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Items: 1 to 50 of 150

1.

Seeing is believing: our evolving view of kinetochore structure, composition, and assembly.

Hamilton G, Dimitrova Y, Davis TN.

Curr Opin Cell Biol. 2019 May 8;60:44-52. doi: 10.1016/j.ceb.2019.03.016. [Epub ahead of print] Review.

PMID:
31078123
2.

Tight bending of the Ndc80 complex provides intrinsic regulation of its binding to microtubules.

Scarborough EA, Davis TN, Asbury CL.

Elife. 2019 May 2;8. pii: e44489. doi: 10.7554/eLife.44489.

3.

Proxl (Protein Cross-Linking Database): A Public Server, QC Tools, and Other Major Updates.

Riffle M, Jaschob D, Zelter A, Davis TN.

J Proteome Res. 2019 Feb 1;18(2):759-764. doi: 10.1021/acs.jproteome.8b00726. Epub 2018 Dec 19.

PMID:
30525651
4.

A Bifunctional Role for the UHRF1 UBL Domain in the Control of Hemi-methylated DNA-Dependent Histone Ubiquitylation.

DaRosa PA, Harrison JS, Zelter A, Davis TN, Brzovic P, Kuhlman B, Klevit RE.

Mol Cell. 2018 Nov 15;72(4):753-765.e6. doi: 10.1016/j.molcel.2018.09.029. Epub 2018 Nov 1.

PMID:
30392931
5.

A Review of the Literature on the Functional Analysis of Inappropriate Mealtime Behavior.

Hodges A, Davis TN, Kirkpatrick M.

Behav Modif. 2018 Aug 22:145445518794368. doi: 10.1177/0145445518794368. [Epub ahead of print]

PMID:
30132340
6.

Novel phosphorylation states of the yeast spindle pole body.

Fong KK, Zelter A, Graczyk B, Hoyt JM, Riffle M, Johnson R, MacCoss MJ, Davis TN.

Biol Open. 2018 Oct 8;7(10). pii: bio033647. doi: 10.1242/bio.033647.

7.

Introduction to Special Issue Part 2 on Interventions to Reduce Challenging Behavior Among Individuals With Autism Spectrum Disorder.

Davis TN, Rispoli M.

Behav Modif. 2018 Jul;42(4):471. doi: 10.1177/0145445517753196. No abstract available.

PMID:
29862850
8.

Introduction to the Special Issue: Interventions to Reduce Challenging Behavior Among Individuals With Autism Spectrum Disorder.

Davis TN, Rispoli M.

Behav Modif. 2018 May;42(3):307-313. doi: 10.1177/0145445518763851.

PMID:
29621899
9.

Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore-microtubule attachments.

Helgeson LA, Zelter A, Riffle M, MacCoss MJ, Asbury CL, Davis TN.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2740-2745. doi: 10.1073/pnas.1718553115. Epub 2018 Feb 27.

10.

Identification of Wiskott-Aldrich syndrome protein (WASP) binding sites on the branched actin filament nucleator Arp2/3 complex.

Luan Q, Zelter A, MacCoss MJ, Davis TN, Nolen BJ.

Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):E1409-E1418. doi: 10.1073/pnas.1716622115. Epub 2018 Jan 31.

11.

Introduction to the Special Issue: Interventions to Reduce Challenging Behavior Among Individuals With Autism Spectrum Disorder.

Davis TN, Rispoli M.

Behav Modif. 2018 Jan 1:145445518755349. doi: 10.1177/0145445518755349. [Epub ahead of print]

PMID:
29374962
12.

Differential Reinforcement of Other Behaviors to Treat Challenging Behaviors Among Children With Autism: A Systematic and Quality Review.

Weston R, Hodges A, Davis TN.

Behav Modif. 2018 Jul;42(4):584-609. doi: 10.1177/0145445517743487. Epub 2017 Nov 24.

PMID:
29169240
13.

The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling.

Viswanath S, Bonomi M, Kim SJ, Klenchin VA, Taylor KC, Yabut KC, Umbreit NT, Van Epps HA, Meehl J, Jones MH, Russel D, Velazquez-Muriel JA, Winey M, Rayment I, Davis TN, Sali A, Muller EG.

Mol Biol Cell. 2017 Nov 7;28(23):3298-3314. doi: 10.1091/mbc.E17-06-0397. Epub 2017 Aug 16.

14.

Direct measurement of the strength of microtubule attachment to yeast centrosomes.

