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Items: 11

1.

Hox genes: Downstream "effectors" of retinoic acid signaling in vertebrate embryogenesis.

Nolte C, De Kumar B, Krumlauf R.

Genesis. 2019 Jul;57(7-8):e23306. doi: 10.1002/dvg.23306. Epub 2019 May 21. Review.

PMID:
31111645
2.

A Hox-TALE regulatory circuit for neural crest patterning is conserved across vertebrates.

Parker HJ, De Kumar B, Green SA, Prummel KD, Hess C, Kaufman CK, Mosimann C, Wiedemann LM, Bronner ME, Krumlauf R.

Nat Commun. 2019 Mar 13;10(1):1189. doi: 10.1038/s41467-019-09197-8.

3.

Retinoid-Sensitive Epigenetic Regulation of the Hoxb Cluster Maintains Normal Hematopoiesis and Inhibits Leukemogenesis.

Qian P, De Kumar B, He XC, Nolte C, Gogol M, Ahn Y, Chen S, Li Z, Xu H, Perry JM, Hu D, Tao F, Zhao M, Han Y, Hall K, Peak A, Paulson A, Zhao C, Venkatraman A, Box A, Perera A, Haug JS, Parmely T, Li H, Krumlauf R, Li L.

Cell Stem Cell. 2018 May 3;22(5):740-754.e7. doi: 10.1016/j.stem.2018.04.012.

4.

Hoxa1 targets signaling pathways during neural differentiation of ES cells and mouse embryogenesis.

De Kumar B, Parker HJ, Paulson A, Parrish ME, Zeitlinger J, Krumlauf R.

Dev Biol. 2017 Dec 1;432(1):151-164. doi: 10.1016/j.ydbio.2017.09.033. Epub 2017 Oct 2.

5.

HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets.

De Kumar B, Parker HJ, Paulson A, Parrish ME, Pushel I, Singh NP, Zhang Y, Slaughter BD, Unruh JR, Florens L, Zeitlinger J, Krumlauf R.

Genome Res. 2017 Sep;27(9):1501-1512. doi: 10.1101/gr.219386.116. Epub 2017 Aug 7.

6.

Dynamic regulation of Nanog and stem cell-signaling pathways by Hoxa1 during early neuro-ectodermal differentiation of ES cells.

De Kumar B, Parker HJ, Parrish ME, Lange JJ, Slaughter BD, Unruh JR, Paulson A, Krumlauf R.

Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5838-5845. doi: 10.1073/pnas.1610612114.

7.

HOXs and lincRNAs: Two sides of the same coin.

De Kumar B, Krumlauf R.

Sci Adv. 2016 Jan 29;2(1):e1501402. doi: 10.1126/sciadv.1501402. eCollection 2016 Jan. Review.

8.

Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells.

De Kumar B, Parrish ME, Slaughter BD, Unruh JR, Gogol M, Seidel C, Paulson A, Li H, Gaudenz K, Peak A, McDowell W, Fleharty B, Ahn Y, Lin C, Smith E, Shilatifard A, Krumlauf R.

Genome Res. 2015 Aug;25(8):1229-43. doi: 10.1101/gr.184978.114. Epub 2015 May 29.

9.

Hox complex analysis through BAC recombineering.

Parrish M, Ahn Y, Nolte C, De Kumar B, Krumlauf R.

Methods Mol Biol. 2014;1196:59-87. doi: 10.1007/978-1-4939-1242-1_5.

PMID:
25151158
10.

Poised RNA polymerase II changes over developmental time and prepares genes for future expression.

Gaertner B, Johnston J, Chen K, Wallaschek N, Paulson A, Garruss AS, Gaudenz K, De Kumar B, Krumlauf R, Zeitlinger J.

Cell Rep. 2012 Dec 27;2(6):1670-83. doi: 10.1016/j.celrep.2012.11.024. Epub 2012 Dec 20.

11.

Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC).

Lin C, Garrett AS, De Kumar B, Smith ER, Gogol M, Seidel C, Krumlauf R, Shilatifard A.

Genes Dev. 2011 Jul 15;25(14):1486-98. doi: 10.1101/gad.2059211.

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