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Items: 1 to 50 of 244

1.

DisCVR: Rapid viral diagnosis from high-throughput sequencing data.

Maabar M, Davison AJ, Vučak M, Thorburn F, Murcia PR, Gunson R, Palmarini M, Hughes J.

Virus Evol. 2019 Aug 26;5(2):vez033. doi: 10.1093/ve/vez033. eCollection 2019 Jul.

2.

Novel Virus Related to Kaposi's Sarcoma-Associated Herpesvirus from Colobus Monkey.

Dhingra A, Ganzenmueller T, Hage E, Suárez NM, Mätz-Rensing K, Widmer D, Pöhlmann S, Davison AJ, Schulz TF, Kaul A.

Emerg Infect Dis. 2019 Aug;25(8):1548-1551. doi: 10.3201/eid2508.181802.

3.

Analysis of Paramyxovirus Transcription and Replication by High-Throughput Sequencing.

Wignall-Fleming EB, Hughes DJ, Vattipally S, Modha S, Goodbourn S, Davison AJ, Randall RE.

J Virol. 2019 Aug 13;93(17). pii: e00571-19. doi: 10.1128/JVI.00571-19. Print 2019 Sep 1.

4.

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019).

Walker PJ, Siddell SG, Lefkowitz EJ, Mushegian AR, Dempsey DM, Dutilh BE, Harrach B, Harrison RL, Hendrickson RC, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Sep;164(9):2417-2429. doi: 10.1007/s00705-019-04306-w.

PMID:
31187277
5.

Michael Adams: new life member of the International Committee on Taxonomy of Viruses (ICTV).

Mushegian AR, Davison AJ.

Arch Virol. 2019 Aug;164(8):2221. doi: 10.1007/s00705-019-04290-1. Epub 2019 May 31. No abstract available.

PMID:
31152249
6.

Human Cytomegalovirus Genomes Sequenced Directly From Clinical Material: Variation, Multiple-Strain Infection, Recombination, and Gene Loss.

Suárez NM, Wilkie GS, Hage E, Camiolo S, Holton M, Hughes J, Maabar M, Vattipally SB, Dhingra A, Gompels UA, Wilkinson GWG, Baldanti F, Furione M, Lilleri D, Arossa A, Ganzenmueller T, Gerna G, Hubáček P, Schulz TF, Wolf D, Zavattoni M, Davison AJ.

J Infect Dis. 2019 Jul 31;220(5):781-791. doi: 10.1093/infdis/jiz208.

7.

Multiple-Strain Infections of Human Cytomegalovirus With High Genomic Diversity Are Common in Breast Milk From Human Immunodeficiency Virus-Infected Women in Zambia.

Suárez NM, Musonda KG, Escriva E, Njenga M, Agbueze A, Camiolo S, Davison AJ, Gompels UA.

J Infect Dis. 2019 Jul 31;220(5):792-801. doi: 10.1093/infdis/jiz209.

8.

Complete Genome Sequence of an Ictalurid Herpesvirus 1 Strain Isolated from Blue Catfish (Ictalurus furcatus).

Subramaniam K, Venugopalan A, Davison AJ, Griffin MJ, Ford L, Waltzek TB, Hanson L.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00082-19. doi: 10.1128/MRA.00082-19.

9.

The switch between acute and persistent paramyxovirus infection caused by single amino acid substitutions in the RNA polymerase P subunit.

Young DF, Wignall-Fleming EB, Busse DC, Pickin MJ, Hankinson J, Randall EM, Tavendale A, Davison AJ, Lamont D, Tregoning JS, Goodbourn S, Randall RE.

PLoS Pathog. 2019 Feb 11;15(2):e1007561. doi: 10.1371/journal.ppat.1007561. eCollection 2019 Feb.

10.

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018).

Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Sanfaçon H, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Mar;164(3):943-946. doi: 10.1007/s00705-018-04136-2.

PMID:
30663020
11.

Genome Sequences of Five African Swine Fever Virus Genotype IX Isolates from Domestic Pigs in Uganda.

Masembe C, Sreenu VB, Da Silva Filipe A, Wilkie GS, Ogweng P, Mayega FJ, Muwanika VB, Biek R, Palmarini M, Davison AJ.