Fong KK, Sarangapani KK, Yusko EC, Riffle M, Llauró A, Graczyk B, Davis TN, Asbury CL.

Mol Biol Cell. 2017 Jul 7;28(14):1853-1861. doi: 10.1091/mbc.E17-01-0034. Epub 2017 Mar 22.

15.

The Ndc80 complex bridges two Dam1 complex rings.

Kim JO, Zelter A, Umbreit NT, Bollozos A, Riffle M, Johnson R, MacCoss MJ, Asbury CL, Davis TN.

Elife. 2017 Feb 13;6. pii: e21069. doi: 10.7554/eLife.21069.

16.

Corrigendum: Design of a hyperstable 60-subunit protein icosahedron.

Hsia Y, Bale JB, Gonen S, Shi D, Sheffler W, Fong KK, Nattermann U, Xu C, Huang PS, Ravichandran R, Yi S, Davis TN, Gonen T, King NP, Baker D.

Nature. 2016 Dec 1;540(7631):150. doi: 10.1038/nature20108. Epub 2016 Oct 19. No abstract available.

PMID:
27760110
17.

Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer.

Berger S, Procko E, Margineantu D, Lee EF, Shen BW, Zelter A, Silva DA, Chawla K, Herold MJ, Garnier JM, Johnson R, MacCoss MJ, Lessene G, Davis TN, Stayton PS, Stoddard BL, Fairlie WD, Hockenbery DM, Baker D.

Elife. 2016 Nov 2;5. pii: e20352. doi: 10.7554/eLife.20352.

18.

Analysis of Behavioral Indicators as a Measure of Satiation.

Scalzo R, Davis TN.

Behav Modif. 2017 Mar;41(2):308-322. doi: 10.1177/0145445516673828. Epub 2016 Oct 22.

PMID:
27760808
19.

Design of a hyperstable 60-subunit protein dodecahedron. [corrected].

Hsia Y, Bale JB, Gonen S, Shi D, Sheffler W, Fong KK, Nattermann U, Xu C, Huang PS, Ravichandran R, Yi S, Davis TN, Gonen T, King NP, Baker D.

Nature. 2016 Jul 7;535(7610):136-9. doi: 10.1038/nature18010. Epub 2016 Jun 15. Erratum in: Nature. 2016 Dec 1;540(7631):150.

20.

ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data.

Riffle M, Jaschob D, Zelter A, Davis TN.

J Proteome Res. 2016 Aug 5;15(8):2863-70. doi: 10.1021/acs.jproteome.6b00274. Epub 2016 Jun 24.

21.

Higher-order oligomerization of Spc110p drives γ-tubulin ring complex assembly.

Lyon AS, Morin G, Moritz M, Yabut KC, Vojnar T, Zelter A, Muller E, Davis TN, Agard DA.

Mol Biol Cell. 2016 Jul 15;27(14):2245-58. doi: 10.1091/mbc.E16-02-0072. Epub 2016 May 25.

22.

Purification of Fluorescently Labeled Saccharomyces cerevisiae Spindle Pole Bodies.

Fong KK, Graczyk B, Davis TN.

Methods Mol Biol. 2016;1413:189-195. doi: 10.1007/978-1-4939-3542-0_12.

23.

Single-Molecule Total Internal Reflection Fluorescence Microscopy.

Kudalkar EM, Davis TN, Asbury CL.

Cold Spring Harb Protoc. 2016 May 2;2016(5). doi: 10.1101/pdb.top077800.

24.

Preparation of Reactions for Imaging with Total Internal Reflection Fluorescence Microscopy.

Kudalkar EM, Davis TN, Asbury CL.

Cold Spring Harb Protoc. 2016 May 2;2016(5). doi: 10.1101/pdb.prot085563.

25.

Coverslip Cleaning and Functionalization for Total Internal Reflection Fluorescence Microscopy.

Kudalkar EM, Deng Y, Davis TN, Asbury CL.

Cold Spring Harb Protoc. 2016 May 2;2016(5). doi: 10.1101/pdb.prot085548.

26.

Structure of γ-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure.

Greenberg CH, Kollman J, Zelter A, Johnson R, MacCoss MJ, Davis TN, Agard DA, Sali A.

J Struct Biol. 2016 Jun;194(3):303-10. doi: 10.1016/j.jsb.2016.03.006. Epub 2016 Mar 8.

27.

The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling.

