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Genome-Scale Sequence Disruption Following Biolistic Transformation in Rice and Maize.

Liu J, Nannas NJ, Fu FF, Shi J, Aspinwall B, Parrott WA, Dawe RK.

Plant Cell. 2019 Feb;31(2):368-383. doi: 10.1105/tpc.18.00613. Epub 2019 Jan 16.


The maize W22 genome provides a foundation for functional genomics and transposon biology.

Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, Dawe RK, Davenport R, Dooner HK, Du LH, Du C, Easterling KA, Gault C, Guan JC, Hunter CT, Jander G, Jiao Y, Koch KE, Kol G, Köllner TG, Kudo T, Li Q, Lu F, Mayfield-Jones D, Mei W, McCarty DR, Noshay JM, Portwood JL 2nd, Ronen G, Settles AM, Shem-Tov D, Shi J, Soifer I, Stein JC, Stitzer MC, Suzuki M, Vera DL, Vollbrecht E, Vrebalov JT, Ware D, Wei S, Wimalanathan K, Woodhouse MR, Xiong W, Brutnell TP.

Nat Genet. 2018 Sep;50(9):1282-1288. doi: 10.1038/s41588-018-0158-0. Epub 2018 Jul 30.


Loss of RNA-Directed DNA Methylation in Maize Chromomethylase and DDM1-Type Nucleosome Remodeler Mutants.

Fu FF, Dawe RK, Gent JI.

Plant Cell. 2018 Jul;30(7):1617-1627. doi: 10.1105/tpc.18.00053. Epub 2018 Jun 8.


Functional diversification of the kinesin-14 family in land plants.

Gicking AM, Swentowsky KW, Dawe RK, Qiu W.

FEBS Lett. 2018 Jun;592(12):1918-1928. doi: 10.1002/1873-3468.13094. Epub 2018 Jun 1. Review.


A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize.

Dawe RK, Lowry EG, Gent JI, Stitzer MC, Swentowsky KW, Higgins DM, Ross-Ibarra J, Wallace JG, Kanizay LB, Alabady M, Qiu W, Tseng KF, Wang N, Gao Z, Birchler JA, Harkess AE, Hodges AL, Hiatt EN.

Cell. 2018 May 3;173(4):839-850.e18. doi: 10.1016/j.cell.2018.03.009. Epub 2018 Apr 5.


Centromere Size and Its Relationship to Haploid Formation in Plants.

Wang N, Dawe RK.

Mol Plant. 2018 Mar 5;11(3):398-406. doi: 10.1016/j.molp.2017.12.009. Epub 2017 Dec 19. Review.


Is It Ordered Correctly? Validating Genome Assemblies by Optical Mapping.

Udall JA, Dawe RK.

Plant Cell. 2018 Jan;30(1):7-14. doi: 10.1105/tpc.17.00514. Epub 2017 Dec 20. Review.


Modeling the Evolution of Female Meiotic Drive in Maize.

Hall DW, Dawe RK.

G3 (Bethesda). 2018 Jan 4;8(1):123-130. doi: 10.1534/g3.117.300073.


Fitness Costs and Variation in Transmission Distortion Associated with the Abnormal Chromosome 10 Meiotic Drive System in Maize.

Higgins DM, Lowry EG, Kanizay LB, Becraft PW, Hall DW, Dawe RK.

Genetics. 2018 Jan;208(1):297-305. doi: 10.1534/genetics.117.300060. Epub 2017 Nov 9.


Stable centromere positioning in diverse sequence contexts of complex and satellite centromeres of maize and wild relatives.

Gent JI, Wang N, Dawe RK.

Genome Biol. 2017 Jun 21;18(1):121. doi: 10.1186/s13059-017-1249-4.


Improved maize reference genome with single-molecule technologies.

Jiao Y, Peluso P, Shi J, Liang T, Stitzer MC, Wang B, Campbell MS, Stein JC, Wei X, Chin CS, Guill K, Regulski M, Kumari S, Olson A, Gent J, Schneider KL, Wolfgruber TK, May MR, Springer NM, Antoniou E, McCombie WR, Presting GG, McMullen M, Ross-Ibarra J, Dawe RK, Hastie A, Rank DR, Ware D.

Nature. 2017 Jun 22;546(7659):524-527. doi: 10.1038/nature22971. Epub 2017 Jun 12.


Anaphase asymmetry and dynamic repositioning of the division plane during maize meiosis.

Nannas NJ, Higgins DM, Dawe RK.

J Cell Sci. 2016 Nov 1;129(21):4014-4024. Epub 2016 Sep 8.


The Maize Divergent spindle-1 (dv1) Gene Encodes a Kinesin-14A Motor Protein Required for Meiotic Spindle Pole Organization.

Higgins DM, Nannas NJ, Dawe RK.

Front Plant Sci. 2016 Aug 25;7:1277. doi: 10.3389/fpls.2016.01277. eCollection 2016.


High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events.

Wolfgruber TK, Nakashima MM, Schneider KL, Sharma A, Xie Z, Albert PS, Xu R, Bilinski P, Dawe RK, Ross-Ibarra J, Birchler JA, Presting GG.

