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Items: 1 to 50 of 101

1.

Straining Flow Spinning of Artificial Silk Fibers: A Review.

Pérez-Rigueiro J, Madurga R, Gañán-Calvo AM, Plaza GR, Elices M, López PA, Daza R, González-Nieto D, Guinea GV.

Biomimetics (Basel). 2018 Oct 5;3(4). pii: E29. doi: 10.3390/biomimetics3040029. Review.

2.

Comparison of cell mechanical measurements provided by Atomic Force Microscopy (AFM) and Micropipette Aspiration (MPA).

Daza R, González-Bermúdez B, Cruces J, De la Fuente M, Plaza GR, Arroyo-Hernández M, Elices M, Pérez-Rigueiro J, Guinea GV.

J Mech Behav Biomed Mater. 2019 Jul;95:103-115. doi: 10.1016/j.jmbbm.2019.03.031. Epub 2019 Apr 8.

PMID:
30986755
3.

Homozygous Mutations in CSF1R Cause a Pediatric-Onset Leukoencephalopathy and Can Result in Congenital Absence of Microglia.

Oosterhof N, Chang IJ, Karimiani EG, Kuil LE, Jensen DM, Daza R, Young E, Astle L, van der Linde HC, Shivaram GM, Demmers J, Latimer CS, Keene CD, Loter E, Maroofian R, van Ham TJ, Hevner RF, Bennett JT.

Am J Hum Genet. 2019 May 2;104(5):936-947. doi: 10.1016/j.ajhg.2019.03.010. Epub 2019 Apr 11.

PMID:
30982608
4.

Prenatal and early life diesel exhaust exposure disrupts cortical lamina organization: Evidence for a reelin-related pathogenic pathway induced by interleukin-6.

Chang YC, Daza R, Hevner R, Costa LG, Cole TB.

Brain Behav Immun. 2019 May;78:105-115. doi: 10.1016/j.bbi.2019.01.013. Epub 2019 Jan 19.

PMID:
30668980
5.

Fibrolamellar Hepatocellular Carcinoma and Noncirrhotic Hyperammonemic Encephalopathy.

Suarez O, Perez M, Garzon M, Daza R, Hernandez G, Salinas C, Ceballos J, de Leon EP, Mugnier J, Beltrán O, Varón A.

Case Reports Hepatol. 2018 Dec 9;2018:7521986. doi: 10.1155/2018/7521986. eCollection 2018.

6.

Accurate classification of BRCA1 variants with saturation genome editing.

Findlay GM, Daza RM, Martin B, Zhang MD, Leith AP, Gasperini M, Janizek JD, Huang X, Starita LM, Shendure J.

Nature. 2018 Oct;562(7726):217-222. doi: 10.1038/s41586-018-0461-z. Epub 2018 Sep 12.

7.

Joint profiling of chromatin accessibility and gene expression in thousands of single cells.

Cao J, Cusanovich DA, Ramani V, Aghamirzaie D, Pliner HA, Hill AJ, Daza RM, McFaline-Figueroa JL, Packer JS, Christiansen L, Steemers FJ, Adey AC, Trapnell C, Shendure J.

Science. 2018 Sep 28;361(6409):1380-1385. doi: 10.1126/science.aau0730. Epub 2018 Aug 30.

PMID:
30166440
8.

Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data.

Pliner HA, Packer JS, McFaline-Figueroa JL, Cusanovich DA, Daza RM, Aghamirzaie D, Srivatsan S, Qiu X, Jackson D, Minkina A, Adey AC, Steemers FJ, Shendure J, Trapnell C.

Mol Cell. 2018 Sep 6;71(5):858-871.e8. doi: 10.1016/j.molcel.2018.06.044. Epub 2018 Aug 2.

PMID:
30078726
9.

A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.

Cusanovich DA, Hill AJ, Aghamirzaie D, Daza RM, Pliner HA, Berletch JB, Filippova GN, Huang X, Christiansen L, DeWitt WS, Lee C, Regalado SG, Read DF, Steemers FJ, Disteche CM, Trapnell C, Shendure J.

Cell. 2018 Aug 23;174(5):1309-1324.e18. doi: 10.1016/j.cell.2018.06.052. Epub 2018 Aug 2.

PMID:
30078704
10.

The cis-regulatory dynamics of embryonic development at single-cell resolution.

Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM.

Nature. 2018 Mar 22;555(7697):538-542. doi: 10.1038/nature25981. Epub 2018 Mar 14.

11.

