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Items: 1 to 50 of 279

1.

Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization.

Salazar AN, Gorter de Vries AR, van den Broek M, Brouwers N, de la Torre Cortès P, Kuijpers NGA, Daran JG, Abeel T.

BMC Genomics. 2019 Dec 2;20(1):916. doi: 10.1186/s12864-019-6263-3.

2.

Connecting central carbon and aromatic amino acid metabolisms to improve de novo 2-phenylethanol production in Saccharomyces cerevisiae.

Hassing EJ, de Groot PA, Marquenie VR, Pronk JT, Daran JG.

Metab Eng. 2019 Dec;56:165-180. doi: 10.1016/j.ymben.2019.09.011. Epub 2019 Sep 28.

3.

Lager-brewing yeasts in the era of modern genetics.

Gorter de Vries AR, Pronk JT, Daran JG.

FEMS Yeast Res. 2019 Nov 1;19(7). pii: foz063. doi: 10.1093/femsyr/foz063.

4.

Himalayan Saccharomyces eubayanus Genome Sequences Reveal Genetic Markers Explaining Heterotic Maltotriose Consumption by Saccharomyces pastorianus Hybrids.

Brouwers N, Brickwedde A, Gorter de Vries AR, van den Broek M, Weening SM, van den Eijnden L, Diderich JA, Bai FY, Pronk JT, Daran JG.

Appl Environ Microbiol. 2019 Oct 30;85(22). pii: e01516-19. doi: 10.1128/AEM.01516-19. Print 2019 Nov 15.

5.

Synthesis of S-Alkyl Phosphinocarbodithioates with Switch between P(III) and P(V) Derivatives.

Karpus A, Daran JC, Poli R, Mazières S, Destarac MA, Manoury E.

J Org Chem. 2019 Aug 2;84(15):9446-9453. doi: 10.1021/acs.joc.9b00590. Epub 2019 Jul 17.

PMID:
31272149
6.

Biological Parts for Kluyveromyces marxianus Synthetic Biology.

Rajkumar AS, Varela JA, Juergens H, Daran JG, Morrissey JP.

Front Bioeng Biotechnol. 2019 May 7;7:97. doi: 10.3389/fbioe.2019.00097. eCollection 2019.

7.

Crystal structure of penta-carbon-yl(2,2-di-fluoro-propane-thio-ato-κS)manganese(I).

Daran JC, Morales-Cerrada R, Fliedel C, Gayet F, Ladmiral V, Ameduri B, Poli R.

Acta Crystallogr E Crystallogr Commun. 2019 Apr 2;75(Pt 5):529-532. doi: 10.1107/S2056989019004134. eCollection 2019 May 1.

8.

Phenotype-Independent Isolation of Interspecies Saccharomyces Hybrids by Dual-Dye Fluorescent Staining and Fluorescence-Activated Cell Sorting.

Gorter de Vries AR, Koster CC, Weening SM, Luttik MAH, Kuijpers NGA, Geertman JA, Pronk JT, Daran JG.

Front Microbiol. 2019 Apr 26;10:871. doi: 10.3389/fmicb.2019.00871. eCollection 2019.

9.

Multiplex genome editing of microorganisms using CRISPR-Cas.

Adiego-Pérez B, Randazzo P, Daran JM, Verwaal R, Roubos JA, Daran-Lapujade P, van der Oost J.

FEMS Microbiol Lett. 2019 Apr 1;366(8). pii: fnz086. doi: 10.1093/femsle/fnz086.

10.

A triangular palladium(II) supramolecular coordination complex based on 1,4-bis(1H-imidazol-1-yl)benzene and (2,2'-bipyridyl)palladium(II) nitrate: synthesis and crystal structure.

Daran JC, Gimeno N, Gouygou M, Volkman J.

Acta Crystallogr C Struct Chem. 2019 May 1;75(Pt 5):523-528. doi: 10.1107/S2053229619004212. Epub 2019 Apr 8.

PMID:
31062708
11.

Toward Developing a Yeast Cell Factory for the Production of Prenylated Flavonoids.

Levisson M, Araya-Cloutier C, de Bruijn WJC, van der Heide M, Salvador López JM, Daran JM, Vincken JP, Beekwilder J.

