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Items: 24

1.

A phylogenetic model for the recruitment of species into microbial communities and application to studies of the human microbiome.

Darcy JL, Washburne AD, Robeson MS, Prest T, Schmidt SK, Lozupone CA.

ISME J. 2020 Feb 19. doi: 10.1038/s41396-020-0613-7. [Epub ahead of print]

PMID:
32076128
2.

Single-Stranded DNA Viruses in Antarctic Cryoconite Holes.

Sommers P, Fontenele RS, Kringen T, Kraberger S, Porazinska DL, Darcy JL, Schmidt SK, Varsani A.

Viruses. 2019 Nov 4;11(11). pii: E1022. doi: 10.3390/v11111022.

3.

Structure of bacterial and eukaryote communities reflect in situ controls on community assembly in a high-alpine lake.

Gendron EMS, Darcy JL, Hell K, Schmidt SK.

J Microbiol. 2019 Oct;57(10):852-864. doi: 10.1007/s12275-019-8668-8. Epub 2019 Aug 3.

PMID:
31376109
4.

The disappearing periglacial ecosystem atop Mt. Kilimanjaro supports both cosmopolitan and endemic microbial communities.

Vimercati L, Darcy JL, Schmidt SK.

Sci Rep. 2019 Jul 23;9(1):10676. doi: 10.1038/s41598-019-46521-0.

5.

Targeted ITS1 sequencing unravels the mycodiversity of deep-sea sediments from the Gulf of Mexico.

Vargas-Gastélum L, Chong-Robles J, Lago-Lestón A, Darcy JL, Amend AS, Riquelme M.

Environ Microbiol. 2019 Nov;21(11):4046-4061. doi: 10.1111/1462-2920.14754. Epub 2019 Aug 5.

PMID:
31336033
6.

A Developing Symbiosis: Enabling Cross-Talk Between Ecologists and Microbiome Scientists.

Tipton L, Darcy JL, Hynson NA.

Front Microbiol. 2019 Feb 20;10:292. doi: 10.3389/fmicb.2019.00292. eCollection 2019. Review.

7.

Comparison of Microbial Communities in the Sediments and Water Columns of Frozen Cryoconite Holes in the McMurdo Dry Valleys, Antarctica.

Sommers P, Darcy JL, Porazinska DL, Gendron EMS, Fountain AG, Zamora F, Vincent K, Cawley KM, Solon AJ, Vimercati L, Ryder J, Schmidt SK.

Front Microbiol. 2019 Feb 4;10:65. doi: 10.3389/fmicb.2019.00065. eCollection 2019.

8.

A Naganishia in high places: functioning populations or dormant cells from the atmosphere?

Schmidt SK, Vimercati L, Darcy JL, Arán P, Gendron EMS, Solon AJ, Porazinska D, Dorador C.

Mycology. 2017 Jul 12;8(3):153-163. doi: 10.1080/21501203.2017.1344154. eCollection 2017.

9.

Phosphorus, not nitrogen, limits plants and microbial primary producers following glacial retreat.

Darcy JL, Schmidt SK, Knelman JE, Cleveland CC, Castle SC, Nemergut DR.

Sci Adv. 2018 May 23;4(5):eaaq0942. doi: 10.1126/sciadv.aaq0942. eCollection 2018 May.

10.

Life at extreme elevations on Atacama volcanoes: the closest thing to Mars on Earth?

Schmidt SK, Gendron EMS, Vincent K, Solon AJ, Sommers P, Schubert ZR, Vimercati L, Porazinska DL, Darcy JL, Sowell P.

Antonie Van Leeuwenhoek. 2018 Aug;111(8):1389-1401. doi: 10.1007/s10482-018-1066-0. Epub 2018 Mar 20. Review.

PMID:
29557533
11.

Temporal dynamics of gut microbiota in triclocarban-exposed weaned rats.

Kennedy RC, Fling RR, Robeson MS, Saxton AM, Schneider LG, Darcy JL, Bemis DA, Zhao L, Chen J.

Environ Sci Pollut Res Int. 2018 May;25(15):14743-14751. doi: 10.1007/s11356-018-1627-9. Epub 2018 Mar 13.

PMID:
29536423
12.

Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra "Soils" of the Puna de Atacama Volcanic Zone.

Solon AJ, Vimercati L, Darcy JL, Arán P, Porazinska D, Dorador C, Farías ME, Schmidt SK.