Microbiol Resour Announc. 2018 Oct 4;7(13). pii: e01018-18. doi: 10.1128/MRA.01018-18. eCollection 2018 Oct.

12.

High-Definition Analysis of Host Protein Stability during Human Cytomegalovirus Infection Reveals Antiviral Factors and Viral Evasion Mechanisms.

Nightingale K, Lin KM, Ravenhill BJ, Davies C, Nobre L, Fielding CA, Ruckova E, Fletcher-Etherington A, Soday L, Nichols H, Sugrue D, Wang ECY, Moreno P, Umrania Y, Huttlin EL, Antrobus R, Davison AJ, Wilkinson GWG, Stanton RJ, Tomasec P, Weekes MP.

Cell Host Microbe. 2018 Sep 12;24(3):447-460.e11. doi: 10.1016/j.chom.2018.07.011. Epub 2018 Aug 16.

13.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

King AMQ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2018 Sep;163(9):2601-2631. doi: 10.1007/s00705-018-3847-1. Epub 2018 May 12.

PMID:
29754305
14.

Genome Sequence of a Novel Alloherpesvirus Isolated from Glass Catfish (Kryptopterus bicirrhis).

Henriquez RN, Polchana J, Kanchanakhan S, Davison AJ, Waltzek TB, Subramaniam K.

Genome Announc. 2018 May 10;6(19). pii: e00403-18. doi: 10.1128/genomeA.00403-18.

15.

Genomic and biologic comparisons of cyprinid herpesvirus 3 strains.

Gao Y, Suárez NM, Wilkie GS, Dong C, Bergmann S, Lee PA, Davison AJ, Vanderplasschen AFC, Boutier M.

Vet Res. 2018 May 2;49(1):40. doi: 10.1186/s13567-018-0532-z.

16.

ViCTree: an automated framework for taxonomic classification from protein sequences.

Modha S, Thanki AS, Cotmore SF, Davison AJ, Hughes J.

Bioinformatics. 2018 Jul 1;34(13):2195-2200. doi: 10.1093/bioinformatics/bty099.

17.

Biocontrol of invasive carp: Risks abound.

Marshall J, Davison AJ, Kopf RK, Boutier M, Stevenson P, Vanderplasschen A.

Science. 2018 Feb 23;359(6378):877. doi: 10.1126/science.aar7827. No abstract available.

18.

Genetic diversity of equine herpesvirus 1 isolated from neurological, abortigenic and respiratory disease outbreaks.

Bryant NA, Wilkie GS, Russell CA, Compston L, Grafham D, Clissold L, McLay K, Medcalf L, Newton R, Davison AJ, Elton DM.

Transbound Emerg Dis. 2018 Jun;65(3):817-832. doi: 10.1111/tbed.12809. Epub 2018 Feb 9.

19.

Equid herpesvirus 8: Complete genome sequence and association with abortion in mares.

Garvey M, Suárez NM, Kerr K, Hector R, Moloney-Quinn L, Arkins S, Davison AJ, Cullinane A.

PLoS One. 2018 Feb 7;13(2):e0192301. doi: 10.1371/journal.pone.0192301. eCollection 2018.

20.

Genome Sequence of an Alphaherpesvirus from a Beluga Whale (Delphinapterus leucas).

Davison AJ, Nielsen O, Subramaniam K, Jacob JM, Romero CH, Burek-Huntington KA, Waltzek TB.

Genome Announc. 2017 Oct 19;5(42). pii: e01100-17. doi: 10.1128/genomeA.01100-17.

21.

Inherited Chromosomally Integrated Human Herpesvirus 6 Genomes Are Ancient, Intact, and Potentially Able To Reactivate from Telomeres.

Zhang E, Bell AJ, Wilkie GS, Suárez NM, Batini C, Veal CD, Armendáriz-Castillo I, Neumann R, Cotton VE, Huang Y, Porteous DJ, Jarrett RF, Davison AJ, Royle NJ.

J Virol. 2017 Oct 27;91(22). pii: e01137-17. doi: 10.1128/JVI.01137-17. Print 2017 Nov 15.

