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Elucidation of Hosts, Native Distribution, and Habitat of the Coffee Berry Borer (Hypothenemus hampei) Using Herbaria and Other Museum Collections.

Vega FE, Smith LT, Davies NMJ, Moat J, Góral T, O'Sullivan R, Davis AP.

Front Plant Sci. 2019 Oct 1;10:1188. doi: 10.3389/fpls.2019.01188. eCollection 2019.


From Herniation to Rehabilitation: A Young Woman With Rapidly Progressive Neurological Deficits.

Sharma A, Foutz TJ, Gonzalez-Cuyar LF, Latimer CS, Longstreth WT Jr, Tirschwell DL, Davis AP.

Neurohospitalist. 2019 Oct;9(4):215-221. doi: 10.1177/1941874419832437. Epub 2019 Mar 4. No abstract available.


Evaluation of an enhanced treatment media and permeable pavement base to remove stormwater nitrogen, phosphorus, and metals under simulated rainfall.

Ostrom TK, Davis AP.

Water Res. 2019 Dec 1;166:115071. doi: 10.1016/j.watres.2019.115071. Epub 2019 Sep 9.


Impact of vegetation selection on nitrogen and phosphorus processing in bioretention containers.

Muerdter CP, Smith DJ, Davis AP.

Water Environ Res. 2019 Aug 6. doi: 10.1002/wer.1195. [Epub ahead of print]


Polychlorinated biphenyls in stormwater sediments: Relationships with land use and particle characteristics.

Cao S, Capozzi SL, Kjellerup BV, Davis AP.

Water Res. 2019 Oct 15;163:114865. doi: 10.1016/j.watres.2019.114865. Epub 2019 Jul 16.


Repositioning Chloride Transmembrane Transporters: Transport of Organic Ion Pairs.

Grauwels G, Valkenier H, Davis AP, Jabin I, Bartik K.

Angew Chem Int Ed Engl. 2019 May 20;58(21):6921-6925. doi: 10.1002/anie.201900818. Epub 2019 Apr 12.


Updated Prevalence of mcr-Like Genes among Escherichia coli and Klebsiella pneumoniae in the SENTRY Program and Characterization of mcr-1.11 Variant.

Deshpande LM, Hubler C, Davis AP, Castanheira M.

Antimicrob Agents Chemother. 2019 Mar 27;63(4). pii: e02450-18. doi: 10.1128/AAC.02450-18. Print 2019 Apr. No abstract available.


Pore-forming small molecules offer a promising way to tackle cystic fibrosis.

Sheppard DN, Davis AP.

Nature. 2019 Mar;567(7748):315-317. doi: 10.1038/d41586-019-00781-y. No abstract available.


High extinction risk for wild coffee species and implications for coffee sector sustainability.

Davis AP, Chadburn H, Moat J, O'Sullivan R, Hargreaves S, Nic Lughadha E.

Sci Adv. 2019 Jan 16;5(1):eaav3473. doi: 10.1126/sciadv.aav3473. eCollection 2019 Jan.


Enset in Ethiopia: a poorly characterized but resilient starch staple.

Borrell JS, Biswas MK, Goodwin M, Blomme G, Schwarzacher T, Heslop-Harrison JSP, Wendawek AM, Berhanu A, Kallow S, Janssens S, Molla EL, Davis AP, Woldeyes F, Willis K, Demissew S, Wilkin P.

Ann Bot. 2019 May 20;123(5):747-766. doi: 10.1093/aob/mcy214.


Ettringite and monosulfate formation to reduce alkalinity in reactions of alum-based water treatment residual with steel slag.

Özkök E, Davis AP, Aydilek AH.

Waste Manag. 2019 Feb 1;84:1-12. doi: 10.1016/j.wasman.2018.11.018. Epub 2018 Nov 17.


Understanding urban stormwater denitrification in bioretention internal water storage zones.

Igielski S, Kjellerup BV, Davis AP.

Water Environ Res. 2019 Jan;91(1):32-44. doi: 10.2175/106143017X15131012188024.


In vitro activity of Plazomicin against Enterobacteriaceae isolates carrying genes encoding aminoglycoside-modifying enzymes most common in US Census divisions.

Castanheira M, Davis AP, Serio AW, Krause KM, Mendes RE.