Front Plant Sci. 2016 Mar 23;7:308. doi: 10.3389/fpls.2016.00308. eCollection 2016.


Gene Expression and Chromatin Modifications Associated with Maize Centromeres.

Zhao H, Zhu X, Wang K, Gent JI, Zhang W, Dawe RK, Jiang J.

G3 (Bethesda). 2015 Nov 12;6(1):183-92. doi: 10.1534/g3.115.022764.


RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome.

Li Q, Gent JI, Zynda G, Song J, Makarevitch I, Hirsch CD, Hirsch CN, Dawe RK, Madzima TF, McGinnis KM, Lisch D, Schmitz RJ, Vaughn MW, Springer NM.

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14728-33. doi: 10.1073/pnas.1514680112. Epub 2015 Nov 9.


Generation of a Maize B Centromere Minimal Map Containing the Central Core Domain.

Ellis NA, Douglas RN, Jackson CE, Birchler JA, Dawe RK.

G3 (Bethesda). 2015 Oct 28;5(12):2857-64. doi: 10.1534/g3.115.022889.


Stable Patterns of CENH3 Occupancy Through Maize Lineages Containing Genetically Similar Centromeres.

Gent JI, Wang K, Jiang J, Dawe RK.

Genetics. 2015 Aug;200(4):1105-16. doi: 10.1534/genetics.115.177360. Epub 2015 Jun 10.


Genetic and genomic toolbox of Zea mays.

Nannas NJ, Dawe RK.

Genetics. 2015 Mar;199(3):655-69. doi: 10.1534/genetics.114.165183. Review.


Accessible DNA and relative depletion of H3K9me2 at maize loci undergoing RNA-directed DNA methylation.

Gent JI, Madzima TF, Bader R, Kent MR, Zhang X, Stam M, McGinnis KM, Dawe RK.

Plant Cell. 2014 Dec;26(12):4903-17. doi: 10.1105/tpc.114.130427. Epub 2014 Dec 2.


Diversity and evolution of centromere repeats in the maize genome.

Bilinski P, Distor K, Gutierrez-Lopez J, Mendoza GM, Shi J, Dawe RK, Ross-Ibarra J.

Chromosoma. 2015 Mar;124(1):57-65. doi: 10.1007/s00412-014-0483-8. Epub 2014 Sep 5.


Maize centromeres expand and adopt a uniform size in the genetic background of oat.

Wang K, Wu Y, Zhang W, Dawe RK, Jiang J.

Genome Res. 2014 Jan;24(1):107-16. doi: 10.1101/gr.160887.113. Epub 2013 Oct 7.


Live imaging of chromosome dynamics.

Sheehan MJ, Dawe RK, Pawlowski WP.

Methods Mol Biol. 2013;990:79-92. doi: 10.1007/978-1-62703-333-6_8.


Intragenomic conflict between the two major knob repeats of maize.

Kanizay LB, Albert PS, Birchler JA, Dawe RK.

Genetics. 2013 May;194(1):81-9. doi: 10.1534/genetics.112.148882. Epub 2013 Mar 2.


Diversity and abundance of the abnormal chromosome 10 meiotic drive complex in Zea mays.

Kanizay LB, Pyhäjärvi T, Lowry EG, Hufford MB, Peterson DG, Ross-Ibarra J, Dawe RK.

Heredity (Edinb). 2013 Jun;110(6):570-7. doi: 10.1038/hdy.2013.2. Epub 2013 Feb 27.


Spreading of heterochromatin is limited to specific families of maize retrotransposons.

Eichten SR, Ellis NA, Makarevitch I, Yeh CT, Gent JI, Guo L, McGinnis KM, Zhang X, Schnable PS, Vaughn MW, Dawe RK, Springer NM.

PLoS Genet. 2012;8(12):e1003127. doi: 10.1371/journal.pgen.1003127. Epub 2012 Dec 13.


CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize.

Gent JI, Ellis NA, Guo L, Harkess AE, Yao Y, Zhang X, Dawe RK.

Genome Res. 2013 Apr;23(4):628-37. doi: 10.1101/gr.146985.112. Epub 2012 Dec 26.


An Arabidopsis tissue-specific RNAi method for studying genes essential to mitosis.

Burgos-Rivera B, Dawe RK.

PLoS One. 2012;7(12):e51388. doi: 10.1371/journal.pone.0051388. Epub 2012 Dec 7.


Maize chromosomal knobs are located in gene-dense areas and suppress local recombination.

Ghaffari R, Cannon EK, Kanizay LB, Lawrence CJ, Dawe RK.

Chromosoma. 2013 Mar;122(1-2):67-75. doi: 10.1007/s00412-012-0391-8. Epub 2012 Dec 9.


RNA as a structural and regulatory component of the centromere.

Gent JI, Dawe RK.

Annu Rev Genet. 2012;46:443-53. doi: 10.1146/annurev-genet-110711-155419. Epub 2012 Sep 4. Review.


Total centromere size and genome size are strongly correlated in ten grass species.

Zhang H, Dawe RK.

Chromosome Res. 2012 May;20(4):403-12. doi: 10.1007/s10577-012-9284-1. Epub 2012 May 3.