J Agric Food Chem. 2019 May 2. doi: 10.1021/acs.jafc.9b01367. [Epub ahead of print]

PMID:
31016981
12.

Laboratory Evolution of a Saccharomyces cerevisiae × S. eubayanus Hybrid Under Simulated Lager-Brewing Conditions.

Gorter de Vries AR, Voskamp MA, van Aalst ACA, Kristensen LH, Jansen L, van den Broek M, Salazar AN, Brouwers N, Abeel T, Pronk JT, Daran JG.

Front Genet. 2019 Mar 29;10:242. doi: 10.3389/fgene.2019.00242. eCollection 2019.

13.

In vivo recombination of Saccharomyces eubayanus maltose-transporter genes yields a chimeric transporter that enables maltotriose fermentation.

Brouwers N, Gorter de Vries AR, van den Broek M, Weening SM, Elink Schuurman TD, Kuijpers NGA, Pronk JT, Daran JG.

PLoS Genet. 2019 Apr 4;15(4):e1007853. doi: 10.1371/journal.pgen.1007853. eCollection 2019 Apr.

14.

The Genetic Makeup and Expression of the Glycolytic and Fermentative Pathways Are Highly Conserved Within the Saccharomyces Genus.

Boonekamp FJ, Dashko S, van den Broek M, Gehrmann T, Daran JM, Daran-Lapujade P.

Front Genet. 2018 Nov 16;9:504. doi: 10.3389/fgene.2018.00504. eCollection 2018.

15.

Allele-specific genome editing using CRISPR-Cas9 is associated with loss of heterozygosity in diploid yeast.

Gorter de Vries AR, Couwenberg LGF, van den Broek M, de la Torre Cortés P, Ter Horst J, Pronk JT, Daran JG.

Nucleic Acids Res. 2019 Feb 20;47(3):1362-1372. doi: 10.1093/nar/gky1216.

16.

New polysubstituted monoterpenic thiazolidinones: synthesis, spectroscopic and crystal structure studies.

N'ait Ousidi A, Ait Itto MY, Auhmani A, Riahi A, Robert A, Auhmani A, Daran JC.

Acta Crystallogr C Struct Chem. 2018 Dec 1;74(Pt 12):1629-1634. doi: 10.1107/S2053229618015802. Epub 2018 Nov 13.

PMID:
30516146
17.

A toolkit for rapid CRISPR-SpCas9 assisted construction of hexose-transport-deficient Saccharomyces cerevisiae strains.

Wijsman M, Swiat MA, Marques WL, Hettinga JK, van den Broek M, Torre Cortés P, Mans R, Pronk JT, Daran JM, Daran-Lapujade P.

FEMS Yeast Res. 2019 Jan 1;19(1). doi: 10.1093/femsyr/foy107.

18.

Fluoroalkyl Radical Generation by Homolytic Bond Dissociation in Pentacarbonylmanganese Derivatives.

Morales-Cerrada R, Fliedel C, Daran JC, Gayet F, Ladmiral V, Améduri B, Poli R.

Chemistry. 2019 Jan 2;25(1):296-308. doi: 10.1002/chem.201804007. Epub 2018 Dec 13.

PMID:
30230633
19.

Structural, Physiological and Regulatory Analysis of Maltose Transporter Genes in Saccharomyces eubayanus CBS 12357T.

Brickwedde A, Brouwers N, van den Broek M, Gallego Murillo JS, Fraiture JL, Pronk JT, Daran JG.

Front Microbiol. 2018 Aug 10;9:1786. doi: 10.3389/fmicb.2018.01786. eCollection 2018.

20.

A strongly fluorescent NiII complex with 2-(2-hy-droxy-eth-yl)pyridine ligands: synthesis, characterization and theoretical analysis and comparison with a related polymeric CuII complex.

Zeghouan O, Dems MA, Sellami S, Merazig H, Daran JC.

Acta Crystallogr E Crystallogr Commun. 2018 Jul 6;74(Pt 8):1042-1048. doi: 10.1107/S2056989018009301. eCollection 2018 Aug 1.

21.

Selection of Pof-Saccharomyces eubayanus Variants for the Construction of S. cerevisiae × S. eubayanus Hybrids With Reduced 4-Vinyl Guaiacol Formation.