Enhanced Biological Response of AVS-Functionalized Ti-6Al-4V Alloy through Covalent Immobilization of Collagen.

Rezvanian P, Daza R, López PA, Ramos M, González-Nieto D, Elices M, Guinea GV, Pérez-Rigueiro J.

Sci Rep. 2018 Feb 20;8(1):3337. doi: 10.1038/s41598-018-21685-3.

12.

Comprehensive statistical inference of the clonal structure of cancer from multiple biopsies.

Liu J, Halloran JT, Bilmes JA, Daza RM, Lee C, Mahen EM, Prunkard D, Song C, Blau S, Dorschner MO, Gadi VK, Shendure J, Blau CA, Noble WS.

Sci Rep. 2017 Dec 5;7(1):16943. doi: 10.1038/s41598-017-16813-4.

13.

Comprehensive single-cell transcriptional profiling of a multicellular organism.

Cao J, Packer JS, Ramani V, Cusanovich DA, Huynh C, Daza R, Qiu X, Lee C, Furlan SN, Steemers FJ, Adey A, Waterston RH, Trapnell C, Shendure J.

Science. 2017 Aug 18;357(6352):661-667. doi: 10.1126/science.aam8940.

14.

Neocortical Sox9+ radial glia generate glutamatergic neurons for all layers, but lack discernible evidence of early laminar fate restriction.

Kaplan ES, Ramos-Laguna KA, Mihalas AB, Daza RAM, Hevner RF.

Neural Dev. 2017 Aug 16;12(1):14. doi: 10.1186/s13064-017-0091-4.

15.

A dual-fluorescence reporter in the Eomes locus for live imaging and medium-term lineage tracing.

Probst S, Daza RA, Bader N, Hummel JF, Weiß M, Tanriver Y, Hevner RF, Arnold SJ.

Genesis. 2017 Aug;55(8). doi: 10.1002/dvg.23043. Epub 2017 Jul 14.

16.

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome.

Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, Young SK, Hegarty R, Daza R, Gujja S, Wortman JR, Birren BW, Nusbaum C, Thomas J, Carey CM, Pritham EJ, Feschotte C, Noto T, Mochizuki K, Papazyan R, Taverna SD, Dear PH, Cassidy-Hanley DM, Xiong J, Miao W, Orias E, Coyne RS.

Elife. 2016 Nov 28;5. pii: e19090. doi: 10.7554/eLife.19090.

17.

Fragment Length of Circulating Tumor DNA.

Underhill HR, Kitzman JO, Hellwig S, Welker NC, Daza R, Baker DN, Gligorich KM, Rostomily RC, Bronner MP, Shendure J.

PLoS Genet. 2016 Jul 18;12(7):e1006162. doi: 10.1371/journal.pgen.1006162. eCollection 2016 Jul.

18.

Intermediate Progenitor Cohorts Differentially Generate Cortical Layers and Require Tbr2 for Timely Acquisition of Neuronal Subtype Identity.

Mihalas AB, Elsen GE, Bedogni F, Daza RAM, Ramos-Laguna KA, Arnold SJ, Hevner RF.

Cell Rep. 2016 Jun 28;16(1):92-105. doi: 10.1016/j.celrep.2016.05.072. Epub 2016 Jun 16.

19.

Expanding the clinical and genetic heterogeneity of hereditary disorders of connective tissue.

Alazami AM, Al-Qattan SM, Faqeih E, Alhashem A, Alshammari M, Alzahrani F, Al-Dosari MS, Patel N, Alsagheir A, Binabbas B, Alzaidan H, Alsiddiky A, Alharbi N, Alfadhel M, Kentab A, Daza RM, Kircher M, Shendure J, Hashem M, Alshahrani S, Rahbeeni Z, Khalifa O, Shaheen R, Alkuraya FS.

Hum Genet. 2016 May;135(5):525-540. doi: 10.1007/s00439-016-1660-z. Epub 2016 Mar 29.

PMID:
27023906
20.

Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin.

Snyder MW, Kircher M, Hill AJ, Daza RM, Shendure J.

Cell. 2016 Jan 14;164(1-2):57-68. doi: 10.1016/j.cell.2015.11.050.

21.

Accelerating matchmaking of novel dysmorphology syndromes through clinical and genomic characterization of a large cohort.

Shaheen R, Patel N, Shamseldin H, Alzahrani F, Al-Yamany R, ALMoisheer A, Ewida N, Anazi S, Alnemer M, Elsheikh M, Alfaleh K, Alshammari M, Alhashem A, Alangari AA, Salih MA, Kircher M, Daza RM, Ibrahim N, Wakil SM, Alaqeel A, Altowaijri I, Shendure J, Al-Habib A, Faqieh E, Alkuraya FS.

