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Items: 1 to 50 of 96

1.

Feeling the Heat: Searching for Plant Thermosensors.

Vu LD, Gevaert K, De Smet I.

Trends Plant Sci. 2018 Dec 17. pii: S1360-1385(18)30266-8. doi: 10.1016/j.tplants.2018.11.004. [Epub ahead of print] Review.

PMID:
30573309
2.

Look Closely, the Beautiful May Be Small: Precursor-Derived Peptides in Plants.

Olsson V, Joos L, Zhu S, Gevaert K, Butenko MA, De Smet I.

Annu Rev Plant Biol. 2018 Dec 10. doi: 10.1146/annurev-arplant-042817-040413. [Epub ahead of print]

PMID:
30525926
3.

The Strawberry Tales: Size Matters.

Vergauwen D, De Smet I.

Trends Plant Sci. 2019 Jan;24(1):1-3. doi: 10.1016/j.tplants.2018.10.007. Epub 2018 Nov 5.

PMID:
30409686
4.

Peanut Stunt Virus and Its Satellite RNA Trigger Changes in Phosphorylation in N. benthamiana Infected Plants at the Early Stage of the Infection.

Wrzesińska B, Dai Vu L, Gevaert K, De Smet I, Obrępalska-Stęplowska A.

Int J Mol Sci. 2018 Oct 18;19(10). pii: E3223. doi: 10.3390/ijms19103223.

5.

Protein Language: Post-Translational Modifications Talking to Each Other.

Vu LD, Gevaert K, De Smet I.

Trends Plant Sci. 2018 Dec;23(12):1068-1080. doi: 10.1016/j.tplants.2018.09.004. Epub 2018 Sep 29. Review.

PMID:
30279071
6.

The Xerobranching Response Represses Lateral Root Formation When Roots Are Not in Contact with Water.

Orman-Ligeza B, Morris EC, Parizot B, Lavigne T, Babé A, Ligeza A, Klein S, Sturrock C, Xuan W, Novák O, Ljung K, Fernandez MA, Rodriguez PL, Dodd IC, De Smet I, Chaumont F, Batoko H, Périlleux C, Lynch JP, Bennett MJ, Beeckman T, Draye X.

Curr Biol. 2018 Oct 8;28(19):3165-3173.e5. doi: 10.1016/j.cub.2018.07.074. Epub 2018 Sep 27.

PMID:
30270188
7.

Receptor Kinase THESEUS1 Is a Rapid Alkalinization Factor 34 Receptor in Arabidopsis.

Gonneau M, Desprez T, Martin M, Doblas VG, Bacete L, Miart F, Sormani R, Hématy K, Renou J, Landrein B, Murphy E, Van De Cotte B, Vernhettes S, De Smet I, Höfte H.

Curr Biol. 2018 Aug 6;28(15):2452-2458.e4. doi: 10.1016/j.cub.2018.05.075. Epub 2018 Jul 26.

PMID:
30057301
8.

Early mannitol-triggered changes in the Arabidopsis leaf (phospho)proteome reveal growth regulators.

Nikonorova N, Van den Broeck L, Zhu S, van de Cotte B, Dubois M, Gevaert K, Inzé D, De Smet I.

J Exp Bot. 2018 Aug 31;69(19):4591-4607. doi: 10.1093/jxb/ery261.

9.

Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated interconversion of phosphoforms.

Vu LD, Zhu T, Verstraeten I, van de Cotte B; International Wheat Genome Sequencing Consortium, Gevaert K, De Smet I.

J Exp Bot. 2018 Aug 31;69(19):4609-4624. doi: 10.1093/jxb/ery204.

10.

Arabidopsis research requires a critical re-evaluation of genetic tools.

Nikonorova N, Yue K, Beeckman T, De Smet I.

J Exp Bot. 2018 Jun 27;69(15):3541-3544. doi: 10.1093/jxb/ery161.

PMID:
29701839
11.

Proteome Analysis of Arabidopsis Roots.

Nikonorova N, Vu LD, Stes E, Gevaert K, De Smet I.

Methods Mol Biol. 2018;1761:263-274. doi: 10.1007/978-1-4939-7747-5_20.

PMID:
29525964
12.

The Auxin-Regulated CrRLK1L Kinase ERULUS Controls Cell Wall Composition during Root Hair Tip Growth.

