder C, Varjosalo M, Miettinen S, Kukkonen K, Savilahti E, Kuitunen M, de Vos WM.

Microbiome. 2018 Oct 16;6(1):182. doi: 10.1186/s40168-018-0567-4.

27.

Eubacterium maltosivorans sp. nov., a novel human intestinal acetogenic and butyrogenic bacterium with a versatile metabolism.

Feng Y, Stams AJM, Sánchez-Andrea I, de Vos WM.

Int J Syst Evol Microbiol. 2018 Oct 4. doi: 10.1099/ijsem.0.003028. [Epub ahead of print]

PMID:
30285910
28.

Romboutsia hominis sp. nov., the first human gut-derived representative of the genus Romboutsia, isolated from ileostoma effluent.

Gerritsen J, Umanets A, Staneva I, Hornung B, Ritari J, Paulin L, Rijkers GT, de Vos WM, Smidt H.

Int J Syst Evol Microbiol. 2018 Nov;68(11):3479-3486. doi: 10.1099/ijsem.0.003012. Epub 2018 Sep 18.

PMID:
30226461
29.

Bowel Biofilms: Tipping Points between a Healthy and Compromised Gut?

Tytgat HLP, Nobrega FL, van der Oost J, de Vos WM.

Trends Microbiol. 2019 Jan;27(1):17-25. doi: 10.1016/j.tim.2018.08.009. Epub 2018 Sep 12. Review.

PMID:
30219265
30.

Fucosylated oligosaccharides in mother's milk alleviate the effects of caesarean birth on infant gut microbiota.

Korpela K, Salonen A, Hickman B, Kunz C, Sprenger N, Kukkonen K, Savilahti E, Kuitunen M, de Vos WM.

Sci Rep. 2018 Sep 13;8(1):13757. doi: 10.1038/s41598-018-32037-6.

31.

Enhanced selectivity and performance of heterogeneous cation exchange membranes through addition of sulfonated and protonated Montmorillonite.

Radmanesh F, Rijnaarts T, Moheb A, Sadeghi M, de Vos WM.

J Colloid Interface Sci. 2019 Jan 1;533:658-670. doi: 10.1016/j.jcis.2018.08.100. Epub 2018 Aug 29.

PMID:
30195114
32.

Correction: Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.

Douillard FP, Mora D, Eijlander RT, Wels M, de Vos WM; PLOS ONE Editors.

PLoS One. 2018 Aug 30;13(8):e0203548. doi: 10.1371/journal.pone.0203548. eCollection 2018.

33.

Early life colonization of the human gut: microbes matter everywhere.

Korpela K, de Vos WM.

Curr Opin Microbiol. 2018 Aug;44:70-78. doi: 10.1016/j.mib.2018.06.003. Epub 2018 Aug 4. Review.

PMID:
30086431
34.

A low FODMAP diet is associated with changes in the microbiota and reduction in breath hydrogen but not colonic volume in healthy subjects.

Sloan TJ, Jalanka J, Major GAD, Krishnasamy S, Pritchard S, Abdelrazig S, Korpela K, Singh G, Mulvenna C, Hoad CL, Marciani L, Barrett DA, Lomer MCE, de Vos WM, Gowland PA, Spiller RC.

PLoS One. 2018 Jul 26;13(7):e0201410. doi: 10.1371/journal.pone.0201410. eCollection 2018.

35.

Flux, Impact, and Fate of Halogenated Xenobiotic Compounds in the Gut.

Atashgahi S, Shetty SA, Smidt H, de Vos WM.

Front Physiol. 2018 Jul 10;9:888. doi: 10.3389/fphys.2018.00888. eCollection 2018. Review.

36.

Akkermansia muciniphila in the Human Gastrointestinal Tract: When, Where, and How?

Geerlings SY, Kostopoulos I, de Vos WM, Belzer C.

Microorganisms. 2018 Jul 23;6(3). pii: E75. doi: 10.3390/microorganisms6030075. Review.

37.

Adhesion of emulsified oil droplets to hydrophilic and hydrophobic surfaces - effect of surfactant charge, surfactant concentration and ionic strength.

Dickhout JM, Kleijn JM, Lammertink RGH, de Vos WM.

Soft Matter. 2018 Jul 4;14(26):5452-5460. doi: 10.1039/c8sm00476e.

PMID:
29911238
38.

Divalent Cation Removal by Donnan Dialysis for Improved Reverse Electrodialysis.

Rijnaarts T, Shenkute NT, Wood JA, de Vos WM, Nijmeijer K.