Genet Med. 2016 Jul;18(7):686-95. doi: 10.1038/gim.2015.147. Epub 2015 Dec 3.

PMID:
26633546
22.

Effects of Lipopolysaccharide and Progesterone Exposures on Embryonic Cerebral Cortex Development in Mice.

Tronnes AA, Koschnitzky J, Daza R, Hitti J, Ramirez JM, Hevner R.

Reprod Sci. 2016 Jun;23(6):771-8. doi: 10.1177/1933719115618273. Epub 2015 Nov 30.

23.

Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing.

Cusanovich DA, Daza R, Adey A, Pliner HA, Christiansen L, Gunderson KL, Steemers FJ, Trapnell C, Shendure J.

Science. 2015 May 22;348(6237):910-4. doi: 10.1126/science.aab1601. Epub 2015 May 7.

24.

Copy-number variation and false positive prenatal aneuploidy screening results.

Snyder MW, Simmons LE, Kitzman JO, Coe BP, Henson JM, Daza RM, Eichler EE, Shendure J, Gammill HS.

N Engl J Med. 2015 Apr 23;372(17):1639-45. doi: 10.1056/NEJMoa1408408. Epub 2015 Apr 1.

25.

Topographical and mechanical characterization of living eukaryotic cells on opaque substrates: development of a general procedure and its application to the study of non-adherent lymphocytes.

Daza R, Cruces J, Arroyo-Hernández M, Marí-Buyé N, De la Fuente M, Plaza GR, Elices M, Pérez-Rigueiro J, Guinea GV.

Phys Biol. 2015 Mar 19;12(2):026005. doi: 10.1088/1478-3975/12/2/026005.

PMID:
25787320
26.

Simple measurement of the apparent viscosity of a cell from only one picture: Application to cardiac stem cells.

Plaza GR, Marí N, Gálvez BG, Bernal A, Guinea GV, Daza R, Pérez-Rigueiro J, Solanas C, Elices M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Nov;90(5-1):052715. Epub 2014 Nov 17.

PMID:
25493824
27.

Spider silk gut: development and characterization of a novel strong spider silk fiber.

Jiang P, Marí-Buyé N, Madurga R, Arroyo-Hernández M, Solanas C, Gañán A, Daza R, Plaza GR, Guinea GV, Elices M, Cenis JL, Pérez-Rigueiro J.

Sci Rep. 2014 Dec 5;4:7326. doi: 10.1038/srep07326.

28.

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity.

Adey A, Kitzman JO, Burton JN, Daza R, Kumar A, Christiansen L, Ronaghi M, Amini S, Gunderson KL, Steemers FJ, Shendure J.

Genome Res. 2014 Dec;24(12):2041-9. doi: 10.1101/gr.178319.114. Epub 2014 Oct 19.

29.

Neuropathologic features of pontocerebellar hypoplasia type 6.

Joseph JT, Innes AM, Smith AC, Vanstone MR, Schwartzentruber JA, Bulman DE, Majewski J, Daza RA, Hevner RF, Michaud J, Boycott KM; FORGE Canada Consortium.

J Neuropathol Exp Neurol. 2014 Nov;73(11):1009-25. doi: 10.1097/NEN.0000000000000123.

PMID:
25289895
30.

Decoding long nanopore sequencing reads of natural DNA.

Laszlo AH, Derrington IM, Ross BC, Brinkerhoff H, Adey A, Nova IC, Craig JM, Langford KW, Samson JM, Daza R, Doering K, Shendure J, Gundlach JH.

Nat Biotechnol. 2014 Aug;32(8):829-33. doi: 10.1038/nbt.2950. Epub 2014 Jun 25.

31.

Neuropathology of brain and spinal malformations in a case of monosomy 1p36.

Shiba N, Daza RA, Shaffer LG, Barkovich AJ, Dobyns WB, Hevner RF.

Acta Neuropathol Commun. 2013 Aug 2;1:45. doi: 10.1186/2051-5960-1-45.

32.

Identification and dynamics of polyglycine II nanocrystals in Argiope trifasciata flagelliform silk.

Perea GB, Riekel C, Guinea GV, Madurga R, Daza R, Burghammer M, Hayashi C, Elices M, Plaza GR, Pérez-Rigueiro J.

Sci Rep. 2013 Oct 28;3:3061. doi: 10.1038/srep03061.