Schoenaers S, Balcerowicz D, Breen G, Hill K, Zdanio M, Mouille G, Holman TJ, Oh J, Wilson MH, Nikonorova N, Vu LD, De Smet I, Swarup R, De Vos WH, Pintelon I, Adriaensen D, Grierson C, Bennett MJ, Vissenberg K.

Curr Biol. 2018 Mar 5;28(5):722-732.e6. doi: 10.1016/j.cub.2018.01.050. Epub 2018 Feb 22.

PMID:
29478854
13.

From early farmers to Norman Borlaug - the making of modern wheat.

Vergauwen D, De Smet I.

Curr Biol. 2017 Sep 11;27(17):R858-R862. doi: 10.1016/j.cub.2017.06.061.

14.

Synergistic action of auxin and cytokinin mediates aluminum-induced root growth inhibition in Arabidopsis.

Yang ZB, Liu G, Liu J, Zhang B, Meng W, Müller B, Hayashi KI, Zhang X, Zhao Z, De Smet I, Ding Z.

EMBO Rep. 2017 Jul;18(7):1213-1230. doi: 10.15252/embr.201643806. Epub 2017 Jun 9.

15.

Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.

Ueda M, Aichinger E, Gong W, Groot E, Verstraeten I, Vu LD, De Smet I, Higashiyama T, Umeda M, Laux T.

Genes Dev. 2017 Mar 15;31(6):617-627. doi: 10.1101/gad.292409.116.

16.

Proteome Profiling of Wheat Shoots from Different Cultivars.

Vu LD, Verstraeten I, Stes E, Van Bel M, Coppens F, Gevaert K, De Smet I.

Front Plant Sci. 2017 Mar 13;8:332. doi: 10.3389/fpls.2017.00332. eCollection 2017.

17.

Tips and Tricks for Exogenous Application of Synthetic Post-translationally Modified Peptides to Plants.

Czyzewicz N, Stes E, De Smet I.

Methods Mol Biol. 2017;1497:19-28.

PMID:
27864754
18.

Down the Rabbit Hole-Carrots, Genetics and Art.

Vergauwen D, De Smet I.

Trends Plant Sci. 2016 Nov;21(11):895-898. doi: 10.1016/j.tplants.2016.08.013. Epub 2016 Sep 27. Review.

PMID:
27686261
19.

Fine-Tuning Development Through Antagonistic Peptides: An Emerging Theme.

Lee JS, De Smet I.

Trends Plant Sci. 2016 Dec;21(12):991-993. doi: 10.1016/j.tplants.2016.10.003. Epub 2016 Oct 18. Review.

PMID:
27769751
20.

Up-to-Date Workflow for Plant (Phospho)proteomics Identifies Differential Drought-Responsive Phosphorylation Events in Maize Leaves.

Vu LD, Stes E, Van Bel M, Nelissen H, Maddelein D, Inzé D, Coppens F, Martens L, Gevaert K, De Smet I.

J Proteome Res. 2016 Dec 2;15(12):4304-4317. Epub 2016 Oct 4.

PMID:
27643528
21.

RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.

Murphy E, Vu LD, Van den Broeck L, Lin Z, Ramakrishna P, van de Cotte B, Gaudinier A, Goh T, Slane D, Beeckman T, Inzé D, Brady SM, Fukaki H, De Smet I.

J Exp Bot. 2016 Aug;67(16):4863-75. doi: 10.1093/jxb/erw281. Epub 2016 Jul 18.

22.

Plant peptides - taking them to the next level.

De Coninck B, De Smet I.

J Exp Bot. 2016 Aug;67(16):4791-5. doi: 10.1093/jxb/erw309. No abstract available.

23.

CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis.

Roberts I, Smith S, Stes E, De Rybel B, Staes A, van de Cotte B, Njo MF, Dedeyne L, Demol H, Lavenus J, Audenaert D, Gevaert K, Beeckman T, De Smet I.

J Exp Bot. 2016 Aug;67(16):4889-99. doi: 10.1093/jxb/erw231. Epub 2016 Jun 13.

24.

The growing story of (ARABIDOPSIS) CRINKLY 4.

Czyzewicz N, Nikonorova N, Meyer MR, Sandal P, Shah S, Vu LD, Gevaert K, Rao AG, De Smet I.

J Exp Bot. 2016 Aug;67(16):4835-47. doi: 10.1093/jxb/erw192. Epub 2016 May 21. Review.

PMID:
27208540
25.

PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root.

