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Cytosine and adenine base editing of the brain, liver, retina, heart and skeletal muscle of mice via adeno-associated viruses.

Levy JM, Yeh WH, Pendse N, Davis JR, Hennessey E, Butcher R, Koblan LW, Comander J, Liu Q, Liu DR.

Nat Biomed Eng. 2020 Jan;4(1):97-110. doi: 10.1038/s41551-019-0501-5. Epub 2020 Jan 14.


Analysis of Complex Microbial Samples Using High Definition Mapping.

Oliver JS, Bready B, Catalano AP, Davis JR, Kaiser MD, Sage JM.

J Biomol Tech. 2019 Dec;30(Suppl):S5.


Persistent and polarized global actin flow is essential for directionality during cell migration.

Yolland L, Burki M, Marcotti S, Luchici A, Kenny FN, Davis JR, Serna-Morales E, Müller J, Sixt M, Davidson A, Wood W, Schumacher LJ, Endres RG, Miodownik M, Stramer BM.

Nat Cell Biol. 2019 Nov;21(11):1370-1381. doi: 10.1038/s41556-019-0411-5. Epub 2019 Nov 4.


Search-and-replace genome editing without double-strand breaks or donor DNA.

Anzalone AV, Randolph PB, Davis JR, Sousa AA, Koblan LW, Levy JM, Chen PJ, Wilson C, Newby GA, Raguram A, Liu DR.

Nature. 2019 Dec;576(7785):149-157. doi: 10.1038/s41586-019-1711-4. Epub 2019 Oct 21.


Hippo signalling during development.

Davis JR, Tapon N.

Development. 2019 Sep 16;146(18). pii: dev167106. doi: 10.1242/dev.167106. Review.


Power-Injection Injury in a Patient with Ehlers-Danlos Syndrome.

Davis JR, Kiang SC, Dudley KM, Patel ST, Smith JC, Tomihama RT.

J Vasc Interv Radiol. 2019 Oct;30(10):1685-1687. doi: 10.1016/j.jvir.2019.04.005. Epub 2019 Jul 3. No abstract available.


Disentangling juxtacrine from paracrine signalling in dynamic tissue.

Momiji H, Hassall KL, Featherstone K, McNamara AV, Patist AL, Spiller DG, Christian HC, White MRH, Davis JRE, Finkenstädt BF, Rand DA.

PLoS Comput Biol. 2019 Jun 13;15(6):e1007030. doi: 10.1371/journal.pcbi.1007030. eCollection 2019 Jun.


Identification of rare-disease genes using blood transcriptome sequencing and large control cohorts.

Frésard L, Smail C, Ferraro NM, Teran NA, Li X, Smith KS, Bonner D, Kernohan KD, Marwaha S, Zappala Z, Balliu B, Davis JR, Liu B, Prybol CJ, Kohler JN, Zastrow DB, Reuter CM, Fisk DG, Grove ME, Davidson JM, Hartley T, Joshi R, Strober BJ, Utiramerur S; Undiagnosed Diseases Network; Care4Rare Canada Consortium, Lind L, Ingelsson E, Battle A, Bejerano G, Bernstein JA, Ashley EA, Boycott KM, Merker JD, Wheeler MT, Montgomery SB.

Nat Med. 2019 Jun;25(6):911-919. doi: 10.1038/s41591-019-0457-8. Epub 2019 Jun 3.


EGFP-EGF1-conjugated poly(lactic-co-glycolic acid) nanoparticles, a new diagnostic tool and drug carrier for atherosclerosis.

Wu Z, Chen C, Zhang B, Tang L, Shi W, Liao D, Di G, Davis JR, Wang H.

Int J Nanomedicine. 2019 Apr 11;14:2609-2618. doi: 10.2147/IJN.S199695. eCollection 2019.


Use of a molecular classifier to identify usual interstitial pneumonia in conventional transbronchial lung biopsy samples: a prospective validation study.