ACS Sustain Chem Eng. 2018 May 7;6(5):7035-7041. doi: 10.1021/acssuschemeng.8b00879. Epub 2018 Apr 5.

39.

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia.

Olde Loohuis LM, Mangul S, Ori APS, Jospin G, Koslicki D, Yang HT, Wu T, Boks MP, Lomen-Hoerth C, Wiedau-Pazos M, Cantor RM, de Vos WM, Kahn RS, Eskin E, Ophoff RA.

Transl Psychiatry. 2018 May 10;8(1):96. doi: 10.1038/s41398-018-0107-9.

40.

Effect of Vegan Fecal Microbiota Transplantation on Carnitine- and Choline-Derived Trimethylamine-N-Oxide Production and Vascular Inflammation in Patients With Metabolic Syndrome.

Smits LP, Kootte RS, Levin E, Prodan A, Fuentes S, Zoetendal EG, Wang Z, Levison BS, Cleophas MCP, Kemper EM, Dallinga-Thie GM, Groen AK, Joosten LAB, Netea MG, Stroes ESG, de Vos WM, Hazen SL, Nieuwdorp M.

J Am Heart Assoc. 2018 Mar 26;7(7). pii: e008342. doi: 10.1161/JAHA.117.008342.

41.

Action and function of Akkermansia muciniphila in microbiome ecology, health and disease.

Ottman N, Geerlings SY, Aalvink S, de Vos WM, Belzer C.

Best Pract Res Clin Gastroenterol. 2017 Dec;31(6):637-642. doi: 10.1016/j.bpg.2017.10.001. Epub 2017 Oct 13. Review.

PMID:
29566906
42.

Fecal microbiota transplantation against intestinal colonization by extended spectrum beta-lactamase producing Enterobacteriaceae: a proof of principle study.

Singh R, de Groot PF, Geerlings SE, Hodiamont CJ, Belzer C, Berge IJMT, de Vos WM, Bemelman FJ, Nieuwdorp M.

BMC Res Notes. 2018 Mar 22;11(1):190. doi: 10.1186/s13104-018-3293-x.

43.

Reproducibility and repeatability of six high-throughput 16S rDNA sequencing protocols for microbiota profiling.

Raju SC, Lagström S, Ellonen P, de Vos WM, Eriksson JG, Weiderpass E, Rounge TB.

J Microbiol Methods. 2018 Apr;147:76-86. doi: 10.1016/j.mimet.2018.03.003. Epub 2018 Mar 18.

44.

Behavior of Weak Polyelectrolyte Brushes in Mixed Salt Solutions.

Willott JD, Murdoch TJ, Leermakers FAM, de Vos WM.

Macromolecules. 2018 Feb 13;51(3):1198-1206. doi: 10.1021/acs.macromol.7b02244. Epub 2018 Jan 17.

45.

Deciphering the trophic interaction between Akkermansia muciniphila and the butyrogenic gut commensal Anaerostipes caccae using a metatranscriptomic approach.

Chia LW, Hornung BVH, Aalvink S, Schaap PJ, de Vos WM, Knol J, Belzer C.

Antonie Van Leeuwenhoek. 2018 Jun;111(6):859-873. doi: 10.1007/s10482-018-1040-x. Epub 2018 Feb 19.

46.

Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.

Douillard FP, Mora D, Eijlander RT, Wels M, de Vos WM.

PLoS One. 2018 Feb 16;13(2):e0192452. doi: 10.1371/journal.pone.0192452. eCollection 2018. Erratum in: PLoS One. 2018 Aug 30;13(8):e0203548.

47.

Publisher Correction: Enterotypes in the landscape of gut microbial community composition.

Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P.

Nat Microbiol. 2018 Mar;3(3):388. doi: 10.1038/s41564-018-0114-x.

PMID:
29440750
48.

Organic acid production from potato starch waste fermentation by rumen microbial communities from Dutch and Thai dairy cows.

Palakawong Na Ayudthaya S, van de Weijer AHP, van Gelder AH, Stams AJM, de Vos WM, Plugge CM.

Biotechnol Biofuels. 2018 Jan 25;11:13. doi: 10.1186/s13068-018-1012-4. eCollection 2018.

49.

Model-driven design of a minimal medium for Akkermansia muciniphila confirms mucus adaptation.

van der Ark KCH, Aalvink S, Suarez-Diez M, Schaap PJ, de Vos WM, Belzer C.

Microb Biotechnol. 2018 May;11(3):476-485. doi: 10.1111/1751-7915.13033. Epub 2018 Jan 26.

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