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Items: 25

1.

Agroinoculation of Grapevine Pinot Gris Virus in tobacco and grapevine provides insights on viral pathogenesis.

Tarquini G, Zaina G, Ermacora P, De Amicis F, Franco-Orozco B, Loi N, Martini M, Bianchi GL, Pagliari L, Firrao G, de Paoli E, Musetti R.

PLoS One. 2019 Mar 19;14(3):e0214010. doi: 10.1371/journal.pone.0214010. eCollection 2019.

2.

A double-hit High-grade B-cell lymphoma with three-way translocation t(3;8;14)(q27;q24;q32) involving BCL6, MYC, and IGH.

De Paoli E, Bandiera L, Ravano E, Cesana C, Grillo G, Mancini V, De Canal G, Bonoldi E, Soriani S.

Clin Case Rep. 2018 Oct 26;6(12):2411-2415. doi: 10.1002/ccr3.1871. eCollection 2018 Dec.

3.

Grapevine field experiments reveal the contribution of genotype, the influence of environment and the effect of their interaction (G×E) on the berry transcriptome.

Dal Santo S, Zenoni S, Sandri M, De Lorenzis G, Magris G, De Paoli E, Di Gaspero G, Del Fabbro C, Morgante M, Brancadoro L, Grossi D, Fasoli M, Zuccolotto P, Tornielli GB, Pezzotti M.

Plant J. 2018 Mar;93(6):1143-1159. doi: 10.1111/tpj.13834. Epub 2018 Mar 5.

4.

Novel recurrent chromosome anomalies in Shwachman-Diamond syndrome.

Valli R, De Paoli E, Nacci L, Frattini A, Pasquali F, Maserati E.

Pediatr Blood Cancer. 2017 Aug;64(8). doi: 10.1002/pbc.26454. Epub 2017 Jan 28.

PMID:
28130858
5.

New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array.

Faivre-Rampant P, Zaina G, Jorge V, Giacomello S, Segura V, Scalabrin S, Guérin V, De Paoli E, Aluome C, Viger M, Cattonaro F, Payne A, PaulStephenRaj P, Le Paslier MC, Berard A, Allwright MR, Villar M, Taylor G, Bastien C, Morgante M.

Mol Ecol Resour. 2016 Jul;16(4):1023-36. doi: 10.1111/1755-0998.12513. Epub 2016 Mar 24.

PMID:
26929265
6.

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

Olsen JL, Rouzé P, Verhelst B, Lin YC, Bayer T, Collen J, Dattolo E, De Paoli E, Dittami S, Maumus F, Michel G, Kersting A, Lauritano C, Lohaus R, Töpel M, Tonon T, Vanneste K, Amirebrahimi M, Brakel J, Boström C, Chovatia M, Grimwood J, Jenkins JW, Jueterbock A, Mraz A, Stam WT, Tice H, Bornberg-Bauer E, Green PJ, Pearson GA, Procaccini G, Duarte CM, Schmutz J, Reusch TB, Van de Peer Y.

Nature. 2016 Feb 18;530(7590):331-5. doi: 10.1038/nature16548. Epub 2016 Jan 27.

PMID:
26814964
7.

High variability of genomic instability and gene expression profiling in different HeLa clones.

Frattini A, Fabbri M, Valli R, De Paoli E, Montalbano G, Gribaldo L, Pasquali F, Maserati E.

Sci Rep. 2015 Oct 20;5:15377. doi: 10.1038/srep15377.

8.

The Ty1-copia LTR retroelement family PARTC is highly conserved in conifers over 200 MY of evolution.

Zuccolo A, Scofield DG, De Paoli E, Morgante M.

Gene. 2015 Aug 15;568(1):89-99. doi: 10.1016/j.gene.2015.05.028. Epub 2015 May 14.

PMID:
25982862
9.

Alternate clonal dominance in richter transformation presenting as extranodal diffuse large B-cell lymphoma and synchronous classic Hodgkin lymphoma.

Di Bernardo A, Mussetti A, Aiello A, De Paoli E, Cabras AD.

Am J Clin Pathol. 2014 Aug;142(2):227-32. doi: 10.1309/AJCP4T9RPXYTXQDE.

PMID:
25015865
10.

Ewing sarcoma of the small bowel: a study of seven cases, including one with the uncommonly reported EWSR1-FEV translocation.

Milione M, Gasparini P, Sozzi G, Mazzaferro V, Ferrari A, Casali PG, Perrone F, Tamborini E, Pellegrinelli A, Gherardi G, Arrigoni G, Collini P, Testi A, De Paoli E, Aiello A, Pilotti S, Pelosi G.

Histopathology. 2014 Jun;64(7):1014-26. doi: 10.1111/his.12350. Epub 2014 Feb 25.

PMID:
24898918
11.

Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs.

Chávez Montes RA, de Fátima Rosas-Cárdenas F, De Paoli E, Accerbi M, Rymarquis LA, Mahalingam G, Marsch-Martínez N, Meyers BC, Green PJ, de Folter S.