22.

Proteomic and Functional Analyses of the Virion Transmembrane Proteome of Cyprinid Herpesvirus 3.

Vancsok C, Peñaranda MMD, Raj VS, Leroy B, Jazowiecka-Rakus J, Boutier M, Gao Y, Wilkie GS, Suárez NM, Wattiez R, Gillet L, Davison AJ, Vanderplasschen AFC.

J Virol. 2017 Oct 13;91(21). pii: e01209-17. doi: 10.1128/JVI.01209-17. Print 2017 Nov 1.

23.

Genome Sequence of a Gammaherpesvirus from a Common Bottlenose Dolphin (Tursiops truncatus).

Davison AJ, Subramaniam K, Kerr K, Jacob JM, Landrau-Giovannetti N, Walsh MT, Wells RS, Waltzek TB.

Genome Announc. 2017 Aug 3;5(31). pii: e00777-17. doi: 10.1128/genomeA.00777-17.

24.

Identification of an essential virulence gene of cyprinid herpesvirus 3.

Boutier M, Gao Y, Vancsok C, Suárez NM, Davison AJ, Vanderplasschen A.

Antiviral Res. 2017 Sep;145:60-69. doi: 10.1016/j.antiviral.2017.07.002. Epub 2017 Jul 6.

25.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017).

Adams MJ, Lefkowitz EJ, King AMQ, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert M, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Gorbalenya AE, Davison AJ.

Arch Virol. 2017 Aug;162(8):2505-2538. doi: 10.1007/s00705-017-3358-5. Epub 2017 Apr 22.

PMID:
28434098
26.

Genomic analysis of chimeric human cytomegalovirus vaccine candidates derived from strains Towne and Toledo.

Suárez NM, Lau B, Kemble GM, Lee R, Mocarski ES, Wilkinson GWG, Adler SP, McVoy MA, Davison AJ.

Virus Genes. 2017 Aug;53(4):650-655. doi: 10.1007/s11262-017-1452-0. Epub 2017 Apr 8.

27.

Characterization of Human Cytomegalovirus Genome Diversity in Immunocompromised Hosts by Whole-Genome Sequencing Directly From Clinical Specimens.

Hage E, Wilkie GS, Linnenweber-Held S, Dhingra A, Suárez NM, Schmidt JJ, Kay-Fedorov PC, Mischak-Weissinger E, Heim A, Schwarz A, Schulz TF, Davison AJ, Ganzenmueller T.

J Infect Dis. 2017 Jun 1;215(11):1673-1683. doi: 10.1093/infdis/jix157.

PMID:
28368496
28.

Journal of General Virology - Introduction to 'ICTV Virus Taxonomy Profiles'.

Davison AJ.

J Gen Virol. 2017 Jan;98(1):1. doi: 10.1099/jgv.0.000686. No abstract available.

29.

Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation.

Fielding CA, Weekes MP, Nobre LV, Ruckova E, Wilkie GS, Paulo JA, Chang C, Suárez NM, Davies JA, Antrobus R, Stanton RJ, Aicheler RJ, Nichols H, Vojtesek B, Trowsdale J, Davison AJ, Gygi SP, Tomasec P, Lehner PJ, Wilkinson GW.

Elife. 2017 Feb 10;6. pii: e22206. doi: 10.7554/eLife.22206.

30.

Conserved Fever Pathways across Vertebrates: A Herpesvirus Expressed Decoy TNF-α Receptor Delays Behavioral Fever in Fish.

Rakus K, Ronsmans M, Forlenza M, Boutier M, Piazzon MC, Jazowiecka-Rakus J, Gatherer D, Athanasiadis A, Farnir F, Davison AJ, Boudinot P, Michiels T, Wiegertjes GF, Vanderplasschen A.

Cell Host Microbe. 2017 Feb 8;21(2):244-253. doi: 10.1016/j.chom.2017.01.010.

31.

Consensus statement: Virus taxonomy in the age of metagenomics.