Zelter A, Bonomi M, Kim JO, Umbreit NT, Hoopmann MR, Johnson R, Riffle M, Jaschob D, MacCoss MJ, Moritz RL, Davis TN.

Nat Commun. 2015 Nov 12;6:8673. doi: 10.1038/ncomms9673.

28.

Regulation of outer kinetochore Ndc80 complex-based microtubule attachments by the central kinetochore Mis12/MIND complex.

Kudalkar EM, Scarborough EA, Umbreit NT, Zelter A, Gestaut DR, Riffle M, Johnson RS, MacCoss MJ, Asbury CL, Davis TN.

Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):E5583-9. doi: 10.1073/pnas.1513882112. Epub 2015 Oct 1.

29.

Visualization and dissemination of multidimensional proteomics data comparing protein abundance during Caenorhabditis elegans development.

Riffle M, Merrihew GE, Jaschob D, Sharma V, Davis TN, Noble WS, MacCoss MJ.

J Am Soc Mass Spectrom. 2015 Nov;26(11):1827-36. doi: 10.1007/s13361-015-1193-z. Epub 2015 Jul 2.

30.

A Review and Treatment Selection Model for Individuals with Developmental Disabilities Who Engage in Inappropriate Sexual Behavior.

Davis TN, Machalicek W, Scalzo R, Kobylecky A, Campbell V, Pinkelman S, Chan JM, Sigafoos J.

Behav Anal Pract. 2015 Jun 4;9(4):389-402. eCollection 2016 Dec.

31.

Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences.

Jaschob D, Davis TN, Riffle M.

BMC Res Notes. 2015 Mar 7;8:70. doi: 10.1186/s13104-015-1009-z.

32.

Kojak: efficient analysis of chemically cross-linked protein complexes.

Hoopmann MR, Zelter A, Johnson RS, Riffle M, MacCoss MJ, Davis TN, Moritz RL.

J Proteome Res. 2015 May 1;14(5):2190-8. doi: 10.1021/pr501321h. Epub 2015 Apr 15.

33.

Evaluation of interventions to reduce multiply controlled vocal stereotypy.

Scalzo R, Henry K, Davis TN, Amos K, Zoch T, Turchan S, Wagner T.

Behav Modif. 2015 Jul;39(4):496-509. doi: 10.1177/0145445515573986. Epub 2015 Mar 1.

PMID:
25733663
34.

Ring closure activates yeast γTuRC for species-specific microtubule nucleation.

Kollman JM, Greenberg CH, Li S, Moritz M, Zelter A, Fong KK, Fernandez JJ, Sali A, Kilmartin J, Davis TN, Agard DA.

Nat Struct Mol Biol. 2015 Feb;22(2):132-7. doi: 10.1038/nsmb.2953. Epub 2015 Jan 19.

35.

In-line separation by capillary electrophoresis prior to analysis by top-down mass spectrometry enables sensitive characterization of protein complexes.

Han X, Wang Y, Aslanian A, Fonslow B, Graczyk B, Davis TN, Yates JR 3rd.

J Proteome Res. 2014 Dec 5;13(12):6078-86. doi: 10.1021/pr500971h. Epub 2014 Nov 21.

36.

Kinetochores require oligomerization of Dam1 complex to maintain microtubule attachments against tension and promote biorientation.

Umbreit NT, Miller MP, Tien JF, Ortolá JC, Gui L, Lee KK, Biggins S, Asbury CL, Davis TN.

Nat Commun. 2014 Sep 19;5:4951. doi: 10.1038/ncomms5951.

37.

Kinetochore biorientation in Saccharomyces cerevisiae requires a tightly folded conformation of the Ndc80 complex.

Tien JF, Umbreit NT, Zelter A, Riffle M, Hoopmann MR, Johnson RS, Fonslow BR, Yates JR 3rd, MacCoss MJ, Moritz RL, Asbury CL, Davis TN.

Genetics. 2014 Dec;198(4):1483-93. doi: 10.1534/genetics.114.167775. Epub 2014 Sep 16.

38.

Determining protein complex structures based on a Bayesian model of in vivo Förster resonance energy transfer (FRET) data.

Bonomi M, Pellarin R, Kim SJ, Russel D, Sundin BA, Riffle M, Jaschob D, Ramsden R, Davis TN, Muller EG, Sali A.

Mol Cell Proteomics. 2014 Nov;13(11):2812-23. doi: 10.1074/mcp.M114.040824. Epub 2014 Aug 19.

39.
40.

