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Items: 1 to 50 of 79

1.

Varying Protein Quantity and Quality in the Maternal Diet During the Perinatal Period Affects Growth and Adiposity Risk in Female Adult Offspring in Rats (OR09-03-19).

Carlin G, Chaumontet C, Delteil C, Kodde A, van de Heijning B, van der Bee EM, Tomé D, Davila AM.

Curr Dev Nutr. 2019 Jun 13;3(Suppl 1). pii: nzz041.OR09-03-19. doi: 10.1093/cdn/nzz041.OR09-03-19. eCollection 2019 Jun.

2.

Aporé virus, a novel mammarenavirus (Bunyavirales: Arenaviridae) related to highly pathogenic virus from South America.

Fernandes J, Guterres A, de Oliveira RC, Jardim R, Dávila AMR, Hewson R, de Lemos ERS.

Mem Inst Oswaldo Cruz. 2019;114:e180586. doi: 10.1590/0074-02760180586. Epub 2019 May 23.

3.

Haem iron reshapes colonic luminal environment: impact on mucosal homeostasis and microbiome through aldehyde formation.

Martin OCB, Olier M, Ellero-Simatos S, Naud N, Dupuy J, Huc L, Taché S, Graillot V, Levêque M, Bézirard V, Héliès-Toussaint C, Estrada FBY, Tondereau V, Lippi Y, Naylies C, Peyriga L, Canlet C, Davila AM, Blachier F, Ferrier L, Boutet-Robinet E, Guéraud F, Théodorou V, Pierre FHF.

Microbiome. 2019 May 6;7(1):72. doi: 10.1186/s40168-019-0685-7.

4.

Dietary Protein Intake Level Modulates Mucosal Healing and Mucosa-Adherent Microbiota in Mouse Model of Colitis.

Vidal-Lletjós S, Andriamihaja M, Blais A, Grauso M, Lepage P, Davila AM, Viel R, Gaudichon C, Leclerc M, Blachier F, Lan A.

Nutrients. 2019 Feb 28;11(3). pii: E514. doi: 10.3390/nu11030514.

5.

Maternal High-Protein Diet during Pregnancy Modifies Rat Offspring Body Weight and Insulin Signalling but Not Macronutrient Preference in Adulthood.

Carlin G, Chaumontet C, Blachier F, Barbillon P, Darcel N, Blais A, Delteil C, Guillin FM, Blat S, van der Beek EM, Kodde A, Tomé D, Davila AM.

Nutrients. 2019 Jan 5;11(1). pii: E96. doi: 10.3390/nu11010096.

6.

High-protein diets for weight management: Interactions with the intestinal microbiota and consequences for gut health. A position paper by the my new gut study group.

Blachier F, Beaumont M, Portune KJ, Steuer N, Lan A, Audebert M, Khodorova N, Andriamihaja M, Airinei G, Benamouzig R, Davila AM, Armand L, Rampelli S, Brigidi P, Tomé D, Claus SP, Sanz Y.

Clin Nutr. 2019 Jun;38(3):1012-1022. doi: 10.1016/j.clnu.2018.09.016. Epub 2018 Sep 20. Review.

PMID:
30274898
7.

Homology Inference Based on a Reconciliation Approach for the Comparative Genomics of Protozoa.

Campos DA, Pereira EC, Jardim R, Cuadrat RR, Bernardes JS, Dávila AM.

Evol Bioinform Online. 2018 Jul 10;14:1176934318785138. doi: 10.1177/1176934318785138. eCollection 2018.

8.

Recovering Genomics Clusters of Secondary Metabolites from Lakes Using Genome-Resolved Metagenomics.

Cuadrat RRC, Ionescu D, Dávila AMR, Grossart HP.

Front Microbiol. 2018 Feb 20;9:251. doi: 10.3389/fmicb.2018.00251. eCollection 2018.

9.

Lipo-Protein Emulsion Structure in the Diet Affects Protein Digestion Kinetics, Intestinal Mucosa Parameters and Microbiota Composition.

Oberli M, Douard V, Beaumont M, Jaoui D, Devime F, Laurent S, Chaumontet C, Mat D, Le Feunteun S, Michon C, Davila AM, Fromentin G, Tomé D, Souchon I, Leclerc M, Gaudichon C, Blachier F.