Nat Commun. 2014 Apr 23;5:3722. doi: 10.1038/ncomms4722.

PMID:
24759728
12.

Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.

Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ.

Plant Cell. 2011 Dec;23(12):4185-207. doi: 10.1105/tpc.111.089045. Epub 2011 Dec 9.

13.

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, González AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC.

Genes Dev. 2011 Dec 1;25(23):2540-53. doi: 10.1101/gad.177527.111.

14.

Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses.

Swaminathan K, Alabady MS, Varala K, De Paoli E, Ho I, Rokhsar DS, Arumuganathan AK, Ming R, Green PJ, Meyers BC, Moose SP, Hudson ME.

Genome Biol. 2010;11(2):R12. doi: 10.1186/gb-2010-11-2-r12. Epub 2010 Feb 3.

15.

Detailed analysis of a contiguous 22-Mb region of the maize genome.

Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, Nagel DH, Collura K, Kudrna D, Currie J, Lin J, Kim H, Angelova A, Scara G, Wissotski M, Golser W, Courtney L, Kruchowski S, Graves TA, Rock SM, Adams S, Fulton LA, Fronick C, Courtney W, Kramer M, Spiegel L, Nascimento L, Kalyanaraman A, Chaparro C, Deragon JM, Miguel PS, Jiang N, Wessler SR, Green PJ, Yu Y, Schwartz DC, Meyers BC, Bennetzen JL, Martienssen RA, McCombie WR, Aluru S, Clifton SW, Schnable PS, Ware D, Wilson RK, Wing RA.

PLoS Genet. 2009 Nov;5(11):e1000728. doi: 10.1371/journal.pgen.1000728. Epub 2009 Nov 20.

16.

Methods for isolation of total RNA to recover miRNAs and other small RNAs from diverse species.

Accerbi M, Schmidt SA, De Paoli E, Park S, Jeong DH, Green PJ.

Methods Mol Biol. 2010;592:31-50. doi: 10.1007/978-1-60327-005-2_3.

PMID:
19802587
17.

Distinct extremely abundant siRNAs associated with cosuppression in petunia.

De Paoli E, Dorantes-Acosta A, Zhai J, Accerbi M, Jeong DH, Park S, Meyers BC, Jorgensen RA, Green PJ.

RNA. 2009 Nov;15(11):1965-70. doi: 10.1261/rna.1706109. Epub 2009 Sep 23.

18.

The isochromosome i(7)(q10) carrying c.258+2t>c mutation of the SBDS gene does not promote development of myeloid malignancies in patients with Shwachman syndrome.

Minelli A, Maserati E, Nicolis E, Zecca M, Sainati L, Longoni D, Lo Curto F, Menna G, Poli F, De Paoli E, Cipolli M, Locatelli F, Pasquali F, Danesino C.

Leukemia. 2009 Apr;23(4):708-11. doi: 10.1038/leu.2008.369. Epub 2009 Jan 15.

PMID:
19148133
19.

Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant.

Nobuta K, Lu C, Shrivastava R, Pillay M, De Paoli E, Accerbi M, Arteaga-Vazquez M, Sidorenko L, Jeong DH, Yen Y, Green PJ, Chandler VL, Meyers BC.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14958-63. doi: 10.1073/pnas.0808066105. Epub 2008 Sep 24.

20.

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends.

German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ.

Nat Biotechnol. 2008 Aug;26(8):941-6. doi: 10.1038/nbt1417. Epub 2008 Jun 9.

PMID:
18542052
21.

Transposable elements and the plant pan-genomes.

Morgante M, De Paoli E, Radovic S.

Curr Opin Plant Biol. 2007 Apr;10(2):149-55. Epub 2007 Feb 14. Review.

PMID:
17300983
22.

Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst].

Heuertz M, De Paoli E, Källman T, Larsson H, Jurman I, Morgante M, Lascoux M, Gyllenstrand N.

Genetics. 2006 Dec;174(4):2095-105. Epub 2006 Oct 22.

23.

Role of radio-guided surgery in recurrent secondary hyperparathyroidism.

Navarra G, Feggi L, Ascanelli S, Turini A, Carcoforo P, De Paoli E, Pozza E.

Nephron. 2001 May;88(1):36-8.

PMID:
11340348
24.

[Hepatitis B virus and periodic hemodialysis. Evaluation of experience of more than 9 years].

Farinelli A, Stabellini N, Soffritti S, Baldi R, Bedani PG, De Paoli E, Fiocchi O, Gilli P, Mari C, Squerzanti R, Tataranni G.

Recenti Prog Med. 1981 Dec;71(6):665-80. Italian. No abstract available.

PMID:
7339749
25.

[Umbilical cord artery: experimental study of a new vascular prosthesis].

Bresadola F, Pozza E, Ricci D, De Paoli E, Squarzanti R, Mannella P, Pasqualini C, Guerrera C, Menghi R.

Chir Patol Sper. 1979 Jun;27(3):229-41. Italian. No abstract available.

PMID:
261939

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