33.

Generation and characterization of a tamoxifen-inducible Eomes(CreER) mouse line.

Pimeisl IM, Tanriver Y, Daza RA, Vauti F, Hevner RF, Arnold HH, Arnold SJ.

Genesis. 2013 Oct;51(10):725-33. doi: 10.1002/dvg.22417. Epub 2013 Aug 30.

34.

The geographic diversity of nontuberculous mycobacteria isolated from pulmonary samples: an NTM-NET collaborative study.

Hoefsloot W, van Ingen J, Andrejak C, Angeby K, Bauriaud R, Bemer P, Beylis N, Boeree MJ, Cacho J, Chihota V, Chimara E, Churchyard G, Cias R, Daza R, Daley CL, Dekhuijzen PN, Domingo D, Drobniewski F, Esteban J, Fauville-Dufaux M, Folkvardsen DB, Gibbons N, Gómez-Mampaso E, Gonzalez R, Hoffmann H, Hsueh PR, Indra A, Jagielski T, Jamieson F, Jankovic M, Jong E, Keane J, Koh WJ, Lange B, Leao S, Macedo R, Mannsåker T, Marras TK, Maugein J, Milburn HJ, Mlinkó T, Morcillo N, Morimoto K, Papaventsis D, Palenque E, Paez-Peña M, Piersimoni C, Polanová M, Rastogi N, Richter E, Ruiz-Serrano MJ, Silva A, da Silva MP, Simsek H, van Soolingen D, Szabó N, Thomson R, Tórtola Fernandez T, Tortoli E, Totten SE, Tyrrell G, Vasankari T, Villar M, Walkiewicz R, Winthrop KL, Wagner D; Nontuberculous Mycobacteria Network European Trials Group.

Eur Respir J. 2013 Dec;42(6):1604-13. doi: 10.1183/09031936.00149212. Epub 2013 Apr 18.

35.

The protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map.

Elsen GE, Hodge RD, Bedogni F, Daza RA, Nelson BR, Shiba N, Reiner SL, Hevner RF.

Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):4081-6. doi: 10.1073/pnas.1209076110. Epub 2013 Feb 19.

36.

Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing.

Kirby A, Gnirke A, Jaffe DB, Barešová V, Pochet N, Blumenstiel B, Ye C, Aird D, Stevens C, Robinson JT, Cabili MN, Gat-Viks I, Kelliher E, Daza R, DeFelice M, Hůlková H, Sovová J, Vylet'al P, Antignac C, Guttman M, Handsaker RE, Perrin D, Steelman S, Sigurdsson S, Scheinman SJ, Sougnez C, Cibulskis K, Parkin M, Green T, Rossin E, Zody MC, Xavier RJ, Pollak MR, Alper SL, Lindblad-Toh K, Gabriel S, Hart PS, Regev A, Nusbaum C, Kmoch S, Bleyer AJ, Lander ES, Daly MJ.

Nat Genet. 2013 Mar;45(3):299-303. doi: 10.1038/ng.2543. Epub 2013 Feb 10.

37.

Dystroglycan on radial glia end feet is required for pial basement membrane integrity and columnar organization of the developing cerebral cortex.

Myshrall TD, Moore SA, Ostendorf AP, Satz JS, Kowalczyk T, Nguyen H, Daza RA, Lau C, Campbell KP, Hevner RF.

J Neuropathol Exp Neurol. 2012 Dec;71(12):1047-63. doi: 10.1097/NEN.0b013e318274a128.

38.

Minor ampullate silks from Nephila and Argiope spiders: tensile properties and microstructural characterization.

Guinea GV, Elices M, Plaza GR, Perea GB, Daza R, Riekel C, Agulló-Rueda F, Hayashi C, Zhao Y, Pérez-Rigueiro J.

Biomacromolecules. 2012 Jul 9;13(7):2087-98. doi: 10.1021/bm3004644. Epub 2012 Jun 18.

PMID:
22668322
39.

Yeast sterol regulatory element-binding protein (SREBP) cleavage requires Cdc48 and Dsc5, a ubiquitin regulatory X domain-containing subunit of the Golgi Dsc E3 ligase.

Stewart EV, Lloyd SJ, Burg JS, Nwosu CC, Lintner RE, Daza R, Russ C, Ponchner K, Nusbaum C, Espenshade PJ.

J Biol Chem. 2012 Jan 2;287(1):672-81. doi: 10.1074/jbc.M111.317370. Epub 2011 Nov 15.

40.

[Development of subcutaneous nodules after mesotherapy].

