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Items: 24

1.

Recombination rate variation shapes barriers to introgression across butterfly genomes.

Martin SH, Davey JW, Salazar C, Jiggins CD.

PLoS Biol. 2019 Feb 7;17(2):e2006288. doi: 10.1371/journal.pbio.2006288. eCollection 2019 Feb.

2.

Sexually dimorphic gene expression and transcriptome evolution provide mixed evidence for a fast-Z effect in Heliconius.

Pinharanda A, Rousselle M, Martin SH, Hanly JJ, Davey JW, Kumar S, Galtier N, Jiggins CD.

J Evol Biol. 2019 Mar;32(3):194-204. doi: 10.1111/jeb.13410. Epub 2019 Jan 11.

PMID:
30523653
3.

No evidence for maintenance of a sympatric Heliconius species barrier by chromosomal inversions.

Davey JW, Barker SL, Rastas PM, Pinharanda A, Martin SH, Durbin R, McMillan WO, Merrill RM, Jiggins CD.

Evol Lett. 2017 Jun 14;1(3):138-154. doi: 10.1002/evl3.12. eCollection 2017 Aug.

4.

The comparative landscape of duplications in Heliconius melpomene and Heliconius cydno.

Pinharanda A, Martin SH, Barker SL, Davey JW, Jiggins CD.

Heredity (Edinb). 2017 Jan;118(1):78-87. doi: 10.1038/hdy.2016.107. Epub 2016 Dec 7.

5.

Cross-tolerance to biotic and abiotic stresses in plants: a focus on resistance to aphid infestation.

Foyer CH, Rasool B, Davey JW, Hancock RD.

J Exp Bot. 2016 Mar;67(7):2025-37. doi: 10.1093/jxb/erw079. Epub 2016 Mar 1. Review.

6.

Formin Is Associated with Left-Right Asymmetry in the Pond Snail and the Frog.

Davison A, McDowell GS, Holden JM, Johnson HF, Koutsovoulos GD, Liu MM, Hulpiau P, Van Roy F, Wade CM, Banerjee R, Yang F, Chiba S, Davey JW, Jackson DJ, Levin M, Blaxter ML.

Curr Biol. 2016 Mar 7;26(5):654-60. doi: 10.1016/j.cub.2015.12.071. Epub 2016 Feb 25.

7.

Major Improvements to the Heliconius melpomene Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution.

Davey JW, Chouteau M, Barker SL, Maroja L, Baxter SW, Simpson F, Merrill RM, Joron M, Mallet J, Dasmahapatra KK, Jiggins CD.

G3 (Bethesda). 2016 Jan 15;6(3):695-708. doi: 10.1534/g3.115.023655. Erratum in: G3 (Bethesda). 2016 May 03;6(5):1489.

8.

The diversification of Heliconius butterflies: what have we learned in 150 years?

Merrill RM, Dasmahapatra KK, Davey JW, Dell'Aglio DD, Hanly JJ, Huber B, Jiggins CD, Joron M, Kozak KM, Llaurens V, Martin SH, Montgomery SH, Morris J, Nadeau NJ, Pinharanda AL, Rosser N, Thompson MJ, Vanjari S, Wallbank RW, Yu Q.

J Evol Biol. 2015 Aug;28(8):1417-38. doi: 10.1111/jeb.12672. Epub 2015 Jul 14. Review.

9.

A conserved set of maternal genes? Insights from a molluscan transcriptome.

Liu MM, Davey JW, Jackson DJ, Blaxter ML, Davison A.

Int J Dev Biol. 2014;58(6-8):501-11. doi: 10.1387/ijdb.140121ad.

10.

Estimation of the spontaneous mutation rate in Heliconius melpomene.

Keightley PD, Pinharanda A, Ness RW, Simpson F, Dasmahapatra KK, Mallet J, Davey JW, Jiggins CD.

Mol Biol Evol. 2015 Jan;32(1):239-43. doi: 10.1093/molbev/msu302. Epub 2014 Nov 3.

11.

Evaluating the use of ABBA-BABA statistics to locate introgressed loci.

Martin SH, Davey JW, Jiggins CD.

Mol Biol Evol. 2015 Jan;32(1):244-57. doi: 10.1093/molbev/msu269. Epub 2014 Sep 22.

12.

Fine mapping of the pond snail left-right asymmetry (chirality) locus using RAD-Seq and fibre-FISH.

Liu MM, Davey JW, Banerjee R, Han J, Yang F, Aboobaker A, Blaxter ML, Davison A.

PLoS One. 2013 Aug 12;8(8):e71067. doi: 10.1371/journal.pone.0071067. eCollection 2013.

13.

Genotyping-by-sequencing in ecological and conservation genomics.