Yue K, Sandal P, Williams EL, Murphy E, Stes E, Nikonorova N, Ramakrishna P, Czyzewicz N, Montero-Morales L, Kumpf R, Lin Z, van de Cotte B, Iqbal M, Van Bel M, Van De Slijke E, Meyer MR, Gadeyne A, Zipfel C, De Jaeger G, Van Montagu M, Van Damme D, Gevaert K, Rao AG, Beeckman T, De Smet I.

Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):1447-52. doi: 10.1073/pnas.1525122113. Epub 2016 Jan 20.

26.

It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana.

Walton A, Stes E, Cybulski N, Van Bel M, Iñigo S, Durand AN, Timmerman E, Heyman J, Pauwels L, De Veylder L, Goossens A, De Smet I, Coppens F, Goormachtig S, Gevaert K.

Plant Cell. 2016 Jan;28(1):6-16. doi: 10.1105/tpc.15.00878. Epub 2016 Jan 7. Review.

27.
28.

A phylogenetic approach to study the origin and evolution of the CRINKLY4 family.

Nikonorova N, Vu LD, Czyzewicz N, Gevaert K, De Smet I.

Front Plant Sci. 2015 Oct 23;6:880. doi: 10.3389/fpls.2015.00880. eCollection 2015.

29.

The Plant Peptidome: An Expanding Repertoire of Structural Features and Biological Functions.

Tavormina P, De Coninck B, Nikonorova N, De Smet I, Cammue BP.

Plant Cell. 2015 Aug;27(8):2095-118. doi: 10.1105/tpc.15.00440. Epub 2015 Aug 14. Review.

30.

Modulation of Arabidopsis and monocot root architecture by CLAVATA3/EMBRYO SURROUNDING REGION 26 peptide.

Czyzewicz N, Shi CL, Vu LD, Van De Cotte B, Hodgman C, Butenko MA, De Smet I.

J Exp Bot. 2015 Aug;66(17):5229-43. doi: 10.1093/jxb/erv360. Epub 2015 Jul 17.

31.

Antagonistic peptide technology for functional dissection of CLE peptides revisited.

Czyzewicz N, Wildhagen M, Cattaneo P, Stahl Y, Pinto KG, Aalen RB, Butenko MA, Simon R, Hardtke CS, De Smet I.

J Exp Bot. 2015 Aug;66(17):5367-74. doi: 10.1093/jxb/erv284. Epub 2015 Jun 30.

32.

Phosphoproteomics-based peptide ligand-receptor kinase pairing. Commentary on: "A peptide hormone and its receptor protein kinase regulate plant cell expansion".

Stes E, Gevaert K, De Smet I.

Front Plant Sci. 2015 Apr 9;6:224. doi: 10.3389/fpls.2015.00224. eCollection 2015. No abstract available.

33.

Designer crops: optimal root system architecture for nutrient acquisition.

Kong X, Zhang M, De Smet I, Ding Z.

Trends Biotechnol. 2014 Dec;32(12):597-8. doi: 10.1016/j.tibtech.2014.09.008. Epub 2014 Nov 4.

PMID:
25450041
34.

Cell type-specific transcriptome analysis in the early Arabidopsis thaliana embryo.

Slane D, Kong J, Berendzen KW, Kilian J, Henschen A, Kolb M, Schmid M, Harter K, Mayer U, De Smet I, Bayer M, Jürgens G.

Development. 2014 Dec;141(24):4831-40. doi: 10.1242/dev.116459. Epub 2014 Nov 19.

35.

Plant hormone signalling through the eye of the mass spectrometer.

Walton A, Stes E, De Smet I, Goormachtig S, Gevaert K.

Proteomics. 2015 Mar;15(5-6):1113-26. doi: 10.1002/pmic.201400403. Epub 2015 Jan 19. Review.

PMID:
25404421
36.

Understanding the RALF family: a tale of many species.

Murphy E, De Smet I.

Trends Plant Sci. 2014 Oct;19(10):664-71. doi: 10.1016/j.tplants.2014.06.005. Epub 2014 Jul 3. Review.

PMID:
24999241
37.

Pericycle.

Beeckman T, De Smet I.

Curr Biol. 2014 May 19;24(10):R378-9. doi: 10.1016/j.cub.2014.03.031. No abstract available.

38.

Omics and modelling approaches for understanding regulation of asymmetric cell divisions in arabidopsis and other angiosperm plants.

Kajala K, Ramakrishna P, Fisher A, Bergmann DC, De Smet I, Sozzani R, Weijers D, Brady SM.