Megabase-scale inversion polymorphism in the wild ancestor of maize.

Fang Z, Pyhäjärvi T, Weber AL, Dawe RK, Glaubitz JC, González Jde J, Ross-Ibarra C, Doebley J, Morrell PL, Ross-Ibarra J.

Genetics. 2012 Jul;191(3):883-94. doi: 10.1534/genetics.112.138578. Epub 2012 Apr 27.


Stable integration of an engineered megabase repeat array into the maize genome.

Zhang H, Phan BH, Wang K, Artelt BJ, Jiang J, Parrott WA, Dawe RK.

Plant J. 2012 Apr;70(2):357-65. doi: 10.1111/j.1365-313X.2011.04867.x. Epub 2012 Jan 10.


Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications.

Gent JI, Dong Y, Jiang J, Dawe RK.

Nucleic Acids Res. 2012 Feb;40(4):1550-60. doi: 10.1093/nar/gkr862. Epub 2011 Nov 4.


Mechanisms of plant spindle formation.

Zhang H, Dawe RK.

Chromosome Res. 2011 Apr;19(3):335-44. doi: 10.1007/s10577-011-9190-y. Review.


Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning.

Gent JI, Schneider KL, Topp CN, Rodriguez C, Presting GG, Dawe RK.

Epigenetics Chromatin. 2011 Feb 25;4:3. doi: 10.1186/1756-8935-4-3.


Widespread gene conversion in centromere cores.

Shi J, Wolf SE, Burke JM, Presting GG, Ross-Ibarra J, Dawe RK.

PLoS Biol. 2010 Mar 9;8(3):e1000327. doi: 10.1371/journal.pbio.1000327.


DNA binding of centromere protein C (CENPC) is stabilized by single-stranded RNA.

Du Y, Topp CN, Dawe RK.

PLoS Genet. 2010 Feb 5;6(2):e1000835. doi: 10.1371/journal.pgen.1000835.


The B73 maize genome: complexity, diversity, and dynamics.

Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK.

Science. 2009 Nov 20;326(5956):1112-5. doi: 10.1126/science.1178534. Erratum in: Science. 2012 Aug 31;337(6098):1040.


Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons.

Wolfgruber TK, Sharma A, Schneider KL, Albert PS, Koo DH, Shi J, Gao Z, Han F, Lee H, Xu R, Allison J, Birchler JA, Jiang J, Dawe RK, Presting GG.

PLoS Genet. 2009 Nov;5(11):e1000743. doi: 10.1371/journal.pgen.1000743. Epub 2009 Nov 20.


Fused sister kinetochores initiate the reductional division in meiosis I.

Li X, Dawe RK.

Nat Cell Biol. 2009 Sep;11(9):1103-8. doi: 10.1038/ncb1923. Epub 2009 Aug 16.


Identification of a maize neocentromere in an oat-maize addition line.

Topp CN, Okagaki RJ, Melo JR, Kynast RG, Phillips RL, Dawe RK.

Cytogenet Genome Res. 2009;124(3-4):228-38. doi: 10.1159/000218128. Epub 2009 Jun 25.


Centromeres: long intergenic spaces with adaptive features.

Kanizay L, Dawe RK.

Funct Integr Genomics. 2009 Aug;9(3):287-92. doi: 10.1007/s10142-009-0124-0. Epub 2009 May 12. Review.


Engineered plant minichromosomes: a bottom-up success?

Houben A, Dawe RK, Jiang J, Schubert I.

Plant Cell. 2008 Jan;20(1):8-10. doi: 10.1105/tpc.107.056622. Epub 2008 Jan 25. No abstract available.


Maize NDC80 is a constitutive feature of the central kinetochore.

Du Y, Dawe RK.

Chromosome Res. 2007;15(6):767-75. Epub 2007 Jul 24.


Transformation of rice with long DNA-segments consisting of random genomic DNA or centromere-specific DNA.

Phan BH, Jin W, Topp CN, Zhong CX, Jiang J, Dawe RK, Parrott WA.

Transgenic Res. 2007 Jun;16(3):341-51. Epub 2006 Nov 14.


Centromeres put epigenetics in the driver's seat.

Dawe RK, Henikoff S.

Trends Biochem Sci. 2006 Dec;31(12):662-9. Epub 2006 Oct 30. Review.


Reinterpreting pericentromeric heterochromatin.

Topp CN, Dawe RK.

Curr Opin Plant Biol. 2006 Dec;9(6):647-53. Epub 2006 Oct 2. Review.


Precise centromere mapping using a combination of repeat junction markers and chromatin immunoprecipitation-polymerase chain reaction.

Luce AC, Sharma A, Mollere OS, Wolfgruber TK, Nagaki K, Jiang J, Presting GG, Dawe RK.

Genetics. 2006 Oct;174(2):1057-61. Epub 2006 Sep 1.


The maize Ab10 meiotic drive system maps to supernumerary sequences in a large complex haplotype.

Mroczek RJ, Melo JR, Luce AC, Hiatt EN, Dawe RK.

Genetics. 2006 Sep;174(1):145-54. Epub 2006 Jul 18.

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