Narum SR, Buerkle CA, Davey JW, Miller MR, Hohenlohe PA.

Mol Ecol. 2013 Jun;22(11):2841-7. doi: 10.1111/mec.12350. Epub 2013 May 25. No abstract available.

14.

RAD-Seq derived markers flank the shell colour and banding loci of the Cepaea nemoralis supergene.

Richards PM, Liu MM, Lowe N, Davey JW, Blaxter ML, Davison A.

Mol Ecol. 2013 Jun;22(11):3077-89. doi: 10.1111/mec.12262. Epub 2013 Mar 15.

15.

Sturgeon conservation genomics: SNP discovery and validation using RAD sequencing.

Ogden R, Gharbi K, Mugue N, Martinsohn J, Senn H, Davey JW, Pourkazemi M, McEwing R, Eland C, Vidotto M, Sergeev A, Congiu L.

Mol Ecol. 2013 Jun;22(11):3112-23. doi: 10.1111/mec.12234. Epub 2013 Mar 8.

PMID:
23473098
16.

A heterozygous moth genome provides insights into herbivory and detoxification.

You M, Yue Z, He W, Yang X, Yang G, Xie M, Zhan D, Baxter SW, Vasseur L, Gurr GM, Douglas CJ, Bai J, Wang P, Cui K, Huang S, Li X, Zhou Q, Wu Z, Chen Q, Liu C, Wang B, Li X, Xu X, Lu C, Hu M, Davey JW, Smith SM, Chen M, Xia X, Tang W, Ke F, Zheng D, Hu Y, Song F, You Y, Ma X, Peng L, Zheng Y, Liang Y, Chen Y, Yu L, Zhang Y, Liu Y, Li G, Fang L, Li J, Zhou X, Luo Y, Gou C, Wang J, Wang J, Yang H, Wang J.

Nat Genet. 2013 Feb;45(2):220-5. doi: 10.1038/ng.2524. Epub 2013 Jan 13.

PMID:
23313953
17.

Special features of RAD Sequencing data: implications for genotyping.

Davey JW, Cezard T, Fuentes-Utrilla P, Eland C, Gharbi K, Blaxter ML.

Mol Ecol. 2013 Jun;22(11):3151-64. doi: 10.1111/mec.12084. Epub 2012 Oct 30.

18.

Genome-wide patterns of divergence and gene flow across a butterfly radiation.

Nadeau NJ, Martin SH, Kozak KM, Salazar C, Dasmahapatra KK, Davey JW, Baxter SW, Blaxter ML, Mallet J, Jiggins CD.

Mol Ecol. 2013 Feb;22(3):814-26. doi: 10.1111/j.1365-294X.2012.05730.x. Epub 2012 Aug 25.

PMID:
22924870
19.

Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon.

Houston RD, Davey JW, Bishop SC, Lowe NR, Mota-Velasco JC, Hamilton A, Guy DR, Tinch AE, Thomson ML, Blaxter ML, Gharbi K, Bron JE, Taggart JB.

BMC Genomics. 2012 Jun 15;13:244. doi: 10.1186/1471-2164-13-244.

20.

The expression and activity of β-catenin in the thalamus and its projections to the cerebral cortex in the mouse embryo.

Pratt T, Davey JW, Nowakowski TJ, Raasumaa C, Rawlik K, McBride D, Clinton M, Mason JO, Price DJ.

BMC Neurosci. 2012 Feb 23;13:20. doi: 10.1186/1471-2202-13-20.

21.

Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing.

Nadeau NJ, Whibley A, Jones RT, Davey JW, Dasmahapatra KK, Baxter SW, Quail MA, Joron M, ffrench-Constant RH, Blaxter ML, Mallet J, Jiggins CD.

Philos Trans R Soc Lond B Biol Sci. 2012 Feb 5;367(1587):343-53. doi: 10.1098/rstb.2011.0198.

22.

Genome-wide genetic marker discovery and genotyping using next-generation sequencing.

Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML.

Nat Rev Genet. 2011 Jun 17;12(7):499-510. doi: 10.1038/nrg3012. Review.

PMID:
21681211
23.

Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism.

Baxter SW, Davey JW, Johnston JS, Shelton AM, Heckel DG, Jiggins CD, Blaxter ML.

PLoS One. 2011 Apr 26;6(4):e19315. doi: 10.1371/journal.pone.0019315.

24.

RADSeq: next-generation population genetics.

Davey JW, Blaxter ML.

Brief Funct Genomics. 2010 Dec;9(5-6):416-23. doi: 10.1093/bfgp/elq031. Erratum in: Brief Funct Genomics. 2011 Mar;10(2):108. Davey, John L [corrected to Davey, John W]; Blaxter, Mark W [corrected to Blaxter, Mark L].

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