Mol Nutr Food Res. 2018 Jan;62(2). doi: 10.1002/mnfr.201700570. Epub 2018 Jan 2.

PMID:
28994235
10.

Peroxisome proliferator-activated receptor gamma (PPARγ) regulates lactase expression and activity in the gut.

Fumery M, Speca S, Langlois A, Davila AM, Dubuquoy C, Grauso M, Martin Mena A, Figeac M, Metzger D, Rousseaux C, Colombel JF, Dubuquoy L, Desreumaux P, Bertin B.

EMBO Mol Med. 2017 Nov;9(11):1471-1481. doi: 10.15252/emmm.201707795.

11.

Quantity and source of dietary protein influence metabolite production by gut microbiota and rectal mucosa gene expression: a randomized, parallel, double-blind trial in overweight humans.

Beaumont M, Portune KJ, Steuer N, Lan A, Cerrudo V, Audebert M, Dumont F, Mancano G, Khodorova N, Andriamihaja M, Airinei G, Tomé D, Benamouzig R, Davila AM, Claus SP, Sanz Y, Blachier F.

Am J Clin Nutr. 2017 Oct;106(4):1005-1019. doi: 10.3945/ajcn.117.158816. Epub 2017 Sep 13.

PMID:
28903954
12.

SparkBLAST: scalable BLAST processing using in-memory operations.

de Castro MR, Tostes CDS, Dávila AMR, Senger H, da Silva FAB.

BMC Bioinformatics. 2017 Jun 27;18(1):318. doi: 10.1186/s12859-017-1723-8.

13.

Structure of protein emulsion in food impacts intestinal microbiota, caecal luminal content composition and distal intestine characteristics in rats.

Beaumont M, Jaoui D, Douard V, Mat D, Koeth F, Goustard B, Mayeur C, Mondot S, Hovaghimian A, Le Feunteun S, Chaumontet C, Davila AM, Tomé D, Souchon I, Michon C, Fromentin G, Blachier F, Leclerc M.

Mol Nutr Food Res. 2017 Oct;61(10). doi: 10.1002/mnfr.201700078. Epub 2017 Jul 5.

PMID:
28512779
14.

Epithelial response to a high-protein diet in rat colon.

Beaumont M, Andriamihaja M, Armand L, Grauso M, Jaffrézic F, Laloë D, Moroldo M, Davila AM, Tomé D, Blachier F, Lan A.

BMC Genomics. 2017 Jan 31;18(1):116. doi: 10.1186/s12864-017-3514-z.

15.

Changes in the Luminal Environment of the Colonic Epithelial Cells and Physiopathological Consequences.

Blachier F, Beaumont M, Andriamihaja M, Davila AM, Lan A, Grauso M, Armand L, Benamouzig R, Tomé D.

Am J Pathol. 2017 Mar;187(3):476-486. doi: 10.1016/j.ajpath.2016.11.015. Epub 2017 Jan 9. Review.

PMID:
28082121
16.
17.

Compared with Raw Bovine Meat, Boiling but Not Grilling, Barbecuing, or Roasting Decreases Protein Digestibility without Any Major Consequences for Intestinal Mucosa in Rats, although the Daily Ingestion of Bovine Meat Induces Histologic Modifications in the Colon.

Oberli M, Lan A, Khodorova N, Santé-Lhoutellier V, Walker F, Piedcoq J, Davila AM, Blachier F, Tomé D, Fromentin G, Gaudichon C.

J Nutr. 2016 Aug;146(8):1506-13. doi: 10.3945/jn.116.230839. Epub 2016 Jul 6.

PMID:
27385760
18.
19.

Detrimental effects for colonocytes of an increased exposure to luminal hydrogen sulfide: The adaptive response.

Beaumont M, Andriamihaja M, Lan A, Khodorova N, Audebert M, Blouin JM, Grauso M, Lancha L, Benetti PH, Benamouzig R, Tomé D, Bouillaud F, Davila AM, Blachier F.

Free Radic Biol Med. 2016 Apr;93:155-64. doi: 10.1016/j.freeradbiomed.2016.01.028. Epub 2016 Feb 2.

PMID:
26849947
20.

High-Protein Exposure during Gestation or Lactation or after Weaning Has a Period-Specific Signature on Rat Pup Weight, Adiposity, Food Intake, and Glucose Homeostasis up to 6 Weeks of Age.