Effects associated with on- and off-label stimulant treatment of core autism and ADHD symptoms exhibited by children with autism spectrum disorder.

Barnard-Brak L, Davis TN, Schmidt M, Richman DM.

Dev Neurorehabil. 2016;19(1):46-53. doi: 10.3109/17518423.2014.904949. Epub 2014 Apr 16.

PMID:
24739141
41.

Coupling unbiased mutagenesis to high-throughput DNA sequencing uncovers functional domains in the Ndc80 kinetochore protein of Saccharomyces cerevisiae.

Tien JF, Fong KK, Umbreit NT, Payen C, Zelter A, Asbury CL, Dunham MJ, Davis TN.

Genetics. 2013 Sep;195(1):159-70. doi: 10.1534/genetics.113.152728. Epub 2013 Jul 5.

42.

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast.

Skelly DA, Merrihew GE, Riffle M, Connelly CF, Kerr EO, Johansson M, Jaschob D, Graczyk B, Shulman NJ, Wakefield J, Cooper SJ, Fields S, Noble WS, Muller EG, Davis TN, Dunham MJ, Maccoss MJ, Akey JM.

Genome Res. 2013 Sep;23(9):1496-504. doi: 10.1101/gr.155762.113. Epub 2013 May 29.

43.

Reduction of automatically maintained self-injurious behavior utilizing noncontingent matched stimuli.

Davis TN, Dacus S, Strickland E, Machalicek W, Coviello L.

Dev Neurorehabil. 2013 Jun;16(3):166-71. doi: 10.3109/17518423.2013.766819. Epub 2013 Mar 11.

PMID:
23477292
44.

Vascular endothelial growth factor C is increased in endometrium and promotes endothelial functions, vascular permeability and angiogenesis and growth of endometriosis.

Xu H, Zhang T, Man GC, May KE, Becker CM, Davis TN, Kung AL, Birsner AE, D'Amato RJ, Wong AW, Wang CC.

Angiogenesis. 2013 Jul;16(3):541-51. doi: 10.1007/s10456-013-9333-1. Epub 2013 Jan 19.

PMID:
23334337
45.

The effects of a weighted vest on aggressive and self-injurious behavior in a child with autism.

Davis TN, Dacus S, Strickland E, Copeland D, Chan JM, Blenden K, Scalzo R, Osborn S, Wells K, Christian K.

Dev Neurorehabil. 2013 Jun;16(3):210-5. doi: 10.3109/17518423.2012.753955. Epub 2013 Jan 2.

PMID:
23278839
46.

Using iPods(®) and iPads(®) in teaching programs for individuals with developmental disabilities: a systematic review.

Kagohara DM, van der Meer L, Ramdoss S, O'Reilly MF, Lancioni GE, Davis TN, Rispoli M, Lang R, Marschik PB, Sutherland D, Green VA, Sigafoos J.

Res Dev Disabil. 2013 Jan;34(1):147-56. doi: 10.1016/j.ridd.2012.07.027. Epub 2012 Aug 30. Review.

PMID:
22940168
47.

The Ndc80 kinetochore complex directly modulates microtubule dynamics.

Umbreit NT, Gestaut DR, Tien JF, Vollmar BS, Gonen T, Asbury CL, Davis TN.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16113-8. doi: 10.1073/pnas.1209615109. Epub 2012 Aug 20.

48.

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress.

Tkach JM, Yimit A, Lee AY, Riffle M, Costanzo M, Jaschob D, Hendry JA, Ou J, Moffat J, Boone C, Davis TN, Nislow C, Brown GW.

Nat Cell Biol. 2012 Sep;14(9):966-76. doi: 10.1038/ncb2549. Epub 2012 Jul 29.

49.

Mitosis puts sisters in a strained relationship: force generation at the kinetochore.

Umbreit NT, Davis TN.

Exp Cell Res. 2012 Jul 15;318(12):1361-6. doi: 10.1016/j.yexcr.2012.04.008. Epub 2012 Apr 30. Review.

50.

The Proteome Folding Project: proteome-scale prediction of structure and function.

Drew K, Winters P, Butterfoss GL, Berstis V, Uplinger K, Armstrong J, Riffle M, Schweighofer E, Bovermann B, Goodlett DR, Davis TN, Shasha D, Malmström L, Bonneau R.

Genome Res. 2011 Nov;21(11):1981-94. doi: 10.1101/gr.121475.111. Epub 2011 Aug 8.

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