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Feasibility of a plasma bioassay to assess oxidative protection of low-density lipoproteins by high-density lipoproteins.

Swertfeger DK, Rebholz S, Li H, Shah AS, Davidson WS, Lu LJ.

J Clin Lipidol. 2018 Nov - Dec;12(6):1539-1548. doi: 10.1016/j.jacl.2018.08.007. Epub 2018 Aug 27.


The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly.

Christensen KA, Rondeau EB, Minkley DR, Leong JS, Nugent CM, Danzmann RG, Ferguson MM, Stadnik A, Devlin RH, Muzzerall R, Edwards M, Davidson WS, Koop BF.

PLoS One. 2018 Sep 13;13(9):e0204076. doi: 10.1371/journal.pone.0204076. eCollection 2018.


Apolipoprotein A-IV binds αIIbβ3 integrin and inhibits thrombosis.

Xu XR, Wang Y, Adili R, Ju L, Spring CM, Jin JW, Yang H, Neves MAD, Chen P, Yang Y, Lei X, Chen Y, Gallant RC, Xu M, Zhang H, Song J, Ke P, Zhang D, Carrim N, Yu SY, Zhu G, She YM, Cyr T, Fu W, Liu G, Connelly PW, Rand ML, Adeli K, Freedman J, Lee JE, Tso P, Marchese P, Davidson WS, Jackson SP, Zhu C, Ruggeri ZM, Ni H.

Nat Commun. 2018 Sep 6;9(1):3608. doi: 10.1038/s41467-018-05806-0.


Regulatory processes that control haploid expression of salmon sperm mRNAs.

von Schalburg KR, Rondeau EB, Leong JS, Davidson WS, Koop BF.

BMC Res Notes. 2018 Sep 3;11(1):639. doi: 10.1186/s13104-018-3749-z.


A thumbwheel mechanism for APOA1 activation of LCAT activity in HDL.

Cooke AL, Morris J, Melchior JT, Street SE, Jerome WG, Huang R, Herr AB, Smith LE, Segrest JP, Remaley AT, Shah AS, Thompson TB, Davidson WS.

J Lipid Res. 2018 Jul;59(7):1244-1255. doi: 10.1194/jlr.M085332. Epub 2018 May 17.


Loss of microRNA-128 promotes cardiomyocyte proliferation and heart regeneration.

Huang W, Feng Y, Liang J, Yu H, Wang C, Wang B, Wang M, Jiang L, Meng W, Cai W, Medvedovic M, Chen J, Paul C, Davidson WS, Sadayappan S, Stambrook PJ, Yu XY, Wang Y.

Nat Commun. 2018 Feb 16;9(1):700. doi: 10.1038/s41467-018-03019-z.


Genomic Predictions and Genome-Wide Association Study of Resistance Against Piscirickettsia salmonis in Coho Salmon (Oncorhynchus kisutch) Using ddRAD Sequencing.

Barría A, Christensen KA, Yoshida GM, Correa K, Jedlicki A, Lhorente JP, Davidson WS, Yáñez JM.

G3 (Bethesda). 2018 Mar 28;8(4):1183-1194. doi: 10.1534/g3.118.200053.


Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins.

Lima DB, Melchior JT, Morris J, Barbosa VC, Chamot-Rooke J, Fioramonte M, Souza TACB, Fischer JSG, Gozzo FC, Carvalho PC, Davidson WS.

Nat Protoc. 2018 Mar;13(3):431-458. doi: 10.1038/nprot.2017.113. Epub 2018 Feb 1.


Silencing steroid receptor coactivator-1 in the nucleus of the solitary tract reduces estrogenic effects on feeding and apolipoprotein A-IV expression.

Shen L, Liu Y, Tso P, Wang DQ, Davidson WS, Woods SC, Liu M.

J Biol Chem. 2018 Feb 9;293(6):2091-2101. doi: 10.1074/jbc.RA117.000237. Epub 2017 Dec 20.


Effects of Multiple Freeze/Thaw Cycles on Measurements of Potential Novel Biomarkers Associated With Adverse Pregnancy Outcomes.