Desclée de Maredsous C, Oozeer R, Barbillon P, Mary-Huard T, Delteil C, Blachier F, Tomé D, van der Beek EM, Davila AM.

J Nutr. 2016 Jan;146(1):21-9. doi: 10.3945/jn.115.216465. Epub 2015 Dec 16.

PMID:
26674762
21.

Metagenomic Analysis of Upwelling-Affected Brazilian Coastal Seawater Reveals Sequence Domains of Type I PKS and Modular NRPS.

Cuadrat RR, Cury JC, Dávila AM.

Int J Mol Sci. 2015 Nov 27;16(12):28285-95. doi: 10.3390/ijms161226101.

22.

Improved orthologous databases to ease protozoan targets inference.

Kotowski N, Jardim R, Dávila AM.

Parasit Vectors. 2015 Sep 29;8:494. doi: 10.1186/s13071-015-1090-0.

23.

Bacterial and Archaeal Communities Variability Associated with Upwelling and Anthropogenic Pressures in the Protection Area of Arraial do Cabo (Cabo Frio region - RJ).

Coelho-Souza SA, Araújo FV, Cury JC, Jesus HE, Pereira GC, Guimarães JR, Peixoto RS, Dávila AM, Rosado AS.

An Acad Bras Cienc. 2015 Sep;87(3):1737-50. doi: 10.1590/0001-3765201520140098. Epub 2015 Sep 15.

24.

High-protein diet differently modifies intestinal goblet cell characteristics and mucosal cytokine expression in ileum and colon.

Lan A, Andriamihaja M, Blouin JM, Liu X, Descatoire V, Desclée de Maredsous C, Davila AM, Walker F, Tomé D, Blachier F.

J Nutr Biochem. 2015 Jan;26(1):91-8. doi: 10.1016/j.jnutbio.2014.09.007. Epub 2014 Oct 13.

PMID:
25459886
25.

The Comparative Genomics and Phylogenomics of Leishmania amazonensis Parasite.

Tschoeke DA, Nunes GL, Jardim R, Lima J, Dumaresq AS, Gomes MR, de Mattos Pereira L, Loureiro DR, Stoco PH, de Matos Guedes HL, de Miranda AB, Ruiz J, Pitaluga A, Silva FP Jr, Probst CM, Dickens NJ, Mottram JC, Grisard EC, Dávila AM.

Evol Bioinform Online. 2014 Sep 23;10:131-53. doi: 10.4137/EBO.S13759. eCollection 2014.

26.

High-protein diet modifies colonic microbiota and luminal environment but not colonocyte metabolism in the rat model: the increased luminal bulk connection.

Liu X, Blouin JM, Santacruz A, Lan A, Andriamihaja M, Wilkanowicz S, Benetti PH, Tomé D, Sanz Y, Blachier F, Davila AM.

Am J Physiol Gastrointest Liver Physiol. 2014 Aug 15;307(4):G459-70. doi: 10.1152/ajpgi.00400.2013. Epub 2014 Jun 26.

27.

An orthology-based analysis of pathogenic protozoa impacting global health: an improved comparative genomics approach with prokaryotes and model eukaryote orthologs.

Cuadrat RR, da Serra Cruz SM, Tschoeke DA, Silva E, Tosta F, Jucá H, Jardim R, Campos ML, Mattoso M, Dávila AM.

OMICS. 2014 Aug;18(8):524-38. doi: 10.1089/omi.2013.0172. Epub 2014 Jun 24.

28.

STINGRAY: system for integrated genomic resources and analysis.

Wagner G, Jardim R, Tschoeke DA, Loureiro DR, Ocaña KA, Ribeiro AC, Emmel VE, Probst CM, Pitaluga AN, Grisard EC, Cavalcanti MC, Campos ML, Mattoso M, Dávila AM.

BMC Res Notes. 2014 Mar 7;7:132. doi: 10.1186/1756-0500-7-132.

29.

Beneficial effects of an amino acid mixture on colonic mucosal healing in rats.

Liu X, Beaumont M, Walker F, Chaumontet C, Andriamihaja M, Matsumoto H, Khodorova N, Lan A, Gaudichon C, Benamouzig R, Tomé D, Davila AM, Marie JC, Blachier F.