Ramos A, Roustan G, Lucena JL, Daza RM.

Enferm Infecc Microbiol Clin. 2011 Dec;29(10):775-7. doi: 10.1016/j.eimc.2011.05.008. Epub 2011 Jun 30. Spanish. No abstract available.

PMID:
21722998
41.

[Radiological deterioration in a patient with cavitary lung lesion].

Ramos A, García R, Sanz J, Daza RM.

Enferm Infecc Microbiol Clin. 2011 Mar;29(3):230-1. doi: 10.1016/j.eimc.2010.07.017. Epub 2011 Feb 26. Spanish. No abstract available.

PMID:
21354664
42.

High-quality draft assemblies of mammalian genomes from massively parallel sequence data.

Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, Nicol R, Gnirke A, Nusbaum C, Lander ES, Jaffe DB.

Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1513-8. doi: 10.1073/pnas.1017351108. Epub 2010 Dec 27.

43.

Multiple autism-like behaviors in a novel transgenic mouse model.

Hamilton SM, Spencer CM, Harrison WR, Yuva-Paylor LA, Graham DF, Daza RA, Hevner RF, Overbeek PA, Paylor R.

Behav Brain Res. 2011 Mar 17;218(1):29-41. doi: 10.1016/j.bbr.2010.11.026. Epub 2010 Nov 17.

44.

Tbr1 regulates regional and laminar identity of postmitotic neurons in developing neocortex.

Bedogni F, Hodge RD, Elsen GE, Nelson BR, Daza RA, Beyer RP, Bammler TK, Rubenstein JL, Hevner RF.

Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):13129-34. doi: 10.1073/pnas.1002285107. Epub 2010 Jul 6.

45.

[A 95 year old woman with bilateral nodular pulmonary pattern].

Tutor-Ureta P, Martín-Jiménez ML, Daza R, Vargas JA.

Med Clin (Barc). 2012 Feb 4;138(2):91. doi: 10.1016/j.medcli.2010.04.021. Epub 2010 Jul 1. Spanish. No abstract available.

PMID:
20594564
46.

A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454.

Lennon NJ, Lintner RE, Anderson S, Alvarez P, Barry A, Brockman W, Daza R, Erlich RL, Giannoukos G, Green L, Hollinger A, Hoover CA, Jaffe DB, Juhn F, McCarthy D, Perrin D, Ponchner K, Powers TL, Rizzolo K, Robbins D, Ryan E, Russ C, Sparrow T, Stalker J, Steelman S, Weiand M, Zimmer A, Henn MR, Nusbaum C, Nicol R.

Genome Biol. 2010;11(2):R15. doi: 10.1186/gb-2010-11-2-r15. Epub 2010 Feb 5.

47.

Autism susceptibility candidate 2 (Auts2) encodes a nuclear protein expressed in developing brain regions implicated in autism neuropathology.

Bedogni F, Hodge RD, Nelson BR, Frederick EA, Shiba N, Daza RA, Hevner RF.

Gene Expr Patterns. 2010 Jan;10(1):9-15. doi: 10.1016/j.gep.2009.11.005. Epub 2009 Dec 3.

48.

[Fever and thin-walled cavitary lung lesions].

Ramos A, Daza R, Alvarez-Espejo T, Guzmán MF.

Enferm Infecc Microbiol Clin. 2009 Jun;27(6):363-4. doi: 10.1016/j.eimc.2008.07.010. Epub 2009 May 6. Spanish. No abstract available.

PMID:
19419797
49.

Transmission permeability of tuberculosis involving immigrants, revealed by a multicentre analysis of clusters.

Alonso Rodríguez N, Chaves F, Iñigo J, Bouza E, García de Viedma D; TB Molecular Epidemiology Study Group of Madrid, Andrés S, Cías R, Daza R, Domingo D, Esteban J, García J, Gómez Mampaso E, Herranz M, Palenque E, Ruiz Serrano MJ.

Clin Microbiol Infect. 2009 May;15(5):435-42. doi: 10.1111/j.1469-0691.2008.02670.x. Epub 2009 Mar 23.

50.

Intermediate neuronal progenitors (basal progenitors) produce pyramidal-projection neurons for all layers of cerebral cortex.

Kowalczyk T, Pontious A, Englund C, Daza RA, Bedogni F, Hodge R, Attardo A, Bell C, Huttner WB, Hevner RF.

Cereb Cortex. 2009 Oct;19(10):2439-50. doi: 10.1093/cercor/bhn260. Epub 2009 Jan 23.

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