Diderich JA, Weening SM, van den Broek M, Pronk JT, Daran JG.

Front Microbiol. 2018 Jul 27;9:1640. doi: 10.3389/fmicb.2018.01640. eCollection 2018.

22.

Fermentation of glucose-xylose-arabinose mixtures by a synthetic consortium of single-sugar-fermenting Saccharomyces cerevisiae strains.

Verhoeven MD, de Valk SC, Daran JG, van Maris AJA, Pronk JT.

FEMS Yeast Res. 2018 Dec 1;18(8). doi: 10.1093/femsyr/foy075.

PMID:
30010916
23.

Engineering de novo anthocyanin production in Saccharomyces cerevisiae.

Levisson M, Patinios C, Hein S, de Groot PA, Daran JM, Hall RD, Martens S, Beekwilder J.

Microb Cell Fact. 2018 Jul 3;17(1):103. doi: 10.1186/s12934-018-0951-6.

24.

Laboratory evolution of a glucose-phosphorylation-deficient, arabinose-fermenting S. cerevisiae strain reveals mutations in GAL2 that enable glucose-insensitive l-arabinose uptake.

Verhoeven MD, Bracher JM, Nijland JG, Bouwknegt J, Daran JG, Driessen AJM, van Maris AJA, Pronk JT.

FEMS Yeast Res. 2018 Sep 1;18(6). doi: 10.1093/femsyr/foy062.

25.

A protocol for introduction of multiple genetic modifications in Saccharomyces cerevisiae using CRISPR/Cas9.

Mans R, Wijsman M, Daran-Lapujade P, Daran JM.

FEMS Yeast Res. 2018 Nov 1;18(7). doi: 10.1093/femsyr/foy063.

26.

The crystal structure of a new ferrocenyl P,N ligand: 1-[(2,2-di-methyl-hydrazin-1-yl-idene)meth-yl]-1'-(di-phenyl-phospho-rothio-yl)ferrocene.

Mouas TN, Daran JC, Merazig H, Manoury E.

Acta Crystallogr E Crystallogr Commun. 2018 Jan 12;74(Pt 2):133-136. doi: 10.1107/S2056989018000440. eCollection 2018 Feb 1.

27.

Crystal structure of 2-isopropyl-4-meth-oxy-5-methyl-phenyl 4-methyl-benzene-sulfonate.

Laamari Y, Auhmani A, Ait Itto MY, Daran JC, Auhmani A, Kouili M.

Acta Crystallogr E Crystallogr Commun. 2018 Feb 28;74(Pt 3):419-421. doi: 10.1107/S2056989018003110. eCollection 2018 Mar 1.

28.

The Penicillium chrysogenum transporter PcAraT enables high-affinity, glucose-insensitive l-arabinose transport in Saccharomyces cerevisiae.

Bracher JM, Verhoeven MD, Wisselink HW, Crimi B, Nijland JG, Driessen AJM, Klaassen P, van Maris AJA, Daran JG, Pronk JT.

Biotechnol Biofuels. 2018 Mar 13;11:63. doi: 10.1186/s13068-018-1047-6. eCollection 2018.

29.

Genome editing in Kluyveromyces and Ogataea yeasts using a broad-host-range Cas9/gRNA co-expression plasmid.

Juergens H, Varela JA, Gorter de Vries AR, Perli T, Gast VJM, Gyurchev NY, Rajkumar AS, Mans R, Pronk JT, Morrissey JP, Daran JG.

FEMS Yeast Res. 2018 May 1;18(3). doi: 10.1093/femsyr/foy012.

30.

Synthesis of an Enantiomerically Pure Inherently Chiral Calix[4]Arene Phosphonic Acid and Its Evaluation as an Organocatalyst.

Karpus A, Yesypenko O, Boiko V, Daran JC, Voitenko Z, Kalchenko V, Manoury E.

J Org Chem. 2018 Feb 2;83(3):1146-1153. doi: 10.1021/acs.joc.7b02312. Epub 2018 Jan 24.

PMID:
29323909
31.

Synthesis and Characterization of the Most Active Copper ATRP Catalyst Based on Tris[(4-dimethylaminopyridyl)methyl]amine.

Ribelli TG, Fantin M, Daran JC, Augustine KF, Poli R, Matyjaszewski K.