Simmonds P, Adams MJ, Benkő M, Breitbart M, Brister JR, Carstens EB, Davison AJ, Delwart E, Gorbalenya AE, Harrach B, Hull R, King AM, Koonin EV, Krupovic M, Kuhn JH, Lefkowitz EJ, Nibert ML, Orton R, Roossinck MJ, Sabanadzovic S, Sullivan MB, Suttle CA, Tesh RB, van der Vlugt RA, Varsani A, Zerbini FM.

Nat Rev Microbiol. 2017 Mar;15(3):161-168. doi: 10.1038/nrmicro.2016.177. Epub 2017 Jan 3.

PMID:
28134265
32.

50 years of the International Committee on Taxonomy of Viruses: progress and prospects.

Adams MJ, Lefkowitz EJ, King AM, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert ML, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Orton RJ, Smith DB, Gorbalenya AE, Davison AJ.

Arch Virol. 2017 May;162(5):1441-1446. doi: 10.1007/s00705-016-3215-y. Epub 2017 Jan 11.

PMID:
28078475
33.

Identification of compounds with anti-human cytomegalovirus activity that inhibit production of IE2 proteins.

Beelontally R, Wilkie GS, Lau B, Goodmaker CJ, Ho CMK, Swanson CM, Deng X, Wang J, Gray NS, Davison AJ, Strang BL.

Antiviral Res. 2017 Feb;138:61-67. doi: 10.1016/j.antiviral.2016.12.006. Epub 2016 Dec 9.

34.

Genomic duplication and translocation of reactivation transactivator and bZIP-homolog genes is a conserved event in alcelaphine herpesvirus 1.

Myster F, van Beurden SJ, Sorel O, Suárez NM, Vanderplasschen A, Davison AJ, Dewals BG.

Sci Rep. 2016 Dec 7;6:38607. doi: 10.1038/srep38607.

35.

Eric Carstens: new life member of the International Committee on Taxonomy of Viruses (ICTV).

Adams MJ, Davison AJ.

Arch Virol. 2016 Dec;161(12):3601. Epub 2016 Sep 2. No abstract available.

PMID:
27589978
36.

Genome Sequence of the Parainfluenza Virus 5 Strain That Persistently Infects AGS Cells.

Wignall-Fleming E, Young DF, Goodbourn S, Davison AJ, Randall RE.

Genome Announc. 2016 Jul 21;4(4). pii: e00653-16. doi: 10.1128/genomeA.00653-16.

37.

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2016).

Adams MJ, Lefkowitz EJ, King AM, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert M, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Gorbalenya AE, Davison AJ.

Arch Virol. 2016 Oct;161(10):2921-49. doi: 10.1007/s00705-016-2977-6. Epub 2016 Jul 16.

PMID:
27424026
38.

Bioinformatics tools for analysing viral genomic data.

Orton RJ, Gu Q, Hughes J, Maabar M, Modha S, Vattipally SB, Wilkie GS, Davison AJ.

Rev Sci Tech. 2016 Apr;35(1):271-85. doi: 10.20506/rst.35.1.2432. Review.

39.

Genome Sequence of Canine Herpesvirus.

Papageorgiou KV, Suárez NM, Wilkie GS, McDonald M, Graham EM, Davison AJ.

PLoS One. 2016 May 23;11(5):e0156015. doi: 10.1371/journal.pone.0156015. eCollection 2016.

40.

HHV-8-unrelated primary effusion-like lymphoma associated with clonal loss of inherited chromosomally-integrated human herpesvirus-6A from the telomere of chromosome 19q.

Zhang E, Cotton VE, Hidalgo-Bravo A, Huang Y, Bell AJ, Jarrett RF, Wilkie GS, Davison AJ, Nacheva EP, Siebert R, Majid A, Kelpanides I, Jayne S, Dyer MJ, Royle NJ.

Sci Rep. 2016 Mar 7;6:22730. doi: 10.1038/srep22730.

41.

Genetic Stability of Bacterial Artificial Chromosome-Derived Human Cytomegalovirus during Culture In Vitro.

Murrell I, Wilkie GS, Davison AJ, Statkute E, Fielding CA, Tomasec P, Wilkinson GW, Stanton RJ.

J Virol. 2016 Mar 28;90(8):3929-43. doi: 10.1128/JVI.02858-15. Print 2016 Apr.