Raghu G, Flaherty KR, Lederer DJ, Lynch DA, Colby TV, Myers JL, Groshong SD, Larsen BT, Chung JH, Steele MP, Benzaquen S, Calero K, Case AH, Criner GJ, Nathan SD, Rai NS, Ramaswamy M, Hagmeyer L, Davis JR, Gauhar UA, Pankratz DG, Choi Y, Huang J, Walsh PS, Neville H, Lofaro LR, Barth NM, Kennedy GC, Brown KK, Martinez FJ.

Lancet Respir Med. 2019 Jun;7(6):487-496. doi: 10.1016/S2213-2600(19)30059-1. Epub 2019 Apr 1.


Rapid Relief: Thyroidectomy is a Quicker Cure than Radioactive Iodine Ablation (RAI) in Patients with Hyperthyroidism.

Davis JR, Dackiw AP, Holt SA, Nwariaku FE, Oltmann SC.

World J Surg. 2019 Mar;43(3):812-817. doi: 10.1007/s00268-018-4864-7.


New and emerging therapies for acute myeloid leukaemia.

Davis JR, Benjamin DJ, Jonas BA.

J Investig Med. 2018 Dec;66(8):1088-1095. doi: 10.1136/jim-2018-000807. Epub 2018 Aug 19. Review.


Apical and Basal Matrix Remodeling Control Epithelial Morphogenesis.

Diaz-de-la-Loza MD, Ray RP, Ganguly PS, Alt S, Davis JR, Hoppe A, Tapon N, Salbreux G, Thompson BJ.

Dev Cell. 2018 Jul 2;46(1):23-39.e5. doi: 10.1016/j.devcel.2018.06.006.


Dynamic Consequences of Mutation of Tryptophan 215 in Thrombin.

Peacock RB, Davis JR, Markwick PRL, Komives EA.

Biochemistry. 2018 May 8;57(18):2694-2703. doi: 10.1021/acs.biochem.8b00262. Epub 2018 Apr 19.


The Role of Systemic Therapy in the Management of Stage I Large Cell Neuroendocrine Carcinoma of the Lung.

Kujtan L, Muthukumar V, Kennedy KF, Davis JR, Masood A, Subramanian J.

J Thorac Oncol. 2018 May;13(5):707-714. doi: 10.1016/j.jtho.2018.01.019. Epub 2018 Jan 31.


Characterizing patients with asthma who received Global Initiative for Asthma steps 4-5 therapy and managed in a specialty care setting.

Stone B, Davis JR, Trudo F, Schiffman B, Alzola C, Brown D, Fox KM.

Allergy Asthma Proc. 2018 Jan 1;39(1):27-35. doi: 10.2500/aap.2018.39.4094.


Instituting Ultrasound-Guided FNA for Thyroid Nodules into a General Surgery Residency Program: What We Learned.

Davis JR, Hale AL, Ewing JA, Lokey JS.

J Surg Educ. 2018 May - Jun;75(3):594-600. doi: 10.1016/j.jsurg.2017.09.031. Epub 2017 Nov 23.


Asymmetry between Activation and Deactivation during a Transcriptional Pulse.

Dunham LSS, Momiji H, Harper CV, Downton PJ, Hey K, McNamara A, Featherstone K, Spiller DG, Rand DA, Finkenstädt B, White MRH, Davis JRE.

Cell Syst. 2017 Dec 27;5(6):646-653.e5. doi: 10.1016/j.cels.2017.10.013. Epub 2017 Nov 15.


Predictors for chemotherapy in early stage small cell lung carcinoma (SCLC): A National Cancer Database (NCDB) analysis.

Ahmed Z, Grover P, Kennedy KF, Masood A, Davis JR, Subramanian J.

Lung Cancer. 2017 Nov;113:85-87. doi: 10.1016/j.lungcan.2017.09.004. Epub 2017 Sep 13. No abstract available.


The impact of rare variation on gene expression across tissues.