Microb Ecol. 2018 Aug;76(2):340-351. doi: 10.1007/s00248-017-1129-1. Epub 2018 Jan 5.

PMID:
29305629
13.

Diversity patterns of microbial eukaryotes mirror those of bacteria in Antarctic cryoconite holes.

Sommers P, Darcy JL, Gendron EMS, Stanish LF, Bagshaw EA, Porazinska DL, Schmidt SK.

FEMS Microbiol Ecol. 2018 Jan 1;94(1). doi: 10.1093/femsec/fix167.

PMID:
29228256
14.

Spatial autocorrelation of microbial communities atop a debris-covered glacier is evidence of a supraglacial chronosequence.

Darcy JL, King AJ, Gendron EMS, Schmidt SK.

FEMS Microbiol Ecol. 2017 Aug 1;93(8). doi: 10.1093/femsec/fix095.

PMID:
28830070
15.

Freeze-thaw revival of rotifers and algae in a desiccated, high-elevation (5500 meters) microbial mat, high Andes, Perú.

Schmidt SK, Darcy JL, Sommers P, Gunawan E, Knelman JE, Yager K.

Extremophiles. 2017 May;21(3):573-580. doi: 10.1007/s00792-017-0926-2. Epub 2017 Mar 21.

PMID:
28321614
16.

Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets.

Washburne AD, Silverman JD, Leff JW, Bennett DJ, Darcy JL, Mukherjee S, Fierer N, David LA.

PeerJ. 2017 Feb 9;5:e2969. doi: 10.7717/peerj.2969. eCollection 2017.

17.

Temporal Development of Gut Microbiota in Triclocarban Exposed Pregnant and Neonatal Rats.

Kennedy RC, Fling RR, Robeson MS, Saxton AM, Donnell RL, Darcy JL, Bemis DA, Liu J, Zhao L, Chen J.

Sci Rep. 2016 Sep 20;6:33430. doi: 10.1038/srep33430.

18.

Decreases in average bacterial community rRNA operon copy number during succession.

Nemergut DR, Knelman JE, Ferrenberg S, Bilinski T, Melbourne B, Jiang L, Violle C, Darcy JL, Prest T, Schmidt SK, Townsend AR.

ISME J. 2016 May;10(5):1147-56. doi: 10.1038/ismej.2015.191. Epub 2015 Nov 13.

19.

Metagenomic evidence for metabolism of trace atmospheric gases by high-elevation desert Actinobacteria.

Lynch RC, Darcy JL, Kane NC, Nemergut DR, Schmidt SK.

Front Microbiol. 2014 Dec 17;5:698. doi: 10.3389/fmicb.2014.00698. eCollection 2014.

20.

Nutrient addition dramatically accelerates microbial community succession.

Knelman JE, Schmidt SK, Lynch RC, Darcy JL, Castle SC, Cleveland CC, Nemergut DR.

PLoS One. 2014 Jul 22;9(7):e102609. doi: 10.1371/journal.pone.0102609. eCollection 2014.

21.

Do bacterial and fungal communities assemble differently during primary succession?

Schmidt SK, Nemergut DR, Darcy JL, Lynch R.

Mol Ecol. 2014 Feb;23(2):254-8. doi: 10.1111/mec.12589.

PMID:
26010467
22.

Patterns and processes of microbial community assembly.

Nemergut DR, Schmidt SK, Fukami T, O'Neill SP, Bilinski TM, Stanish LF, Knelman JE, Darcy JL, Lynch RC, Wickey P, Ferrenberg S.

Microbiol Mol Biol Rev. 2013 Sep;77(3):342-56. doi: 10.1128/MMBR.00051-12. Review.

23.

Phylogeny and biogeography of an uncultured clade of snow chytrids.

Naff CS, Darcy JL, Schmidt SK.

Environ Microbiol. 2013 Oct;15(10):2672-80. doi: 10.1111/1462-2920.12116. Epub 2013 Apr 2.

PMID:
23551529
24.

Global distribution of Polaromonas phylotypes--evidence for a highly successful dispersal capacity.

Darcy JL, Lynch RC, King AJ, Robeson MS, Schmidt SK.

PLoS One. 2011;6(8):e23742. doi: 10.1371/journal.pone.0023742. Epub 2011 Aug 29.

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