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Items: 36

1.

B Cell Diversification Is Uncoupled from SAP-Mediated Selection Forces in Chronic Germinal Centers within Peyer's Patches.

Biram A, Winter E, Denton AE, Zaretsky I, Dassa B, Bemark M, Linterman MA, Yaari G, Shulman Z.

Cell Rep. 2020 Feb 11;30(6):1910-1922.e5. doi: 10.1016/j.celrep.2020.01.032.

2.

Golgi organization is regulated by proteasomal degradation.

Eisenberg-Lerner A, Benyair R, Hizkiahou N, Nudel N, Maor R, Kramer MP, Shmueli MD, Zigdon I, Cherniavsky Lev M, Ulman A, Sagiv JY, Dayan M, Dassa B, Rosenwald M, Shachar I, Li J, Wang Y, Dezorella N, Khan S, Porat Z, Shimoni E, Avinoam O, Merbl Y.

Nat Commun. 2020 Jan 21;11(1):409. doi: 10.1038/s41467-019-14038-9.

3.

Syk degradation restrains plasma cell formation and promotes zonal transitions in germinal centers.

Davidzohn N, Biram A, Stoler-Barak L, Grenov A, Dassa B, Shulman Z.

J Exp Med. 2020 Mar 2;217(3). pii: e20191043. doi: 10.1084/jem.20191043.

PMID:
31873727
4.

The Cellulosome Paradigm in An Extreme Alkaline Environment.

Phitsuwan P, Moraïs S, Dassa B, Henrissat B, Bayer EA.

Microorganisms. 2019 Sep 12;7(9). pii: E347. doi: 10.3390/microorganisms7090347.

5.

Unraveling essential cellulosomal components of the (Pseudo)Bacteroides cellulosolvens reveals an extensive reservoir of novel catalytic enzymes.

Zhivin-Nissan O, Dassa B, Morag E, Kupervaser M, Levin Y, Bayer EA.

Biotechnol Biofuels. 2019 May 9;12:115. doi: 10.1186/s13068-019-1447-2. eCollection 2019.

6.

Revealing the cellular degradome by mass spectrometry analysis of proteasome-cleaved peptides.

Wolf-Levy H, Javitt A, Eisenberg-Lerner A, Kacen A, Ulman A, Sheban D, Dassa B, Fishbain-Yoskovitz V, Carmona-Rivera C, Kramer MP, Nudel N, Regev I, Zahavi L, Elinger D, Kaplan MJ, Morgenstern D, Levin Y, Merbl Y.

Nat Biotechnol. 2018 Oct 22. doi: 10.1038/nbt.4279. [Epub ahead of print]

PMID:
30346940
7.

Methods for Discovery of Novel Cellulosomal Cellulases Using Genomics and Biochemical Tools.

Ben-David Y, Dassa B, Bensoussan L, Bayer EA, Moraïs S.

Methods Mol Biol. 2018;1796:67-84. doi: 10.1007/978-1-4939-7877-9_6.

PMID:
29856047
8.

Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme.

Dassa B, Borovok I, Lombard V, Henrissat B, Lamed R, Bayer EA, Moraïs S.

Microorganisms. 2017 Nov 18;5(4). pii: E74. doi: 10.3390/microorganisms5040074.

9.

How does cellulosome composition influence deconstruction of lignocellulosic substrates in Clostridium (Ruminiclostridium) thermocellum DSM 1313?

Yoav S, Barak Y, Shamshoum M, Borovok I, Lamed R, Dassa B, Hadar Y, Morag E, Bayer EA.

Biotechnol Biofuels. 2017 Sep 18;10:222. doi: 10.1186/s13068-017-0909-7. eCollection 2017.

10.

Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system.

Zhivin O, Dassa B, Moraïs S, Utturkar SM, Brown SD, Henrissat B, Lamed R, Bayer EA.

Biotechnol Biofuels. 2017 Sep 7;10:211. doi: 10.1186/s13068-017-0898-6. eCollection 2017.

11.

Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions.

Israeli-Ruimy V, Bule P, Jindou S, Dassa B, Moraïs S, Borovok I, Barak Y, Slutzki M, Hamberg Y, Cardoso V, Alves VD, Najmudin S, White BA, Flint HJ, Gilbert HJ, Lamed R, Fontes CM, Bayer EA.

Sci Rep. 2017 Feb 10;7:42355. doi: 10.1038/srep42355.

12.

Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome.

Bensoussan L, Moraïs S, Dassa B, Friedman N, Henrissat B, Lombard V, Bayer EA, Mizrahi I.