Li X, Kim Y, Tsang EK, Davis JR, Damani FN, Chiang C, Hess GT, Zappala Z, Strober BJ, Scott AJ, Li A, Ganna A, Bassik MC, Merker JD; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working Group; Statistical Methods groups—Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site—NDRI; Biospecimen Collection Source Site—RPCI; Biospecimen Core Resource—VARI; Brain Bank Repository—University of Miami Brain Endowment Bank; Leidos Biomedical—Project Management; ELSI Study; Genome Browser Data Integration &Visualization—EBI; Genome Browser Data Integration &Visualization—UCSC Genomics Institute, University of California Santa Cruz, Hall IM, Battle A, Montgomery SB.

Nature. 2017 Oct 11;550(7675):239-243. doi: 10.1038/nature24267.


Incorporation of Biological Knowledge Into the Study of Gene-Environment Interactions.

Ritchie MD, Davis JR, Aschard H, Battle A, Conti D, Du M, Eskin E, Fallin MD, Hsu L, Kraft P, Moore JH, Pierce BL, Bien SA, Thomas DC, Wei P, Montgomery SB.

Am J Epidemiol. 2017 Oct 1;186(7):771-777. doi: 10.1093/aje/kwx229.


FIRE: functional inference of genetic variants that regulate gene expression.

Ioannidis NM, Davis JR, DeGorter MK, Larson NB, McDonnell SK, French AJ, Battle AJ, Hastie TJ, Thibodeau SN, Montgomery SB, Bustamante CD, Sieh W, Whittemore AS.

Bioinformatics. 2017 Dec 15;33(24):3895-3901. doi: 10.1093/bioinformatics/btx534.


Bioprosthetic Valve Fracture to Facilitate Transcatheter Valve-in-Valve Implantation.

Allen KB, Chhatriwalla AK, Cohen DJ, Saxon JT, Aggarwal S, Hart A, Baron S, Davis JR, Pak AF, Dvir D, Borkon AM.

Ann Thorac Surg. 2017 Nov;104(5):1501-1508. doi: 10.1016/j.athoracsur.2017.04.007. Epub 2017 Jun 29.


Impact of Nonadherence to Inhaled Corticosteroid/LABA Therapy on COPD Exacerbation Rates and Healthcare Costs in a Commercially Insured US Population.

Davis JR, Wu B, Kern DM, Tunceli O, Fox KM, Horton J, Legg RF, Trudo F.

Am Health Drug Benefits. 2017 Apr;10(2):92-102.


Communication with young people in paediatric and adult endocrine consultations: an intervention development and feasibility study.

Downing J, Gleeson H, Clayton PE, Davis JRE, Dimitri P, Wales J, Young B, Callery P.

BMC Endocr Disord. 2017 Jun 15;17(1):33. doi: 10.1186/s12902-017-0182-6.


No Difference in Mood and Quality of Life in DHEA-S Deficient Adults with Addison's Disease vs. Type 2 Diabetes Patients with Normal DHEA-S Levels: Implications for Management of These Conditions.

Heald AH, Walther A, Davis JRE, Moreno GYC, Kane J, Livingston M, Fowler HL.

Front Psychol. 2017 May 11;8:764. doi: 10.3389/fpsyg.2017.00764. eCollection 2017.


Allele-specific expression reveals interactions between genetic variation and environment.

Knowles DA, Davis JR, Edgington H, Raj A, Favé MJ, Zhu X, Potash JB, Weissman MM, Shi J, Levinson DF, Awadalla P, Mostafavi S, Montgomery SB, Battle A.

Nat Methods. 2017 Jul;14(7):699-702. doi: 10.1038/nmeth.4298. Epub 2017 May 22.


Disparities in the Management of Patients With Stage I Small Cell Lung Carcinoma (SCLC): A Surveillance, Epidemiology and End Results (SEER) Analysis.

Ahmed Z, Kujtan L, Kennedy KF, Davis JR, Subramanian J.

Clin Lung Cancer. 2017 Sep;18(5):e315-e325. doi: 10.1016/j.cllc.2017.03.003. Epub 2017 Mar 30.


Population- and individual-specific regulatory variation in Sardinia.

