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Items: 9

1.

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences.

Barbera P, Kozlov AM, Czech L, Morel B, Darriba D, Flouri T, Stamatakis A.

Syst Biol. 2019 Mar 1;68(2):365-369. doi: 10.1093/sysbio/syy054.

2.

Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system.

Psonis N, Antoniou A, Karameta E, Leaché AD, Kotsakiozi P, Darriba D, Kozlov A, Stamatakis A, Poursanidis D, Kukushkin O, Jablonski D, Crnobrnja-Isailović J, Gherghel I, Lymberakis P, Poulakakis N.

Mol Phylogenet Evol. 2018 Aug;125:100-115. doi: 10.1016/j.ympev.2018.03.021. Epub 2018 Mar 21.

PMID:
29574273
3.

The State of Software for Evolutionary Biology.

Darriba D, Flouri T, Stamatakis A.

Mol Biol Evol. 2018 May 1;35(5):1037-1046. doi: 10.1093/molbev/msy014. Review.

4.

Does the choice of nucleotide substitution models matter topologically?

Hoff M, Orf S, Riehm B, Darriba D, Stamatakis A.

BMC Bioinformatics. 2016 Mar 24;17:143. doi: 10.1186/s12859-016-0985-x.

5.

Prediction of missing sequences and branch lengths in phylogenomic data.

Darriba D, Weiß M, Stamatakis A.

Bioinformatics. 2016 May 1;32(9):1331-7. doi: 10.1093/bioinformatics/btv768. Epub 2016 Jan 5.

PMID:
26733454
6.

The phylogenetic likelihood library.

Flouri T, Izquierdo-Carrasco F, Darriba D, Aberer AJ, Nguyen LT, Minh BQ, Von Haeseler A, Stamatakis A.

Syst Biol. 2015 Mar;64(2):356-62. doi: 10.1093/sysbio/syu084. Epub 2014 Oct 30.

7.

jmodeltest.org: selection of nucleotide substitution models on the cloud.

Santorum JM, Darriba D, Taboada GL, Posada D.

Bioinformatics. 2014 May 1;30(9):1310-1. doi: 10.1093/bioinformatics/btu032. Epub 2014 Jan 21.

8.

jModelTest 2: more models, new heuristics and parallel computing.

Darriba D, Taboada GL, Doallo R, Posada D.

Nat Methods. 2012 Jul 30;9(8):772. doi: 10.1038/nmeth.2109. No abstract available.

9.

ProtTest 3: fast selection of best-fit models of protein evolution.

Darriba D, Taboada GL, Doallo R, Posada D.

Bioinformatics. 2011 Apr 15;27(8):1164-5. doi: 10.1093/bioinformatics/btr088. Epub 2011 Feb 17.

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