Diagn Microbiol Infect Dis. 2019 May;94(1):73-77. doi: 10.1016/j.diagmicrobio.2018.10.023. Epub 2018 Dec 5.


Least concern to endangered: Applying climate change projections profoundly influences the extinction risk assessment for wild Arabica coffee.

Moat J, Gole TW, Davis AP.

Glob Chang Biol. 2019 Feb;25(2):390-403. doi: 10.1111/gcb.14341. Epub 2019 Jan 16.


The use and misuse of herbarium specimens in evaluating plant extinction risks.

Nic Lughadha E, Walker BE, Canteiro C, Chadburn H, Davis AP, Hargreaves S, Lucas EJ, Schuiteman A, Williams E, Bachman SP, Baines D, Barker A, Budden AP, Carretero J, Clarkson JJ, Roberts A, Rivers MC.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 19;374(1763). pii: 20170402. doi: 10.1098/rstb.2017.0402. Review.


A biomimetic receptor for glucose.

Tromans RA, Carter TS, Chabanne L, Crump MP, Li H, Matlock JV, Orchard MG, Davis AP.

Nat Chem. 2019 Jan;11(1):52-56. doi: 10.1038/s41557-018-0155-z. Epub 2018 Nov 12.


Aminoglycoside-modifying enzyme and 16S ribosomal RNA methyltransferase genes among a global collection of Gram-negative isolates.

Costello SE, Deshpande LM, Davis AP, Mendes RE, Castanheira M.

J Glob Antimicrob Resist. 2019 Mar;16:278-285. doi: 10.1016/j.jgar.2018.10.020. Epub 2018 Oct 30.


Analyses of a Ceftazidime-Avibactam-Resistant Citrobacter freundii Isolate Carrying bla KPC-2 Reveals a Heterogenous Population and Reversible Genotype.

Castanheira M, Arends SJR, Davis AP, Woosley LN, Bhalodi AA, MacVane SH.

mSphere. 2018 Sep 26;3(5). pii: e00408-18. doi: 10.1128/mSphere.00408-18.


The Comparative Toxicogenomics Database: update 2019.

Davis AP, Grondin CJ, Johnson RJ, Sciaky D, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ.

Nucleic Acids Res. 2019 Jan 8;47(D1):D948-D954. doi: 10.1093/nar/gky868.


The search for the elusive Bing sign.

Davis AP, Wettstein A, Swanson PD, Longstreth WT Jr.

Neurology. 2018 Aug 21;91(8):354-356. doi: 10.1212/WNL.0000000000006032. No abstract available.


Maltodextrin recognition by a macrocyclic synthetic lectin.

Stewart P, Renney CM, Mooibroek TJ, Ferheen S, Davis AP.

Chem Commun (Camb). 2018 Aug 11;54(62):8649-8652. doi: 10.1039/c8cc05074k. Epub 2018 Jul 19.


In Vitro Activity of Plazomicin against Gram-Negative and Gram-Positive Isolates Collected from U.S. Hospitals and Comparative Activities of Aminoglycosides against Carbapenem-Resistant Enterobacteriaceae and Isolates Carrying Carbapenemase Genes.

Castanheira M, Davis AP, Mendes RE, Serio AW, Krause KM, Flamm RK.

Antimicrob Agents Chemother. 2018 Jul 27;62(8). pii: e00313-18. doi: 10.1128/AAC.00313-18. Print 2018 Aug.


Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pathways.

Davis AP, Wiegers TC, Wiegers J, Johnson RJ, Sciaky D, Grondin CJ, Mattingly CJ.

Toxicol Sci. 2018 Sep 1;165(1):145-156. doi: 10.1093/toxsci/kfy131.


Anion Recognition by a Bioactive Diureidodecalin Anionophore: Solid-State, Solution, and Computational Studies.

Jurček O, Valkenier H, Puttreddy R, Novák M, Sparkes HA, Marek R, Rissanen K, Davis AP.

Chemistry. 2018 Jun 7;24(32):8178-8185. doi: 10.1002/chem.201800537. Epub 2018 May 14.


Anthracene Bisureas as Powerful and Accessible Anion Carriers.

Dias CM, Valkenier H, Davis AP.

Chemistry. 2018 Apr 20;24(23):6262-6268. doi: 10.1002/chem.201800508. Epub 2018 Apr 6.


