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Items: 1 to 50 of 75

1.

Correction to: Dynamic linear models guide design and analysis of microbiota studies within artificial human guts.

Silverman JD, Durand HK, Bloom RJ, Mukherjee S, David LA.

Microbiome. 2018 Nov 27;6(1):212. doi: 10.1186/s40168-018-0601-6.

2.

Dynamic linear models guide design and analysis of microbiota studies within artificial human guts.

Silverman JD, Durand HK, Bloom RJ, Mukherjee S, David LA.

Microbiome. 2018 Nov 12;6(1):202. doi: 10.1186/s40168-018-0584-3. Erratum in: Microbiome. 2018 Nov 27;6(1):212.

3.

Microbial nitrogen limitation in the mammalian large intestine.

Reese AT, Pereira FC, Schintlmeister A, Berry D, Wagner M, Hale LP, Wu A, Jiang S, Durand HK, Zhou X, Premont RT, Diehl AM, O'Connell TM, Alberts SC, Kartzinel TR, Pringle RM, Dunn RR, Wright JP, David LA.

Nat Microbiol. 2018 Dec;3(12):1441-1450. doi: 10.1038/s41564-018-0267-7. Epub 2018 Oct 29.

4.

Lead Optimization of 5-Aryl Benzimidazolone- and Oxindole-Based AMPA Receptor Modulators Selective for TARP γ-8.

Ravula S, Savall BM, Wu N, Lord B, Coe K, Wang K, Seierstad M, Swanson DM, Ziff J, Nguyen M, Leung P, Rynberg R, La D, Pippel DJ, Koudriakova T, Lovenberg TW, Carruthers NI, Maher MP, Ameriks MK.

ACS Med Chem Lett. 2018 Jul 13;9(8):821-826. doi: 10.1021/acsmedchemlett.8b00215. eCollection 2018 Aug 9.

PMID:
30128074
5.

Antibiotic-induced changes in the microbiota disrupt redox dynamics in the gut.

Reese AT, Cho EH, Klitzman B, Nichols SP, Wisniewski NA, Villa MM, Durand HK, Jiang S, Midani FS, Nimmagadda SN, O'Connell TM, Wright JP, Deshusses MA, David LA.

Elife. 2018 Jun 19;7. pii: e35987. doi: 10.7554/eLife.35987.

6.

Hamartoma-like lesions in the mouse retina: an animal model of Pten hamartoma tumour syndrome.

Tachibana N, Touahri Y, Dixit R, David LA, Adnani L, Cantrup R, Aavani T, Wong RO, Logan C, Kurek KC, Schuurmans C.

Dis Model Mech. 2018 May 21;11(5). pii: dmm031005. doi: 10.1242/dmm.031005.

7.

Human Gut Microbiota Predicts Susceptibility to Vibrio cholerae Infection.

Midani FS, Weil AA, Chowdhury F, Begum YA, Khan AI, Debela MD, Durand HK, Reese AT, Nimmagadda SN, Silverman JD, Ellis CN, Ryan ET, Calderwood SB, Harris JB, Qadri F, David LA, LaRocque RC.

J Infect Dis. 2018 Jul 13;218(4):645-653. doi: 10.1093/infdis/jiy192.

PMID:
29659916
8.

Toward Personalized Control of Human Gut Bacterial Communities.

David LA.

mSystems. 2018 Mar 20;3(2). pii: e00165-17. doi: 10.1128/mSystems.00165-17. eCollection 2018 Mar-Apr.

9.

Plant community and soil conditions individually affect soil microbial community assembly in experimental mesocosms.

Reese AT, Lulow K, David LA, Wright JP.

Ecol Evol. 2017 Dec 20;8(2):1196-1205. doi: 10.1002/ece3.3734. eCollection 2018 Jan.

10.

Computational design of environmental sensors for the potent opioid fentanyl.

Bick MJ, Greisen PJ, Morey KJ, Antunes MS, La D, Sankaran B, Reymond L, Johnsson K, Medford JI, Baker D.

Elife. 2017 Sep 19;6. pii: e28909. doi: 10.7554/eLife.28909.

11.

An Immunohistochemical Investigation of Renal Phospholipidosis and Toxicity in Rats.

Ma JY, Snook S, Garrovillo S, Johnson C, La D.