Rebholz SL, Melchior JT, Welge JA, Remaley AT, Davidson WS, Woollett LA.

J Clin Lab Med. 2017;2(1). doi: 10.16966/2572-9578.107. Epub 2017 Feb 21.


A consensus model of human apolipoprotein A-I in its monomeric and lipid-free state.

Melchior JT, Walker RG, Cooke AL, Morris J, Castleberry M, Thompson TB, Jones MK, Song HD, Rye KA, Oda MN, Sorci-Thomas MG, Thomas MJ, Heinecke JW, Mei X, Atkinson D, Segrest JP, Lund-Katz S, Phillips MC, Davidson WS.

Nat Struct Mol Biol. 2017 Dec;24(12):1093-1099. doi: 10.1038/nsmb.3501. Epub 2017 Nov 13.


Subcellular localization and characterization of estrogenic pathway regulators and mediators in Atlantic salmon spermatozoal cells.

von Schalburg KR, Gowen BE, Leong JS, Rondeau EB, Davidson WS, Koop BF.

Histochem Cell Biol. 2018 Jan;149(1):75-96. doi: 10.1007/s00418-017-1611-3. Epub 2017 Oct 5.


Studies in genetically modified mice implicate maternal HDL as a mediator of fetal growth.

Rebholz SL, Melchior JT, Davidson WS, Jones HN, Welge JA, Prentice AM, Moore SE, Woollett LA.

FASEB J. 2018 Feb;32(2):717-727. doi: 10.1096/fj.201700528R. Epub 2018 Jan 4.


Obesity is associated with an altered HDL subspecies profile among adolescents with metabolic disease.

Davidson WS, Heink A, Sexmith H, Dolan LM, Gordon SM, Otvos JD, Melchior JT, Elder DA, Khoury J, Geh E, Shah AS.

J Lipid Res. 2017 Sep;58(9):1916-1923. doi: 10.1194/jlr.M078667. Epub 2017 Jul 25.


Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.

Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop BF, Lien S, Maass A, Martin SAM, McGinnity P, Montecino M, Naish KA, Nichols KM, Ólafsson K, Omholt SW, Palti Y, Plastow GS, Rexroad CE Rd, Rise ML, Ritchie RJ, Sandve SR, Schulte PM, Tello A, Vidal R, Vik JO, Wargelius A, Yáñez JM; FAASG Consortium.

BMC Genomics. 2017 Jun 27;18(1):484. doi: 10.1186/s12864-017-3862-8.


Apolipoprotein A-II alters the proteome of human lipoproteins and enhances cholesterol efflux from ABCA1.

Melchior JT, Street SE, Andraski AB, Furtado JD, Sacks FM, Shute RL, Greve EI, Swertfeger DK, Li H, Shah AS, Lu LJ, Davidson WS.

J Lipid Res. 2017 Jul;58(7):1374-1385. doi: 10.1194/jlr.M075382. Epub 2017 May 5.


High density lipoproteins selectively promote the survival of human regulatory T cells.

Rueda CM, Rodríguez-Perea AL, Moreno-Fernandez M, Jackson CM, Melchior JT, Davidson WS, Chougnet CA.

J Lipid Res. 2017 Aug;58(8):1514-1523. doi: 10.1194/jlr.M072835. Epub 2017 Apr 4.


Autopolyploidy genome duplication preserves other ancient genome duplications in Atlantic salmon (Salmo salar).

Christensen KA, Davidson WS.

PLoS One. 2017 Feb 27;12(2):e0173053. doi: 10.1371/journal.pone.0173053. eCollection 2017.


Mapping Atheroprotective Functions and Related Proteins/Lipoproteins in Size Fractionated Human Plasma.

Swertfeger DK, Li H, Rebholz S, Zhu X, Shah AS, Davidson WS, Lu LJ.

Mol Cell Proteomics. 2017 Apr;16(4):680-693. doi: 10.1074/mcp.M116.066290. Epub 2017 Feb 21.


