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Items: 26

1.

CDK12 loss in cancer cells affects DNA damage response genes through premature cleavage and polyadenylation.

Krajewska M, Dries R, Grassetti AV, Dust S, Gao Y, Huang H, Sharma B, Day DS, Kwiatkowski N, Pomaville M, Dodd O, Chipumuro E, Zhang T, Greenleaf AL, Yuan GC, Gray NS, Young RA, Geyer M, Gerber SA, George RE.

Nat Commun. 2019 Apr 15;10(1):1757. doi: 10.1038/s41467-019-09703-y.

2.

A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA.

Wang S, Chen J, Garcia SP, Liang X, Zhang F, Yan P, Yu H, Wei W, Li Z, Wang J, Le H, Han Z, Luo X, Day DS, Stevens SM, Zhang Y, Park PJ, Liu ZJ, Sun K, Yuan GC, Pu WT, Zhang B.

Genome Res. 2019 Feb;29(2):193-207. doi: 10.1101/gr.239053.118. Epub 2019 Jan 22.

3.

Coactivator condensation at super-enhancers links phase separation and gene control.

Sabari BR, Dall'Agnese A, Boija A, Klein IA, Coffey EL, Shrinivas K, Abraham BJ, Hannett NM, Zamudio AV, Manteiga JC, Li CH, Guo YE, Day DS, Schuijers J, Vasile E, Malik S, Hnisz D, Lee TI, Cisse II, Roeder RG, Sharp PA, Chakraborty AK, Young RA.

Science. 2018 Jul 27;361(6400). pii: eaar3958. doi: 10.1126/science.aar3958. Epub 2018 Jun 21.

4.

Transcriptional Dysregulation of MYC Reveals Common Enhancer-Docking Mechanism.

Schuijers J, Manteiga JC, Weintraub AS, Day DS, Zamudio AV, Hnisz D, Lee TI, Young RA.

Cell Rep. 2018 Apr 10;23(2):349-360. doi: 10.1016/j.celrep.2018.03.056.

5.

YY1 Is a Structural Regulator of Enhancer-Promoter Loops.

Weintraub AS, Li CH, Zamudio AV, Sigova AA, Hannett NM, Day DS, Abraham BJ, Cohen MA, Nabet B, Buckley DL, Guo YE, Hnisz D, Jaenisch R, Bradner JE, Gray NS, Young RA.

Cell. 2017 Dec 14;171(7):1573-1588.e28. doi: 10.1016/j.cell.2017.11.008. Epub 2017 Dec 7.

6.

VEGF amplifies transcription through ETS1 acetylation to enable angiogenesis.

Chen J, Fu Y, Day DS, Sun Y, Wang S, Liang X, Gu F, Zhang F, Stevens SM, Zhou P, Li K, Zhang Y, Lin RZ, Smith LEH, Zhang J, Sun K, Melero-Martin JM, Han Z, Park PJ, Zhang B, Pu WT.

Nat Commun. 2017 Aug 29;8(1):383. doi: 10.1038/s41467-017-00405-x.

7.

Insulated Neighborhoods: Structural and Functional Units of Mammalian Gene Control.

Hnisz D, Day DS, Young RA.

Cell. 2016 Nov 17;167(5):1188-1200. doi: 10.1016/j.cell.2016.10.024. Review.

8.

Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types.

Day DS, Zhang B, Stevens SM, Ferrari F, Larschan EN, Park PJ, Pu WT.

Genome Biol. 2016 Jun 3;17(1):120. doi: 10.1186/s13059-016-0984-2.

9.

Activation of proto-oncogenes by disruption of chromosome neighborhoods.

Hnisz D, Weintraub AS, Day DS, Valton AL, Bak RO, Li CH, Goldmann J, Lajoie BR, Fan ZP, Sigova AA, Reddy J, Borges-Rivera D, Lee TI, Jaenisch R, Porteus MH, Dekker J, Young RA.

Science. 2016 Mar 25;351(6280):1454-1458. doi: 10.1126/science.aad9024. Epub 2016 Mar 3.

10.

Comparative analysis of metazoan chromatin organization.

Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ.

Nature. 2014 Aug 28;512(7515):449-52. doi: 10.1038/nature13415.

11.

Interrogating translational efficiency and lineage-specific transcriptomes using ribosome affinity purification.

Zhou P, Zhang Y, Ma Q, Gu F, Day DS, He A, Zhou B, Li J, Stevens SM, Romo D, Pu WT.

Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):15395-400. doi: 10.1073/pnas.1304124110. Epub 2013 Sep 3.

12.

A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity.