Ann Bot. 2014 Jun;113(7):1083-1105. Review.

39.

A COFRADIC protocol to study protein ubiquitination.

Stes E, Laga M, Walton A, Samyn N, Timmerman E, De Smet I, Goormachtig S, Gevaert K.

J Proteome Res. 2014 Jun 6;13(6):3107-13. doi: 10.1021/pr4012443. Epub 2014 May 20.

PMID:
24816145
40.

Shaping a root system: regulating lateral versus primary root growth.

Tian H, De Smet I, Ding Z.

Trends Plant Sci. 2014 Jul;19(7):426-31. doi: 10.1016/j.tplants.2014.01.007. Epub 2014 Feb 8.

PMID:
24513255
41.

Synthetic molecules: helping to unravel plant signal transduction.

Xuan W, Murphy E, Beeckman T, Audenaert D, De Smet I.

J Chem Biol. 2013 Mar 3;6(2):43-50. doi: 10.1007/s12154-013-0091-8. eCollection 2013 Mar 3. Review.

42.

A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate auxin response during lateral root development.

Cho H, Ryu H, Rho S, Hill K, Smith S, Audenaert D, Park J, Han S, Beeckman T, Bennett MJ, Hwang D, De Smet I, Hwang I.

Nat Cell Biol. 2014 Jan;16(1):66-76. doi: 10.1038/ncb2893. Epub 2013 Dec 22.

PMID:
24362628
43.

The CEP family in land plants: evolutionary analyses, expression studies, and role in Arabidopsis shoot development.

Roberts I, Smith S, De Rybel B, Van Den Broeke J, Smet W, De Cokere S, Mispelaere M, De Smet I, Beeckman T.

J Exp Bot. 2013 Dec;64(17):5371-81. doi: 10.1093/jxb/ert331. Epub 2013 Oct 31.

PMID:
24179095
44.

Tightly controlled WRKY23 expression mediates Arabidopsis embryo development.

Grunewald W, De Smet I, De Rybel B, Robert HS, van de Cotte B, Willemsen V, Gheysen G, Weijers D, Friml J, Beeckman T.

EMBO Rep. 2013 Dec;14(12):1136-42. doi: 10.1038/embor.2013.169. Epub 2013 Oct 25.

45.

Sequential induction of auxin efflux and influx carriers regulates lateral root emergence.

Péret B, Middleton AM, French AP, Larrieu A, Bishopp A, Njo M, Wells DM, Porco S, Mellor N, Band LR, Casimiro I, Kleine-Vehn J, Vanneste S, Sairanen I, Mallet R, Sandberg G, Ljung K, Beeckman T, Benkova E, Friml J, Kramer E, King JR, De Smet I, Pridmore T, Owen M, Bennett MJ.

Mol Syst Biol. 2013 Oct 22;9:699. doi: 10.1038/msb.2013.43.

46.

Localised ABA signalling mediates root growth plasticity.

Ding Z, De Smet I.

Trends Plant Sci. 2013 Oct;18(10):533-5. doi: 10.1016/j.tplants.2013.08.009. Epub 2013 Sep 11.

47.

Message in a bottle: small signalling peptide outputs during growth and development.

Czyzewicz N, Yue K, Beeckman T, De Smet I.

J Exp Bot. 2013 Dec;64(17):5281-96. doi: 10.1093/jxb/ert283. Epub 2013 Sep 7. Review.

PMID:
24014870
48.

Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana.

Muraro D, Voβ U, Wilson M, Bennett M, Byrne H, De Smet I, Hodgman C, King J.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Jan-Feb;10(1):50-60. doi: 10.1109/TCBB.2013.3.

PMID:
23702543
49.

Lateral root development in Arabidopsis: fifty shades of auxin.

Lavenus J, Goh T, Roberts I, Guyomarc'h S, Lucas M, De Smet I, Fukaki H, Beeckman T, Bennett M, Laplaze L.

Trends Plant Sci. 2013 Aug;18(8):450-8. doi: 10.1016/j.tplants.2013.04.006. Epub 2013 May 20. Review.

PMID:
23701908
50.

Transcriptional repression of BODENLOS by HD-ZIP transcription factor HB5 in Arabidopsis thaliana.

De Smet I, Lau S, Ehrismann JS, Axiotis I, Kolb M, Kientz M, Weijers D, Jürgens G.

J Exp Bot. 2013 Jul;64(10):3009-19. doi: 10.1093/jxb/ert137. Epub 2013 May 16.

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