Int J Toxicol. 2017 Sep/Oct;36(5):386-394. doi: 10.1177/1091581817726040. Epub 2017 Aug 18.

PMID:
28820006
12.

Computational design of trimeric influenza-neutralizing proteins targeting the hemagglutinin receptor binding site.

Strauch EM, Bernard SM, La D, Bohn AJ, Lee PS, Anderson CE, Nieusma T, Holstein CA, Garcia NK, Hooper KA, Ravichandran R, Nelson JW, Sheffler W, Bloom JD, Lee KK, Ward AB, Yager P, Fuller DH, Wilson IA, Baker D.

Nat Biotechnol. 2017 Jul;35(7):667-671. doi: 10.1038/nbt.3907. Epub 2017 Jun 12.

13.

Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets.

Washburne AD, Silverman JD, Leff JW, Bennett DJ, Darcy JL, Mukherjee S, Fierer N, David LA.

PeerJ. 2017 Feb 9;5:e2969. doi: 10.7717/peerj.2969. eCollection 2017.

14.

Clinical Development of Histamine H4 Receptor Antagonists.

Thurmond RL, Venable J, Savall B, La D, Snook S, Dunford PJ, Edwards JP.

Handb Exp Pharmacol. 2017;241:301-320. doi: 10.1007/164_2016_130. Review.

PMID:
28233185
15.

A phylogenetic transform enhances analysis of compositional microbiota data.

Silverman JD, Washburne AD, Mukherjee S, David LA.

Elife. 2017 Feb 15;6. pii: e21887. doi: 10.7554/eLife.21887.

16.
17.

Erratum to: Host lifestyle affects human microbiota on daily timescales.

David LA, Materna AC, Friedman J, Baptista MI, Blackburn MC, Perrotta A, Erdman SE, Alm EJ.

Genome Biol. 2016 May 31;17(1):117. No abstract available.

18.

Modification of Ni-Rich FCG NMC and NCA Cathodes by Atomic Layer Deposition: Preventing Surface Phase Transitions for High-Voltage Lithium-Ion Batteries.

Mohanty D, Dahlberg K, King DM, David LA, Sefat AS, Wood DL, Daniel C, Dhar S, Mahajan V, Lee M, Albano F.

Sci Rep. 2016 May 26;6:26532. doi: 10.1038/srep26532.

19.

A pilot randomized controlled trial examining the feasibility, acceptability, and efficacy of Adapted Motivational Interviewing for post-operative bariatric surgery patients.

David LA, Sockalingam S, Wnuk S, Cassin SE.

Eat Behav. 2016 Aug;22:87-92. doi: 10.1016/j.eatbeh.2016.03.030. Epub 2016 Apr 13.

PMID:
27112113
20.

The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota.

Boursier J, Mueller O, Barret M, Machado M, Fizanne L, Araujo-Perez F, Guy CD, Seed PC, Rawls JF, David LA, Hunault G, Oberti F, Calès P, Diehl AM.

Hepatology. 2016 Mar;63(3):764-75. doi: 10.1002/hep.28356. Epub 2016 Jan 13.

21.

Ontogenetic Differences in Dietary Fat Influence Microbiota Assembly in the Zebrafish Gut.

Wong S, Stephens WZ, Burns AR, Stagaman K, David LA, Bohannan BJ, Guillemin K, Rawls JF.

MBio. 2015 Sep 29;6(5):e00687-15. doi: 10.1128/mBio.00687-15.

22.

Preventing intramedullary guidewire migration using an electrosurgery scratchpad.

Khan HU, David LA.

Ann R Coll Surg Engl. 2015 May;97(4):315. doi: 10.1308/rcsann.2015.97.4.315a. No abstract available.

23.

Gut microbial succession follows acute secretory diarrhea in humans.

David LA, Weil A, Ryan ET, Calderwood SB, Harris JB, Chowdhury F, Begum Y, Qadri F, LaRocque RC, Turnbaugh PJ.

MBio. 2015 May 19;6(3):e00381-15. doi: 10.1128/mBio.00381-15.

24.

Next generation sequencing of the hepatitis C virus NS5B gene reveals potential novel S282 drug resistance mutations.

Ji H, Kozak RA, Biondi MJ, Pilon R, Vallee D, Liang BB, La D, Kim J, Van Domselaar G, Leonard L, Sandstrom P, Brooks J.