Weight loss surgery in adolescents corrects high-density lipoprotein subspecies and their function.

Davidson WS, Inge TH, Sexmith H, Heink A, Elder D, Hui DY, Melchior JT, Kelesidis T, Shah AS.

Int J Obes (Lond). 2017 Jan;41(1):83-89. doi: 10.1038/ijo.2016.190. Epub 2016 Oct 26.


Impact of genetic deletion of platform apolipoproteins on the size distribution of the murine lipoproteome.

Gordon SM, Li H, Zhu X, Tso P, Reardon CA, Shah AS, Lu LJ, Davidson WS.

J Proteomics. 2016 Sep 2;146:184-94. doi: 10.1016/j.jprot.2016.06.035. Epub 2016 Jul 3.


Erratum. The Effects of Type 2 Diabetes on Lipoprotein Composition and Arterial Stiffness in Male Youth. Diabetes 2013;62:2958-2967.

Gordon SM, Davidson WS, Urbina EM, Dolan LM, Heink A, Zang H, Lu LJ, Shah AS.

Diabetes. 2016 Jul;65(7):2100. doi: 10.2337/db16-er07. No abstract available.


Superiority of lipoprotein particle number to detect associations with arterial thickness and stiffness in obese youth with and without prediabetes.

Shah AS, Davidson WS, Gao Z, Dolan LM, Kimball TR, Urbina EM.

J Clin Lipidol. 2016 May-Jun;10(3):610-8. doi: 10.1016/j.jacl.2016.01.007. Epub 2016 Feb 16.


The Atlantic salmon genome provides insights into rediploidization.

Lien S, Koop BF, Sandve SR, Miller JR, Kent MP, Nome T, Hvidsten TR, Leong JS, Minkley DR, Zimin A, Grammes F, Grove H, Gjuvsland A, Walenz B, Hermansen RA, von Schalburg K, Rondeau EB, Di Genova A, Samy JK, Olav Vik J, Vigeland MD, Caler L, Grimholt U, Jentoft S, Våge DI, de Jong P, Moen T, Baranski M, Palti Y, Smith DR, Yorke JA, Nederbragt AJ, Tooming-Klunderud A, Jakobsen KS, Jiang X, Fan D, Hu Y, Liberles DA, Vidal R, Iturra P, Jones SJ, Jonassen I, Maass A, Omholt SW, Davidson WS.

Nature. 2016 May 12;533(7602):200-5. doi: 10.1038/nature17164. Epub 2016 Apr 18.


Speciated High-Density Lipoprotein Biogenesis and Functionality.

Rosales C, Davidson WS, Gillard BK, Gotto AM Jr, Pownall HJ.

Curr Atheroscler Rep. 2016 May;18(5):25. doi: 10.1007/s11883-016-0572-7. Review.


Apolipoprotein A-I and Paraoxonase-1 Are Potential Blood Biomarkers for Ischemic Stroke Diagnosis.

Walsh KB, Hart K, Roll S, Sperling M, Unruh D, Davidson WS, Lindsell CJ, Adeoye O.

J Stroke Cerebrovasc Dis. 2016 Jun;25(6):1360-5. doi: 10.1016/j.jstrokecerebrovasdis.2016.02.027. Epub 2016 Mar 16.


Functional Divergence in Teleost Cardiac Troponin Paralogs Guides Variation in the Interaction of TnI Switch Region with TnC.

Genge CE, Stevens CM, Davidson WS, Singh G, Peter Tieleman D, Tibbits GF.

Genome Biol Evol. 2016 Apr 11;8(4):994-1011. doi: 10.1093/gbe/evw044.


The effects of apolipoprotein B depletion on HDL subspecies composition and function.

Davidson WS, Heink A, Sexmith H, Melchior JT, Gordon SM, Kuklenyik Z, Woollett L, Barr JR, Jones JI, Toth CA, Shah AS.

J Lipid Res. 2016 Apr;57(4):674-86. doi: 10.1194/jlr.M066613. Epub 2016 Feb 23. Erratum in: J Lipid Res. 2016 Jul;57(7):1322.