Pala M, Zappala Z, Marongiu M, Li X, Davis JR, Cusano R, Crobu F, Kukurba KR, Gloudemans MJ, Reinier F, Berutti R, Piras MG, Mulas A, Zoledziewska M, Marongiu M, Sorokin EP, Hess GT, Smith KS, Busonero F, Maschio A, Steri M, Sidore C, Sanna S, Fiorillo E, Bassik MC, Sawcer SJ, Battle A, Novembre J, Jones C, Angius A, Abecasis GR, Schlessinger D, Cucca F, Montgomery SB.

Nat Genet. 2017 May;49(5):700-707. doi: 10.1038/ng.3840. Epub 2017 Apr 10.


The impact of structural variation on human gene expression.

Chiang C, Scott AJ, Davis JR, Tsang EK, Li X, Kim Y, Hadzic T, Damani FN, Ganel L; GTEx Consortium, Montgomery SB, Battle A, Conrad DF, Hall IM.

Nat Genet. 2017 May;49(5):692-699. doi: 10.1038/ng.3834. Epub 2017 Apr 3.


Dexmedetomidine Attenuates Lipopolysaccharide Induced MCP-1 Expression in Primary Astrocyte.

Liu H, Davis JR, Wu ZL, Faez Abdelgawad A.

Biomed Res Int. 2017;2017:6352159. doi: 10.1155/2017/6352159. Epub 2017 Feb 14.


Interparietal Hernia Complicating Retromuscular Ventral Hernia Repair.

Davis JR, Villarreal JE, Cobb WS, Carbonell AM, Warren JA.

Am Surg. 2016 Jul;82(7):658-9. No abstract available.


Benefits of multi-session balance and gait training with multi-modal biofeedback in healthy older adults.

Lim SB, Horslen BC, Davis JR, Allum JH, Carpenter MG.

Gait Posture. 2016 Jun;47:10-7. doi: 10.1016/j.gaitpost.2016.03.017. Epub 2016 Mar 30.


Impact of the X Chromosome and sex on regulatory variation.

Kukurba KR, Parsana P, Balliu B, Smith KS, Zappala Z, Knowles DA, Favé MJ, Davis JR, Li X, Zhu X, Potash JB, Weissman MM, Shi J, Kundaje A, Levinson DF, Awadalla P, Mostafavi S, Battle A, Montgomery SB.

Genome Res. 2016 Jun;26(6):768-77. doi: 10.1101/gr.197897.115. Epub 2016 Apr 21.


Why publish case reports in Physiological Reports.

Kleyman TR, Davis JR.

Physiol Rep. 2016 May;4(9). pii: e12784. doi: 10.14814/phy2.12784. No abstract available.


Electrochemical Ion-Exchange Regeneration and Fluidized Bed Crystallization for Zero-Liquid-Discharge Water Softening.

Chen Y, Davis JR, Nguyen CH, Baygents JC, Farrell J.

Environ Sci Technol. 2016 Jun 7;50(11):5900-7. doi: 10.1021/acs.est.5b05606. Epub 2016 May 17.


Health Care Utilization and Costs After Initiating Budesonide/Formoterol Combination or Fluticasone/Salmeterol Combination Among COPD Patients New to ICS/LABA Treatment.

Davis JR, Kern DM, Williams SA, Tunceli O, Wu B, Hollis S, Strange C, Trudo F.

J Manag Care Spec Pharm. 2016 Mar;22(3):293-304. doi: 10.18553/jmcp.2016.22.3.293.


The Descending Thoracic Aorta: Forgotten Vascular Access for Endovascular Device Delivery.

Allen KB, Borkon AM, Aggarwal S, Davis JR, Laster S, Cohen DJ, Chhatriwalla AK, Hart A, Baron SJ.

Innovations (Phila). 2016 Mar-Apr;11(2):138-41. doi: 10.1097/IMI.0000000000000225.


Spatially coordinated dynamic gene transcription in living pituitary tissue.