Anion transport by ortho-phenylene bis-ureas across cell and vesicle membranes.

Dias CM, Li H, Valkenier H, Karagiannidis LE, Gale PA, Sheppard DN, Davis AP.

Org Biomol Chem. 2018 Feb 14;16(7):1083-1087. doi: 10.1039/c7ob02787g.


Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database.

Grondin CJ, Davis AP, Wiegers TC, Wiegers JA, Mattingly CJ.

Environ Health Perspect. 2018 Jan 18;126(1):014501. doi: 10.1289/EHP2873.


16-O-methylcafestol is present in ground roast Arabica coffees: Implications for authenticity testing.

Gunning Y, Defernez M, Watson AD, Beadman N, Colquhoun IJ, Le Gall G, Philo M, Garwood H, Williamson D, Davis AP, Kemsley EK.

Food Chem. 2018 May 15;248:52-60. doi: 10.1016/j.foodchem.2017.12.034. Epub 2017 Dec 11.


How Well Do Neurologic Symptoms Identify Individuals With Neurosyphilis?

Davis AP, Stern J, Tantalo L, Sahi S, Holte S, Dunaway S, Marra CM.

Clin Infect Dis. 2018 Jan 18;66(3):363-367. doi: 10.1093/cid/cix799.


Case report of transient mcr-1-haboring Escherichia coli with concurrent Staphylococcus aureus bacteremia in Long Beach, California.

Le J, Turner N, Deshpande LM, Davis AP, Castanheira M.

Diagn Microbiol Infect Dis. 2017 Dec;89(4):303-304. doi: 10.1016/j.diagmicrobio.2017.07.005. Epub 2017 Jul 14.


A social ecology of civil conflict: Shifting allegiances in the conflict in Sierra Leone.

Davis AP.

Soc Sci Res. 2017 Sep;67:115-128. doi: 10.1016/j.ssresearch.2017.06.002. Epub 2017 Jun 6.


Monitoring Antifungal Resistance in a Global Collection of Invasive Yeasts and Molds: Application of CLSI Epidemiological Cutoff Values and Whole-Genome Sequencing Analysis for Detection of Azole Resistance in Candida albicans.

Castanheira M, Deshpande LM, Davis AP, Rhomberg PR, Pfaller MA.

Antimicrob Agents Chemother. 2017 Sep 22;61(10). pii: e00906-17. doi: 10.1128/AAC.00906-17. Print 2017 Oct.


Resilience potential of the Ethiopian coffee sector under climate change.

Moat J, Williams J, Baena S, Wilkinson T, Gole TW, Challa ZK, Demissew S, Davis AP.

Nat Plants. 2017 Jun 19;3:17081. doi: 10.1038/nplants.2017.81.


Enantioselective carbohydrate recognition by synthetic lectins in water.

Ríos P, Mooibroek TJ, Carter TS, Williams C, Wilson MR, Crump MP, Davis AP.

Chem Sci. 2017 May 1;8(5):4056-4061. doi: 10.1039/c6sc05399h. Epub 2017 Mar 30.


Ammonium Removal from Synthetic Stormwater using Clinoptilolite and Hydroaluminosilicate Columns.

Khorsha G, Davis AP.

Water Environ Res. 2017 Jun 1;89(6):564-575. doi: 10.2175/106143017X14902968254467. Epub 2017 Apr 12.


Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species: GBS coffee phylogeny and the evolution of caffeine content.

Hamon P, Grover CE, Davis AP, Rakotomalala JJ, Raharimalala NE, Albert VA, Sreenath HL, Stoffelen P, Mitchell SE, Couturon E, Hamon S, de Kochko A, Crouzillat D, Rigoreau M, Sumirat U, Akaffou S, Guyot R.

Mol Phylogenet Evol. 2017 Apr;109:351-361. doi: 10.1016/j.ympev.2017.02.009. Epub 2017 Feb 16.


The Comparative Toxicogenomics Database: update 2017.

Davis AP, Grondin CJ, Johnson RJ, Sciaky D, King BL, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ.

Nucleic Acids Res. 2017 Jan 4;45(D1):D972-D978. doi: 10.1093/nar/gkw838. Epub 2016 Sep 19.


Crystal structure of a complex between β-glucopyranose and a macrocyclic receptor with dendritic multicharged water solubilizing chains.