Virology. 2015 Mar;477:1-9. doi: 10.1016/j.virol.2014.12.037. Epub 2015 Jan 17.

25.

Host lifestyle affects human microbiota on daily timescales.

David LA, Materna AC, Friedman J, Campos-Baptista MI, Blackburn MC, Perrotta A, Erdman SE, Alm EJ.

Genome Biol. 2014;15(7):R89. Erratum in: Genome Biol. 2016;17(1):117.

26.

Clinical and preclinical characterization of the histamine H(4) receptor antagonist JNJ-39758979.

Thurmond RL, Chen B, Dunford PJ, Greenspan AJ, Karlsson L, La D, Ward P, Xu XL.

J Pharmacol Exp Ther. 2014 May;349(2):176-84. doi: 10.1124/jpet.113.211714. Epub 2014 Feb 18.

PMID:
24549371
27.

Diet rapidly and reproducibly alters the human gut microbiome.

David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, Biddinger SB, Dutton RJ, Turnbaugh PJ.

Nature. 2014 Jan 23;505(7484):559-63. doi: 10.1038/nature12820. Epub 2013 Dec 11.

28.

[Abnormal glucose tolerance and long-term prognosis in patients with acute myocardial infarction].

David LA, Grosu AA.

Kardiologiia. 2013;53(9):15-20. Russian.

PMID:
24090381
29.

Time course of renal proximal tubule injury, reversal, and related biomarker changes in rats following cisplatin administration.

McDuffie JE, Ma JY, Sablad M, Sonee M, Varacallo L, Louden C, Guy A, Vegas J, Liu X, La D, Snook S.

Int J Toxicol. 2013 Jul;32(4):251-60. doi: 10.1177/1091581813493013. Epub 2013 Jun 20.

PMID:
23788329
30.

Predicting permanent and transient protein-protein interfaces.

La D, Kong M, Hoffman W, Choi YI, Kihara D.

Proteins. 2013 May;81(5):805-18. doi: 10.1002/prot.24235. Epub 2013 Jan 15.

31.

Reproducibility of Vibrionaceae population structure in coastal bacterioplankton.

Szabo G, Preheim SP, Kauffman KM, David LA, Shapiro J, Alm EJ, Polz MF.

ISME J. 2013 Mar;7(3):509-19. doi: 10.1038/ismej.2012.134. Epub 2012 Nov 22.

32.

Efferent duct toxicity with secondary testicular changes in rats following administration of a novel leukotriene A₄ hydrolase inhibitor.

La DK, Creasy DM, Hess RA, Baxter E, Pereira ME, Johnson CA, Vinken P, Snook SS.

Toxicol Pathol. 2012 Jul;40(5):705-14. doi: 10.1177/0192623312441412. Epub 2012 May 2.

PMID:
22552396
33.

Enrichment of variations in KIR3DL1/S1 and KIR2DL2/L3 among H1N1/09 ICU patients: an exploratory study.

La D, Czarnecki C, El-Gabalawy H, Kumar A, Meyers AF, Bastien N, Simonsen JN, Plummer FA, Luo M.

PLoS One. 2011;6(12):e29200. doi: 10.1371/journal.pone.0029200. Epub 2011 Dec 28.

34.

Ecology drives a global network of gene exchange connecting the human microbiome.

Smillie CS, Smith MB, Friedman J, Cordero OX, David LA, Alm EJ.

Nature. 2011 Oct 30;480(7376):241-4. doi: 10.1038/nature10571.

PMID:
22037308
35.

A novel method for protein-protein interaction site prediction using phylogenetic substitution models.

La D, Kihara D.

Proteins. 2012 Jan;80(1):126-41. doi: 10.1002/prot.23169. Epub 2011 Oct 12.

36.

N-terminal Gly(224)-Gly(411) domain in Listeria adhesion protein interacts with host receptor Hsp60.

Jagadeesan B, Fleishman Littlejohn AE, Amalaradjou MA, Singh AK, Mishra KK, La D, Kihara D, Bhunia AK.

PLoS One. 2011;6(6):e20694. doi: 10.1371/journal.pone.0020694. Epub 2011 Jun 29.

37.

Rapid evolutionary innovation during an Archaean genetic expansion.