Environ Microbiol. 2017 Jan;19(1):185-197. doi: 10.1111/1462-2920.13561. Epub 2016 Oct 28.

13.

The Development of a Novel qPCR Assay-Set for Identifying Fecal Contamination Originating from Domestic Fowls and Waterfowl in Israel.

Ohad S, Ben-Dor S, Prilusky J, Kravitz V, Dassa B, Chalifa-Caspi V, Kashi Y, Rorman E.

Front Microbiol. 2016 Feb 17;7:145. doi: 10.3389/fmicb.2016.00145. eCollection 2016.

14.

Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii.

Ze X, Ben David Y, Laverde-Gomez JA, Dassa B, Sheridan PO, Duncan SH, Louis P, Henrissat B, Juge N, Koropatkin NM, Bayer EA, Flint HJ.

mBio. 2015 Sep 29;6(5):e01058-15. doi: 10.1128/mBio.01058-15.

15.

Near-Complete Genome Sequence of the Cellulolytic Bacterium Bacteroides (Pseudobacteroides) cellulosolvens ATCC 35603.

Dassa B, Utturkar S, Hurt RA, Klingeman DM, Keller M, Xu J, Reddy YH, Borovok I, Rozman Grinberg I, Lamed R, Zhivin O, Bayer EA, Brown SD.

Genome Announc. 2015 Sep 24;3(5). pii: e01022-15. doi: 10.1128/genomeA.01022-15.

16.

Ruminococcal cellulosome systems from rumen to human.

Ben David Y, Dassa B, Borovok I, Lamed R, Koropatkin NM, Martens EC, White BA, Bernalier-Donadille A, Duncan SH, Flint HJ, Bayer EA, Moraïs S.

Environ Microbiol. 2015 Sep;17(9):3407-26. doi: 10.1111/1462-2920.12868. Epub 2015 May 7.

17.

Functional phylotyping approach for assessing intraspecific diversity of Ruminococcus albus within the rumen microbiome.

Rozman Grinberg I, Yin G, Borovok I, Berg Miller ME, Yeoman CJ, Dassa B, Yu Z, Mizrahi I, Flint HJ, Bayer EA, White BA, Lamed R.

FEMS Microbiol Lett. 2015 Jan;362(3):1-10. doi: 10.1093/femsle/fnu047. Epub 2014 Dec 22.

18.

Elaborate cellulosome architecture of Acetivibrio cellulolyticus revealed by selective screening of cohesin-dockerin interactions.

Hamberg Y, Ruimy-Israeli V, Dassa B, Barak Y, Lamed R, Cameron K, Fontes CM, Bayer EA, Fried DB.

PeerJ. 2014 Oct 30;2:e636. doi: 10.7717/peerj.636. eCollection 2014.

19.

Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains.

Dassa B, Borovok I, Ruimy-Israeli V, Lamed R, Flint HJ, Duncan SH, Henrissat B, Coutinho P, Morrison M, Mosoni P, Yeoman CJ, White BA, Bayer EA.

PLoS One. 2014 Jul 3;9(7):e99221. doi: 10.1371/journal.pone.0099221. eCollection 2014.

20.

Cellulosomics of the cellulolytic thermophile Clostridium clariflavum.

Artzi L, Dassa B, Borovok I, Shamshoum M, Lamed R, Bayer EA.

Biotechnol Biofuels. 2014 Jul 1;7:100. doi: 10.1186/1754-6834-7-100. eCollection 2014.

21.

Intramolecular clasp of the cellulosomal Ruminococcus flavefaciens ScaA dockerin module confers structural stability.

Slutzki M, Jobby MK, Chitayat S, Karpol A, Dassa B, Barak Y, Lamed R, Smith SP, Bayer EA.

FEBS Open Bio. 2013 Sep 25;3:398-405. doi: 10.1016/j.fob.2013.09.006. eCollection 2013.

22.

Draft Genome Sequence of the Cellulolytic Bacterium Clostridium papyrosolvens C7 (ATCC 700395).

Zepeda V, Dassa B, Borovok I, Lamed R, Bayer EA, Cate JH.

Genome Announc. 2013 Sep 12;1(5). pii: e00698-13. doi: 10.1128/genomeA.00698-13.

23.

Oriented covalent immobilization of antibodies for measurement of intermolecular binding forces between zipper-like contact surfaces of split inteins.

Sorci M, Dassa B, Liu H, Anand G, Dutta AK, Pietrokovski S, Belfort M, Belfort G.

Anal Chem. 2013 Jun 18;85(12):6080-8. doi: 10.1021/ac400949t. Epub 2013 May 31.