An Evaluation of the Crystal Structure of C-terminal Truncated Apolipoprotein A-I in Solution Reveals Structural Dynamics Related to Lipid Binding.

Melchior JT, Walker RG, Morris J, Jones MK, Segrest JP, Lima DB, Carvalho PC, Gozzo FC, Castleberry M, Thompson TB, Davidson WS.

J Biol Chem. 2016 Mar 4;291(10):5439-51. doi: 10.1074/jbc.M115.706093. Epub 2016 Jan 11.


Evidence of recent signatures of selection during domestication in an Atlantic salmon population.

Gutierrez AP, Yáñez JM, Davidson WS.

Mar Genomics. 2016 Apr;26:41-50. doi: 10.1016/j.margen.2015.12.007. Epub 2015 Dec 23.


Interaction of ApoA-IV with NR4A1 and NR1D1 Represses G6Pase and PEPCK Transcription: Nuclear Receptor-Mediated Downregulation of Hepatic Gluconeogenesis in Mice and a Human Hepatocyte Cell Line.

Li X, Xu M, Wang F, Ji Y, DavidsoN WS, Li Z, Tso P.

PLoS One. 2015 Nov 10;10(11):e0142098. doi: 10.1371/journal.pone.0142098. eCollection 2015.


Genome-wide association analysis reveals loci associated with resistance against Piscirickettsia salmonis in two Atlantic salmon (Salmo salar L.) chromosomes.

Correa K, Lhorente JP, López ME, Bassini L, Naswa S, Deeb N, Di Genova A, Maass A, Davidson WS, Yáñez JM.

BMC Genomics. 2015 Oct 24;16:854. doi: 10.1186/s12864-015-2038-7.


Red Blood Cell Dysfunction Induced by High-Fat Diet: Potential Implications for Obesity-Related Atherosclerosis.

Unruh D, Srinivasan R, Benson T, Haigh S, Coyle D, Batra N, Keil R, Sturm R, Blanco V, Palascak M, Franco RS, Tong W, Chatterjee T, Hui DY, Davidson WS, Aronow BJ, Kalfa T, Manka D, Peairs A, Blomkalns A, Fulton DJ, Brittain JE, Weintraub NL, Bogdanov VY.

Circulation. 2015 Nov 17;132(20):1898-908. doi: 10.1161/CIRCULATIONAHA.115.017313. Epub 2015 Oct 14.


Genomic Instability of the Sex-Determining Locus in Atlantic Salmon (Salmo salar).

Lubieniecki KP, Lin S, Cabana EI, Li J, Lai YY, Davidson WS.

G3 (Bethesda). 2015 Sep 22;5(11):2513-22. doi: 10.1534/g3.115.020115.


Expression analysis of sex-determining pathway genes during development in male and female Atlantic salmon (Salmo salar).

Lubieniecki KP, Botwright NA, Taylor RS, Evans BS, Cook MT, Davidson WS.

Physiol Genomics. 2015 Dec;47(12):581-7. doi: 10.1152/physiolgenomics.00013.2015. Epub 2015 Sep 1.


Network-Based Analysis on Orthogonal Separation of Human Plasma Uncovers Distinct High Density Lipoprotein Complexes.

Li H, Gordon SM, Zhu X, Deng J, Swertfeger DK, Davidson WS, Lu LJ.

J Proteome Res. 2015 Aug 7;14(8):3082-94. doi: 10.1021/acs.jproteome.5b00419. Epub 2015 Jun 30.


Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon.

Moen T, Torgersen J, Santi N, Davidson WS, Baranski M, Ødegård J, Kjøglum S, Velle B, Kent M, Lubieniecki KP, Isdal E, Lien S.

Genetics. 2015 Aug;200(4):1313-26. doi: 10.1534/genetics.115.175406. Epub 2015 Jun 2.


A Comparison of Methods To Enhance Protein Detection of Lipoproteins by Mass Spectrometry.

Heink A, Davidson WS, Swertfeger DK, Lu LJ, Shah AS.