David LA, Alm EJ.

Nature. 2011 Jan 6;469(7328):93-6. doi: 10.1038/nature09649. Epub 2010 Dec 19.

PMID:
21170026
38.

Metapopulation structure of Vibrionaceae among coastal marine invertebrates.

Preheim SP, Boucher Y, Wildschutte H, David LA, Veneziano D, Alm EJ, Polz MF.

Environ Microbiol. 2011 Jan;13(1):265-275. doi: 10.1111/j.1462-2920.2010.02328.x. Epub 2010 Sep 1.

PMID:
20819104
39.

Total femoral endoprosthetic replacement following excision of bone tumours.

Sewell MD, Spiegelberg BG, Hanna SA, Aston WJ, Bartlett W, Blunn GW, David LA, Cannon SR, Briggs TW.

J Bone Joint Surg Br. 2009 Nov;91(11):1513-20. doi: 10.1302/0301-620X.91B11.21996.

PMID:
19880899
40.

3D-SURFER: software for high-throughput protein surface comparison and analysis.

La D, Esquivel-Rodríguez J, Venkatraman V, Li B, Sael L, Ueng S, Ahrendt S, Kihara D.

Bioinformatics. 2009 Nov 1;25(21):2843-4. doi: 10.1093/bioinformatics/btp542. Epub 2009 Sep 16.

41.

Sequential outcome following autologous chondrocyte implantation of the knee: a six-year follow-up.

Rogers BA, David LA, Briggs TW.

Int Orthop. 2010 Oct;34(7):959-64. doi: 10.1007/s00264-009-0842-x. Epub 2009 Aug 11.

42.

Five-year clinical results of immediately loaded dental implants using mandibular overdentures.

Alfadda SA, Attard NJ, David LA.

Int J Prosthodont. 2009 Jul-Aug;22(4):368-73.

PMID:
19639074
43.

Outcome and complications of treatment of ankle diastasis with tightrope fixation.

Willmott HJ, Singh B, David LA.

Injury. 2009 Nov;40(11):1204-6. doi: 10.1016/j.injury.2009.05.008. Epub 2009 Jul 22.

PMID:
19625020
44.

Looking for Darwin's footprints in the microbial world.

Shapiro BJ, David LA, Friedman J, Alm EJ.

Trends Microbiol. 2009 May;17(5):196-204. doi: 10.1016/j.tim.2009.02.002. Epub 2009 Apr 15. Review.

PMID:
19375326
45.

A one-stop carpal tunnel clinic.

Reid MJ, David LA, Nicholl JE.

Ann R Coll Surg Engl. 2009 May;91(4):301-4. doi: 10.1308/003588409X391910. Epub 2009 Feb 13.

46.

The importance of pre-contouring a cricket-pad splint to avoid complications.

Atrey A, George M, David LA.

BMJ Case Rep. 2009;2009. pii: bcr11.2008.1192. doi: 10.1136/bcr.11.2008.1192. Epub 2009 Apr 28. No abstract available.

47.

Quantification of cell edge velocities and traction forces reveals distinct motility modules during cell spreading.

Dubin-Thaler BJ, Hofman JM, Cai Y, Xenias H, Spielman I, Shneidman AV, David LA, Döbereiner HG, Wiggins CH, Sheetz MP.

PLoS One. 2008;3(11):e3735. doi: 10.1371/journal.pone.0003735. Epub 2008 Nov 17.

48.

Very late local recurrence of Ewing's sarcoma--can you ever say 'cured'? A report of two cases and literature review.

Hanna SA, David LA, Gikas PD, Tindall AJ, Cannon SR, Briggs TW.

Ann R Coll Surg Engl. 2008 Oct;90(7):W12-5. doi: 10.1308/147870808X303146. Review.

49.

Rapid comparison of properties on protein surface.

Sael L, La D, Li B, Rustamov R, Kihara D.

Proteins. 2008 Oct;73(1):1-10. doi: 10.1002/prot.22141.

50.

Late widespread skeletal metastases from myxoid liposarcoma detected by MRI only.

Hanna SA, Qureshi YA, Bayliss L, David LA, O'Donnell P, Judson IR, Briggs TW.

World J Surg Oncol. 2008 Jun 18;6:62. doi: 10.1186/1477-7819-6-62.

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