Mandal PK, Kauffmann B, Destecroix H, Ferrand Y, Davis AP, Huc I.

Chem Commun (Camb). 2016 Aug 4;52(60):9355-8. doi: 10.1039/c6cc04466b. Epub 2016 Jul 4.


Platform Synthetic Lectins for Divalent Carbohydrate Recognition in Water.

Carter TS, Mooibroek TJ, Stewart PF, Crump MP, Galan MC, Davis AP.

Angew Chem Int Ed Engl. 2016 Aug 1;55(32):9311-5. doi: 10.1002/anie.201603082. Epub 2016 Jun 17.


Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database.

Davis AP, Wiegers TC, King BL, Wiegers J, Grondin CJ, Sciaky D, Johnson RJ, Mattingly CJ.

PLoS One. 2016 May 12;11(5):e0155530. doi: 10.1371/journal.pone.0155530. eCollection 2016.


Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database.

Grondin CJ, Davis AP, Wiegers TC, King BL, Wiegers JA, Reif DM, Hoppin JA, Mattingly CJ.

Environ Health Perspect. 2016 Oct;124(10):1592-1599. Epub 2016 May 12.


BioCreative V CDR task corpus: a resource for chemical disease relation extraction.

Li J, Sun Y, Johnson RJ, Sciaky D, Wei CH, Leaman R, Davis AP, Mattingly CJ, Wiegers TC, Lu Z.

Database (Oxford). 2016 May 9;2016. pii: baw068. doi: 10.1093/database/baw068. Print 2016.


Effect of Continuous Positive Airway Pressure on Stroke Rehabilitation: A Pilot Randomized Sham-Controlled Trial.

Khot SP, Davis AP, Crane DA, Tanzi PM, Lue DL, Claflin ES, Becker KJ, Longstreth WT Jr, Watson NF, Billings ME.

J Clin Sleep Med. 2016 Jul 15;12(7):1019-26. doi: 10.5664/jcsm.5940.


Adsorption of Compounds that Mimic Urban Stormwater Dissolved Organic Nitrogen.

Mohtadi M, James BR, Davis AP.

Water Environ Res. 2017 Feb 1;89(2):105-116. doi: 10.2175/106143016X14504669769010. Epub 2016 Apr 6.


Intracranial Aneurysms From Presumed Infective Endocarditis: The Dilemma of Persistently Negative Cultures.

Lockrow J, Longstreth W, Davis AP.

Neurohospitalist. 2016 Apr;6(2):80-6. doi: 10.1177/1941874415605879. Epub 2015 Sep 21. No abstract available.


Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task.

Wei CH, Peng Y, Leaman R, Davis AP, Mattingly CJ, Li J, Wiegers TC, Lu Z.

Database (Oxford). 2016 Mar 19;2016. pii: baw032. doi: 10.1093/database/baw032. Print 2016.


Targeted anion transporter delivery by coiled-coil driven membrane fusion.

Mora NL, Bahreman A, Valkenier H, Li H, Sharp TH, Sheppard DN, Davis AP, Kros A.

Chem Sci. 2016 Mar 1;7(3):1768-1772. doi: 10.1039/c5sc04282h. Epub 2016 Jan 7.


Synthetic Receptors for the High-Affinity Recognition of O-GlcNAc Derivatives.

Rios P, Carter TS, Mooibroek TJ, Crump MP, Lisbjerg M, Pittelkow M, Supekar NT, Boons GJ, Davis AP.

Angew Chem Int Ed Engl. 2016 Mar 1;55(10):3387-92. doi: 10.1002/anie.201510611. Epub 2016 Jan 28.


Synthesis and evaluation of a desymmetrised synthetic lectin: an approach to carbohydrate receptors with improved versatility.

Mooibroek TJ, Crump MP, Davis AP.

Org Biomol Chem. 2016 Feb 14;14(6):1930-3. doi: 10.1039/c6ob00023a.


Tilting and Tumbling in Transmembrane Anion Carriers: Activity Tuning through n-Alkyl Substitution.

Edwards SJ, Marques I, Dias CM, Tromans RA, Lees NR, Félix V, Valkenier H, Davis AP.

Chemistry. 2016 Feb;22(6):2004-2011. doi: 10.1002/chem.201504057. Epub 2016 Jan 8.

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