Inflamm Bowel Dis. 2013 Dec;19(13):2895-905. doi: 10.1097/01.MIB.0000435849.17263.c5.

PMID:
24193156
30.

Agreement between indirect calorimetry and traditional tests of lactose malabsorption.

Alexandre V, Davila AM, Bouchoucha M, Bertin C, Even P, Lamberto C, Tomé D, Benamouzig R.

Dig Liver Dis. 2013 Sep;45(9):727-32. doi: 10.1016/j.dld.2013.03.015. Epub 2013 Jun 29.

PMID:
23816697
31.

Assessment of drug resistance related genes as candidate markers for treatment outcome prediction of cutaneous leishmaniasis in Brazil.

Torres DC, Ribeiro-Alves M, Romero GA, Dávila AM, Cupolillo E.

Acta Trop. 2013 May;126(2):132-41. doi: 10.1016/j.actatropica.2013.02.002. Epub 2013 Feb 12.

32.

Lactose malabsorption and colonic fermentations alter host metabolism in rats.

Alexandre V, Even PC, Larue-Achagiotis C, Blouin JM, Blachier F, Benamouzig R, Tomé D, Davila AM.

Br J Nutr. 2013 Aug;110(4):625-31. doi: 10.1017/S0007114512005557. Epub 2013 Jan 15.

PMID:
23321004
33.

Re-print of "Intestinal luminal nitrogen metabolism: role of the gut microbiota and consequences for the host".

Davila AM, Blachier F, Gotteland M, Andriamihaja M, Benetti PH, Sanz Y, Tomé D.

Pharmacol Res. 2013 Mar;69(1):114-26. doi: 10.1016/j.phrs.2013.01.003. Epub 2013 Jan 12.

PMID:
23318949
34.

Intestinal luminal nitrogen metabolism: role of the gut microbiota and consequences for the host.

Davila AM, Blachier F, Gotteland M, Andriamihaja M, Benetti PH, Sanz Y, Tomé D.

Pharmacol Res. 2013 Feb;68(1):95-107. doi: 10.1016/j.phrs.2012.11.005. Epub 2012 Nov 24. Review.

PMID:
23183532
35.

The transcriptome of Lutzomyia longipalpis (Diptera: Psychodidae) male reproductive organs.

Azevedo RV, Dias DB, Bretãs JA, Mazzoni CJ, Souza NA, Albano RM, Wagner G, Davila AM, Peixoto AA.

PLoS One. 2012;7(4):e34495. doi: 10.1371/journal.pone.0034495. Epub 2012 Apr 5.

36.

Phylogenomics-based reconstruction of protozoan species tree.

Ocaña KA, Dávila AM.

Evol Bioinform Online. 2011;7:107-21. doi: 10.4137/EBO.S6861. Epub 2011 Jul 31.

37.

Multiresistance, beta-lactamase-encoding genes and bacterial diversity in hospital wastewater in Rio de Janeiro, Brazil.

Chagas TP, Seki LM, Cury JC, Oliveira JA, Dávila AM, Silva DM, Asensi MD.

J Appl Microbiol. 2011 Sep;111(3):572-81. doi: 10.1111/j.1365-2672.2011.05072.x. Epub 2011 Jul 4.

38.

Microbial diversity of a Brazilian coastal region influenced by an upwelling system and anthropogenic activity.

Cury JC, Araujo FV, Coelho-Souza SA, Peixoto RS, Oliveira JA, Santos HF, Dávila AM, Rosado AS.

PLoS One. 2011 Jan 27;6(1):e16553. doi: 10.1371/journal.pone.0016553.

39.

Channelling of arginine in NO and polyamine pathways in colonocytes and consequences.

Blachier F, Davila AM, Benamouzig R, Tome D.

Front Biosci (Landmark Ed). 2011 Jan 1;16:1331-43. Review.

PMID:
21196235
40.

Colon luminal content and epithelial cell morphology are markedly modified in rats fed with a high-protein diet.

Andriamihaja M, Davila AM, Eklou-Lawson M, Petit N, Delpal S, Allek F, Blais A, Delteil C, Tomé D, Blachier F.

Am J Physiol Gastrointest Liver Physiol. 2010 Nov;299(5):G1030-7. doi: 10.1152/ajpgi.00149.2010. Epub 2010 Aug 5.

41.