42.

Genome Sequences of Two Pseudorabies Virus Strains Isolated in Greece.

Papageorgiou KV, Suárez NM, Wilkie GS, Filioussis G, Papaioannou N, Nauwynck HJ, Davison AJ, Kritas SK.

Genome Announc. 2016 Jan 21;4(1). pii: e01624-15. doi: 10.1128/genomeA.01624-15.

43.

The Genome of a Tortoise Herpesvirus (Testudinid Herpesvirus 3) Has a Novel Structure and Contains a Large Region That Is Not Required for Replication In Vitro or Virulence In Vivo.

Gandar F, Wilkie GS, Gatherer D, Kerr K, Marlier D, Diez M, Marschang RE, Mast J, Dewals BG, Davison AJ, Vanderplasschen AF.

J Virol. 2015 Nov;89(22):11438-56. doi: 10.1128/JVI.01794-15. Epub 2015 Sep 2.

44.

Cyprinid Herpesvirus 3: An Archetype of Fish Alloherpesviruses.

Boutier M, Ronsmans M, Rakus K, Jazowiecka-Rakus J, Vancsok C, Morvan L, Peñaranda MM, Stone DM, Way K, van Beurden SJ, Davison AJ, Vanderplasschen A.

Adv Virus Res. 2015;93:161-256. doi: 10.1016/bs.aivir.2015.03.001. Epub 2015 Apr 29. Review.

45.

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015).

Adams MJ, Lefkowitz EJ, King AM, Bamford DH, Breitbart M, Davison AJ, Ghabrial SA, Gorbalenya AE, Knowles NJ, Krell P, Lavigne R, Prangishvili D, Sanfaçon H, Siddell SG, Simmonds P, Carstens EB.

Arch Virol. 2015 Jul;160(7):1837-50. doi: 10.1007/s00705-015-2425-z.

PMID:
25913692
46.

Human cytomegalovirus: taking the strain.

Wilkinson GW, Davison AJ, Tomasec P, Fielding CA, Aicheler R, Murrell I, Seirafian S, Wang EC, Weekes M, Lehner PJ, Wilkie GS, Stanton RJ.

Med Microbiol Immunol. 2015 Jun;204(3):273-84. doi: 10.1007/s00430-015-0411-4. Epub 2015 Apr 17. Review.

47.

Viral inhibition of the transporter associated with antigen processing (TAP): a striking example of functional convergent evolution.

Verweij MC, Horst D, Griffin BD, Luteijn RD, Davison AJ, Ressing ME, Wiertz EJ.

PLoS Pathog. 2015 Apr 16;11(4):e1004743. doi: 10.1371/journal.ppat.1004743. eCollection 2015 Apr. Review.

48.

Plasma membrane profiling defines an expanded class of cell surface proteins selectively targeted for degradation by HCMV US2 in cooperation with UL141.

Hsu JL, van den Boomen DJ, Tomasec P, Weekes MP, Antrobus R, Stanton RJ, Ruckova E, Sugrue D, Wilkie GS, Davison AJ, Wilkinson GW, Lehner PJ.

PLoS Pathog. 2015 Apr 14;11(4):e1004811. doi: 10.1371/journal.ppat.1004811. eCollection 2015 Apr.

49.

Genome sequences of equid herpesviruses 2 and 5.

Wilkie GS, Kerr K, Stewart JP, Studdert MJ, Davison AJ.

Genome Announc. 2015 Mar 12;3(2). pii: e00119-15. doi: 10.1128/genomeA.00119-15.

50.

Rational development of an attenuated recombinant cyprinid herpesvirus 3 vaccine using prokaryotic mutagenesis and in vivo bioluminescent imaging.

Boutier M, Ronsmans M, Ouyang P, Fournier G, Reschner A, Rakus K, Wilkie GS, Farnir F, Bayrou C, Lieffrig F, Li H, Desmecht D, Davison AJ, Vanderplasschen A.

PLoS Pathog. 2015 Feb 20;11(2):e1004690. doi: 10.1371/journal.ppat.1004690. eCollection 2015 Feb. Erratum in: PLoS Pathog. 2015 Apr;11(4):e1004861.

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