24.

Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system.

Dassa B, Borovok I, Lamed R, Henrissat B, Coutinho P, Hemme CL, Huang Y, Zhou J, Bayer EA.

BMC Genomics. 2012 May 30;13:210. doi: 10.1186/1471-2164-13-210.

25.

Glycoside hydrolases as components of putative carbohydrate biosensor proteins in Clostridium thermocellum.

Bahari L, Gilad Y, Borovok I, Kahel-Raifer H, Dassa B, Nataf Y, Shoham Y, Lamed R, Bayer EA.

J Ind Microbiol Biotechnol. 2011 Jul;38(7):825-32. doi: 10.1007/s10295-010-0848-9. Epub 2010 Sep 6.

PMID:
20820855
26.

Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.

Rincon MT, Dassa B, Flint HJ, Travis AJ, Jindou S, Borovok I, Lamed R, Bayer EA, Henrissat B, Coutinho PM, Antonopoulos DA, Berg Miller ME, White BA.

PLoS One. 2010 Aug 30;5(8):e12476. doi: 10.1371/journal.pone.0012476.

27.

Persistent chronic inflammation and infection by Chikungunya arthritogenic alphavirus in spite of a robust host immune response.

Hoarau JJ, Jaffar Bandjee MC, Krejbich Trotot P, Das T, Li-Pat-Yuen G, Dassa B, Denizot M, Guichard E, Ribera A, Henni T, Tallet F, Moiton MP, Gauzère BA, Bruniquet S, Jaffar Bandjee Z, Morbidelli P, Martigny G, Jolivet M, Gay F, Grandadam M, Tolou H, Vieillard V, Debré P, Autran B, Gasque P.

J Immunol. 2010 May 15;184(10):5914-27. doi: 10.4049/jimmunol.0900255. Epub 2010 Apr 19.

28.

Splicing of the mycobacteriophage Bethlehem DnaB intein: identification of a new mechanistic class of inteins that contain an obligate block F nucleophile.

Tori K, Dassa B, Johnson MA, Southworth MW, Brace LE, Ishino Y, Pietrokovski S, Perler FB.

J Biol Chem. 2010 Jan 22;285(4):2515-26. doi: 10.1074/jbc.M109.069567. Epub 2009 Nov 22.

29.

Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family.

Dassa B, London N, Stoddard BL, Schueler-Furman O, Pietrokovski S.

Nucleic Acids Res. 2009 May;37(8):2560-73. doi: 10.1093/nar/gkp095. Epub 2009 Mar 5.

30.

Bacterial intein-like domains of predatory bacteria: a new domain type characterized in Bdellovibrio bacteriovorus.

Dori-Bachash M, Dassa B, Peleg O, Pineiro SA, Jurkevitch E, Pietrokovski S.

Funct Integr Genomics. 2009 May;9(2):153-66. doi: 10.1007/s10142-008-0106-7. Epub 2009 Jan 20.

PMID:
19153786
31.

Proteome-based comparative analyses of growth stages reveal new cell cycle-dependent functions in the predatory bacterium Bdellovibrio bacteriovorus.

Dori-Bachash M, Dassa B, Pietrokovski S, Jurkevitch E.

Appl Environ Microbiol. 2008 Dec;74(23):7152-62. doi: 10.1128/AEM.01736-08. Epub 2008 Oct 3.

32.

Trans protein splicing of cyanobacterial split inteins in endogenous and exogenous combinations.

Dassa B, Amitai G, Caspi J, Schueler-Furman O, Pietrokovski S.

Biochemistry. 2007 Jan 9;46(1):322-30.

PMID:
17198403
33.

New type of polyubiquitin-like genes with intein-like autoprocessing domains.

Dassa B, Yanai I, Pietrokovski S.

Trends Genet. 2004 Nov;20(11):538-42.

PMID:
15475112
34.

Protein splicing and auto-cleavage of bacterial intein-like domains lacking a C'-flanking nucleophilic residue.

Dassa B, Haviv H, Amitai G, Pietrokovski S.

J Biol Chem. 2004 Jul 30;279(31):32001-7. Epub 2004 May 18.

35.

Protein splicing of inteins with atypical glutamine and aspartate C-terminal residues.

Amitai G, Dassa B, Pietrokovski S.

J Biol Chem. 2004 Jan 30;279(5):3121-31. Epub 2003 Oct 30.

36.

Distribution and function of new bacterial intein-like protein domains.

Amitai G, Belenkiy O, Dassa B, Shainskaya A, Pietrokovski S.

Mol Microbiol. 2003 Jan;47(1):61-73.

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