Detecting distant homologies on protozoans metabolic pathways using scientific workflows.

da Cruz SM, Batista V, Silva E, Tosta F, Vilela C, Cuadrat R, Tschoeke D, Dávila AM, Campos ML, Mattoso M.

Int J Data Min Bioinform. 2010;4(3):256-80.

PMID:
20681479
42.

Transcriptomic analyses of the avirulent protozoan parasite Trypanosoma rangeli.

Grisard EC, Stoco PH, Wagner G, Sincero TC, Rotava G, Rodrigues JB, Snoeijer CQ, Koerich LB, Sperandio MM, Bayer-Santos E, Fragoso SP, Goldenberg S, Triana O, Vallejo GA, Tyler KM, Dávila AM, Steindel M.

Mol Biochem Parasitol. 2010 Nov;174(1):18-25. doi: 10.1016/j.molbiopara.2010.06.008. Epub 2010 Jun 19.

PMID:
20600354
43.

Luminal sulfide and large intestine mucosa: friend or foe?

Blachier F, Davila AM, Mimoun S, Benetti PH, Atanasiu C, Andriamihaja M, Benamouzig R, Bouillaud F, Tomé D.

Amino Acids. 2010 Jul;39(2):335-47. doi: 10.1007/s00726-009-0445-2. Epub 2009 Dec 18. Review.

PMID:
20020161
44.

Transcriptome analysis of Taenia solium cysticerci using Open Reading Frame ESTs (ORESTES).

Almeida CR, Stoco PH, Wagner G, Sincero TC, Rotava G, Bayer-Santos E, Rodrigues JB, Sperandio MM, Maia AA, Ojopi EP, Zaha A, Ferreira HB, Tyler KM, Dávila AM, Grisard EC, Dias-Neto E.

Parasit Vectors. 2009 Jul 31;2(1):35. doi: 10.1186/1756-3305-2-35.

45.

EST sequencing of blood-fed and Leishmania-infected midgut of Lutzomyia longipalpis, the principal visceral leishmaniasis vector in the Americas.

Pitaluga AN, Beteille V, Lobo AR, Ortigão-Farias JR, Dávila AM, Souza AA, Ramalho-Ortigão JM, Traub-Cseko YM.

Mol Genet Genomics. 2009 Sep;282(3):307-17. doi: 10.1007/s00438-009-0466-2. Epub 2009 Jun 30.

PMID:
19565270
46.

Improving model construction of profile HMMs for remote homology detection through structural alignment.

Bernardes JS, Dávila AM, Costa VS, Zaverucha G.

BMC Bioinformatics. 2007 Nov 9;8:435.

47.

ProtozoaDB: dynamic visualization and exploration of protozoan genomes.

Dávila AM, Mendes PN, Wagner G, Tschoeke DA, Cuadrat RR, Liberman F, Matos L, Satake T, Ocaña KA, Triana O, Cruz SM, Jucá HC, Cury JC, Silva FN, Geronimo GA, Ruiz M, Ruback E, Silva FP Jr, Probst CM, Grisard EC, Krieger MA, Goldenberg S, Cavalcanti MC, Moraes MO, Campos ML, Mattoso M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D547-52. Epub 2007 Nov 2.

48.

Molecular diversity of disintegrin-like domains within metalloproteinase precursors of Bothrops jararaca.

Cidade DA, Wermelinger LS, Lôbo-Hajdu G, Dávila AM, Bon C, Zingali RB, Albano RM.

Toxicon. 2006 Oct;48(5):590-9. Epub 2006 Jul 13.

PMID:
16919699
49.

Bothrops jararaca venom gland transcriptome: analysis of the gene expression pattern.

Cidade DA, Simão TA, Dávila AM, Wagner G, Junqueira-de-Azevedo IL, Ho PL, Bon C, Zingali RB, Albano RM.

Toxicon. 2006 Sep 15;48(4):437-61. Epub 2006 Jul 7.

PMID:
16905169
50.

GARSA: genomic analysis resources for sequence annotation.

Dávila AM, Lorenzini DM, Mendes PN, Satake TS, Sousa GR, Campos LM, Mazzoni CJ, Wagner G, Pires PF, Grisard EC, Cavalcanti MC, Campos ML.

Bioinformatics. 2005 Dec 1;21(23):4302-3. Epub 2005 Oct 6.

PMID:
16210424

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