Zhang B, Day DS, Ho JW, Song L, Cao J, Christodoulou D, Seidman JG, Crawford GE, Park PJ, Pu WT.

Genome Res. 2013 Jun;23(6):917-27. doi: 10.1101/gr.149674.112. Epub 2013 Apr 1.

13.

Acute sex hormone suppression reduces skeletal muscle sympathetic nerve activity.

Day DS, Gozansky WS, Bell C, Kohrt WM.

Clin Auton Res. 2011 Oct;21(5):339-45. doi: 10.1007/s10286-011-0127-5. Epub 2011 Jun 3.

14.

An assessment of histone-modification antibody quality.

Egelhofer TA, Minoda A, Klugman S, Lee K, Kolasinska-Zwierz P, Alekseyenko AA, Cheung MS, Day DS, Gadel S, Gorchakov AA, Gu T, Kharchenko PV, Kuan S, Latorre I, Linder-Basso D, Luu Y, Ngo Q, Perry M, Rechtsteiner A, Riddle NC, Schwartz YB, Shanower GA, Vielle A, Ahringer J, Elgin SC, Kuroda MI, Pirrotta V, Ren B, Strome S, Park PJ, Karpen GH, Hawkins RD, Lieb JD.

Nat Struct Mol Biol. 2011 Jan;18(1):91-3. doi: 10.1038/nsmb.1972. Epub 2010 Dec 5.

15.

Estimating enrichment of repetitive elements from high-throughput sequence data.

Day DS, Luquette LJ, Park PJ, Kharchenko PV.

Genome Biol. 2010;11(6):R69. doi: 10.1186/gb-2010-11-6-r69. Epub 2010 Jun 28.

16.

Exercise physiologists talk about sex differences.

Day DS.

Med Sci Sports Exerc. 2008 Apr;40(4):646-7. doi: 10.1249/MSS.0b013e318162136d.

PMID:
18317382
17.

Sex hormone suppression reduces resting energy expenditure and {beta}-adrenergic support of resting energy expenditure.

Day DS, Gozansky WS, Van Pelt RE, Schwartz RS, Kohrt WM.

J Clin Endocrinol Metab. 2005 Jun;90(6):3312-7. Epub 2005 Mar 1.

PMID:
15741268
18.

High energy flux mediates the tonically augmented beta-adrenergic support of resting metabolic rate in habitually exercising older adults.

Bell C, Day DS, Jones PP, Christou DD, Petitt DS, Osterberg K, Melby CL, Seals DR.

J Clin Endocrinol Metab. 2004 Jul;89(7):3573-8.

PMID:
15240648
19.

Tonic sympathetic support of metabolic rate is attenuated with age, sedentary lifestyle, and female sex in healthy adults.

Bell C, Seals DR, Monroe MB, Day DS, Shapiro LF, Johnson DG, Jones PP.

J Clin Endocrinol Metab. 2001 Sep;86(9):4440-4.

PMID:
11549689
20.

Sclerosing lobular hyperplasia of the breast after reduction mammaplasty.

Lyle WG, Bossard KR, Day DS.

Ann Plast Surg. 2000 Oct;45(4):454-7.

PMID:
11037173
21.

Pancreatic pseudotumor in an 11-year-old child: imaging findings.

McClain MB, Burton EM, Day DS.

Pediatr Radiol. 2000 Sep;30(9):610-3.

PMID:
11009298
22.

Non-Hodgkin's lymphoma presenting as anasarca: probably mediated by tumor necrosis factor alpha (TNF-alpha).

Jillella AP, Day DS, Severson K, Kallab AM, Burgess R.

Leuk Lymphoma. 2000 Jul;38(3-4):419-22.

PMID:
10830750
23.

Erythroleukemia of childhood and infancy: a report of two cases.

Day DS, Gay JN, Kraus JS, Sabio H, Satya-Prakash KL, Russell B, Wansley WD.

Ann Clin Lab Sci. 1997 Mar-Apr;27(2):142-50.

PMID:
9098514
24.

Hair granuloma of the prostate.

Day DS, Carpenter HD Jr, Allsbrook WC Jr.

Hum Pathol. 1996 Feb;27(2):196-7.

PMID:
8617463
25.

A career ladder program designed by perioperative staff nurses.

Day DS, Scidmore C.

AORN J. 1995 Nov;62(5):805-9.

PMID:
8534079
26.

Deep level transient spectroscopy for diodes with large leakage currents.

Day DS, Helix MJ, Hess K, Streetman BG.

Rev Sci Instrum. 1979 Dec;50(12):1571.

PMID:
18699436

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