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Items: 8

1.

Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads.

Darby CA, Fitch JR, Brennan PJ, Kelly BJ, Bir N, Magrini V, Leonard J, Cottrell CE, Gastier-Foster JM, Wilson RK, Mardis ER, White P, Langmead B, Schatz MC.

iScience. 2019 Aug 30;18:1-10. doi: 10.1016/j.isci.2019.05.037. Epub 2019 May 29.

2.

Piercing the dark matter: bioinformatics of long-range sequencing and mapping.

Sedlazeck FJ, Lee H, Darby CA, Schatz MC.

Nat Rev Genet. 2018 Jun;19(6):329-346. doi: 10.1038/s41576-018-0003-4. Review.

PMID:
29599501
3.

LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning.

Luo R, Sedlazeck FJ, Darby CA, Kelly SM, Schatz MC.

Comput Struct Biotechnol J. 2017 Nov 9;15:478-484. doi: 10.1016/j.csbj.2017.10.002. eCollection 2017.

4.

Elicitation of Protective Antibodies against a Broad Panel of H1N1 Viruses in Ferrets Preimmune to Historical H1N1 Influenza Viruses.

Carter DM, Darby CA, Johnson SK, Carlock MA, Kirchenbaum GA, Allen JD, Vogel TU, Delagrave S, DiNapoli J, Kleanthous H, Ross TM.

J Virol. 2017 Nov 30;91(24). pii: e01283-17. doi: 10.1128/JVI.01283-17. Print 2017 Dec 15.

5.

Xenolog classification.

Darby CA, Stolzer M, Ropp PJ, Barker D, Durand D.

Bioinformatics. 2017 Mar 1;33(5):640-649. doi: 10.1093/bioinformatics/btw686.

6.

Design and Characterization of a Computationally Optimized Broadly Reactive Hemagglutinin Vaccine for H1N1 Influenza Viruses.

Carter DM, Darby CA, Lefoley BC, Crevar CJ, Alefantis T, Oomen R, Anderson SF, Strugnell T, Cort├ęs-Garcia G, Vogel TU, Parrington M, Kleanthous H, Ross TM.

J Virol. 2016 Apr 14;90(9):4720-4734. doi: 10.1128/JVI.03152-15. Print 2016 May.

7.

The myth of secure computing.

Austin RD, Darby CA.

Harv Bus Rev. 2003 Jun;81(6):120-6, 138.

PMID:
12800722
8.

Recruitment experience in clinical trials: literature summary and annotated bibliography.

Hunninghake DB, Darby CA, Probstfield JL.

Control Clin Trials. 1987 Dec;8(4 Suppl):6S-30S. Review.

PMID:
3326716

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