Featherstone K, Hey K, Momiji H, McNamara AV, Patist AL, Woodburn J, Spiller DG, Christian HC, McNeilly AS, Mullins JJ, Finkenstädt BF, Rand DA, White MR, Davis JR.

Elife. 2016 Feb 1;5:e08494. doi: 10.7554/eLife.08494.


An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants.

Davis JR, Fresard L, Knowles DA, Pala M, Bustamante CD, Battle A, Montgomery SB.

Am J Hum Genet. 2016 Jan 7;98(1):216-24. doi: 10.1016/j.ajhg.2015.11.021. Epub 2015 Dec 31.


Role of Estrogen Response Element in the Human Prolactin Gene: Transcriptional Response and Timing.

McNamara AV, Adamson AD, Dunham LS, Semprini S, Spiller DG, McNeilly AS, Mullins JJ, Davis JR, White MR.

Mol Endocrinol. 2016 Feb;30(2):189-200. doi: 10.1210/me.2015-1186. Epub 2015 Dec 21.


Comparative effectiveness of budesonide/formoterol combination and tiotropium bromide among COPD patients new to these controller treatments.

Trudo F, Kern DM, Davis JR, Tunceli O, Zhou S, Graham EL, Strange C, Williams SA.

Int J Chron Obstruct Pulmon Dis. 2015 Sep 28;10:2055-66. doi: 10.2147/COPD.S90658. eCollection 2015.


Binary Switching of Calendar Cells in the Pituitary Defines the Phase of the Circannual Cycle in Mammals.

Wood SH, Christian HC, Miedzinska K, Saer BR, Johnson M, Paton B, Yu L, McNeilly J, Davis JR, McNeilly AS, Burt DW, Loudon AS.

Curr Biol. 2015 Oct 19;25(20):2651-62. doi: 10.1016/j.cub.2015.09.014. Epub 2015 Sep 24.


Recurrent Primary Cardiac Sarcoma Managed With Radical Cardiac Resection and Pneumonectomy.

Xiao K, Allen KB, Borkon AM, Aggarwal S, Davis JR, Stewart J, Pak A, Stuart RS.

Ann Thorac Surg. 2015 Aug;100(2):728-30. doi: 10.1016/j.athoracsur.2014.09.087.


Combined Transcatheter Aortic Valve Replacement and Thoracic Endovascular Aortic Repair Using Transapical Access.

Allen KB, Johnson LM, Borkon AM, Aggarwal S, Davis JR, Cohen DJ, Chhatriwalla AK, Grantham A, Hart A.

Ann Thorac Surg. 2015 Aug;100(2):723-7. doi: 10.1016/j.athoracsur.2014.10.024.


Indeterminate Thyroid Nodule: Knowing What We Do Not Know.

Davis JR, Ewing JA, Hale AL, Lokey JS.

Am Surg. 2015 Jul;81(7):E294-6. No abstract available.


Jet Ski Hydrostatic Perineal Injuries from a Level I Trauma Experience.

Davis JR, Hale AL, Smith DE.

Am Surg. 2015 Jul;81(7):E282-3. No abstract available.


Images in Vascular Medicine. Rapidly progressive arterial aneurysms in a patient with Ehlers-Danlos syndrome.

Safley DM, Laster SB, Schmidt L, Davis JR.

Vasc Med. 2016 Feb;21(1):71-2. doi: 10.1177/1358863X15592965. Epub 2015 Jun 30. No abstract available.


Seeing red: How perceptions of social status and worth influence hostile attributions and endorsement of aggression.

Davis JR, Reyna C.

Br J Soc Psychol. 2015 Dec;54(4):728-47. doi: 10.1111/bjso.12109. Epub 2015 May 14.


A stochastic transcriptional switch model for single cell imaging data.

Hey KL, Momiji H, Featherstone K, Davis JR, White MR, Rand DA, Finkenstädt B.

Biostatistics. 2015 Oct;16(4):655-69. doi: 10.1093/biostatistics/kxv010. Epub 2015 Mar 26.

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