J Proteome Res. 2015 Jul 2;14(7):2943-50. doi: 10.1021/acs.jproteome.5b00270. Epub 2015 Jun 12.


A comparison of the mouse and human lipoproteome: suitability of the mouse model for studies of human lipoproteins.

Gordon SM, Li H, Zhu X, Shah AS, Lu LJ, Davidson WS.

J Proteome Res. 2015 Jun 5;14(6):2686-95. doi: 10.1021/acs.jproteome.5b00213. Epub 2015 Apr 27.


Genome-wide association study (GWAS) for growth rate and age at sexual maturation in Atlantic salmon (Salmo salar).

Gutierrez AP, Yáñez JM, Fukui S, Swift B, Davidson WS.

PLoS One. 2015 Mar 10;10(3):e0119730. doi: 10.1371/journal.pone.0119730. eCollection 2015.


Role of Conserved Proline Residues in Human Apolipoprotein A-IV Structure and Function.

Deng X, Walker RG, Morris J, Davidson WS, Thompson TB.

J Biol Chem. 2015 Apr 24;290(17):10689-702. doi: 10.1074/jbc.M115.637058. Epub 2015 Mar 2.


Structure of HDL: particle subclasses and molecular components.

Kontush A, Lindahl M, Lhomme M, Calabresi L, Chapman MJ, Davidson WS.

Handb Exp Pharmacol. 2015;224:3-51. doi: 10.1007/978-3-319-09665-0_1. Review.


HDL-C vs HDL-P: how changing one letter could make a difference in understanding the role of high-density lipoprotein in disease.

Davidson WS.

Clin Chem. 2014 Nov;60(11):e1-3. doi: 10.1373/clinchem.2014.232769. Epub 2014 Oct 3. No abstract available.


Genomic organization and evolution of the trace amine-associated receptor (TAAR) repertoire in Atlantic salmon (Salmo salar).

Tessarolo JA, Tabesh MJ, Nesbitt M, Davidson WS.

G3 (Bethesda). 2014 Apr 22;4(6):1135-41. doi: 10.1534/g3.114.010660.


Intraperitoneal CCK and fourth-intraventricular Apo AIV require both peripheral and NTS CCK1R to reduce food intake in male rats.

Lo CC, Davidson WS, Hibbard SK, Georgievsky M, Lee A, Tso P, Woods SC.

Endocrinology. 2014 May;155(5):1700-7. doi: 10.1210/en.2013-1846. Epub 2014 Feb 24.


The structure of human apolipoprotein A-IV as revealed by stable isotope-assisted cross-linking, molecular dynamics, and small angle x-ray scattering.

Walker RG, Deng X, Melchior JT, Morris J, Tso P, Jones MK, Segrest JP, Thompson TB, Davidson WS.

J Biol Chem. 2014 Feb 28;289(9):5596-608. doi: 10.1074/jbc.M113.541037. Epub 2014 Jan 14.


A Tribute to the Philadelphia Lipid Group on the Occasion of Their Retirement.

Davidson WS.

J Lipid Res. 2013 Dec 9. [Epub ahead of print]


Apolipoprotein A-IV reduces hepatic gluconeogenesis through nuclear receptor NR1D1.

Li X, Xu M, Wang F, Kohan AB, Haas MK, Yang Q, Lou D, Obici S, Davidson WS, Tso P.

J Biol Chem. 2014 Jan 24;289(4):2396-404. doi: 10.1074/jbc.M113.511766. Epub 2013 Dec 5.


Sex-specific expression and localization of aromatase and its regulators during embryonic and larval development of Atlantic salmon.

von Schalburg KR, Gowen BE, Messmer AM, Davidson WS, Koop BF.

Comp Biochem Physiol B Biochem Mol Biol. 2014 Feb;168:33-44. doi: 10.1016/j.cbpb.2013.11.004. Epub 2013 Nov 13.


Understanding salmonid biology from the Atlantic salmon genome.

Davidson WS.

Genome. 2013 Oct;56(10):548-50. doi: 10.1139/gen-2013-0163. No abstract available.


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