J Am Chem Soc. 2018 Jan 31;140(4):1525-1534. doi: 10.1021/jacs.7b12180. Epub 2018 Jan 22.

PMID:
29320170
32.

Crystal structure, thermal and fluorescence properties of 2,2':6',2''-terpyridine-1,1',1''-triium tetra-chlorido-nickelate(II) chloride.

Zeghouan O, Bendjeddou L, Merazig H, Daran JC.

Acta Crystallogr E Crystallogr Commun. 2017 Nov 28;73(Pt 12):1937-1941. doi: 10.1107/S2056989017016784. eCollection 2017 Dec 1.

33.

CRISPR-Cas9 mediated gene deletions in lager yeast Saccharomyces pastorianus.

Gorter de Vries AR, de Groot PA, van den Broek M, Daran JG.

Microb Cell Fact. 2017 Dec 5;16(1):222. doi: 10.1186/s12934-017-0835-1.

34.

Triangles and Squares for a Unique Molecular Crystal Structure: Unsupported Two-Coordinate Lithium Cations and CC Agostic Interactions in Cyclopropyllithium Derivatives.

Dufrois Q, Daran JC, Vendier L, Dinoi C, Etienne M.

Angew Chem Int Ed Engl. 2018 Feb 12;57(7):1786-1791. doi: 10.1002/anie.201711426. Epub 2017 Dec 21.

PMID:
29205730
35.

Combined engineering of disaccharide transport and phosphorolysis for enhanced ATP yield from sucrose fermentation in Saccharomyces cerevisiae.

Marques WL, Mans R, Henderson RK, Marella ER, Horst JT, Hulster E, Poolman B, Daran JM, Pronk JT, Gombert AK, van Maris AJA.

Metab Eng. 2018 Jan;45:121-133. doi: 10.1016/j.ymben.2017.11.012. Epub 2017 Dec 2.

PMID:
29196124
36.

Under pressure: evolutionary engineering of yeast strains for improved performance in fuels and chemicals production.

Mans R, Daran JG, Pronk JT.

Curr Opin Biotechnol. 2018 Apr;50:47-56. doi: 10.1016/j.copbio.2017.10.011. Epub 2017 Nov 20. Review.

37.

A CRISPR/Cas9-based exploration into the elusive mechanism for lactate export in Saccharomyces cerevisiae.

Mans R, Hassing EJ, Wijsman M, Giezekamp A, Pronk JT, Daran JM, van Maris AJA.

FEMS Yeast Res. 2017 Dec 1;17(8). doi: 10.1093/femsyr/fox085.

PMID:
29145596
38.

FnCpf1: a novel and efficient genome editing tool for Saccharomyces cerevisiae.

Swiat MA, Dashko S, den Ridder M, Wijsman M, van der Oost J, Daran JM, Daran-Lapujade P.

Nucleic Acids Res. 2017 Dec 1;45(21):12585-12598. doi: 10.1093/nar/gkx1007.

39.

Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D.

Salazar AN, Gorter de Vries AR, van den Broek M, Wijsman M, de la Torre Cortés P, Brickwedde A, Brouwers N, Daran JG, Abeel T.

FEMS Yeast Res. 2017 Nov 1;17(7). doi: 10.1093/femsyr/fox074.

40.

Evolutionary Engineering in Chemostat Cultures for Improved Maltotriose Fermentation Kinetics in Saccharomyces pastorianus Lager Brewing Yeast.

Brickwedde A, van den Broek M, Geertman JA, Magalhães F, Kuijpers NGA, Gibson B, Pronk JT, Daran JG.

Front Microbiol. 2017 Sep 8;8:1690. doi: 10.3389/fmicb.2017.01690. eCollection 2017.

41.

Laboratory Evolution of a Biotin-Requiring Saccharomyces cerevisiae Strain for Full Biotin Prototrophy and Identification of Causal Mutations.

Bracher JM, de Hulster E, Koster CC, van den Broek M, Daran JG, van Maris AJA, Pronk JT.

Appl Environ Microbiol. 2017 Aug 1;83(16). pii: e00892-17. doi: 10.1128/AEM.00892-17. Print 2017 Aug 15.

42.

Selective synthesis of (3-ferrocenylprop-2-en-1-yl)triphenylphosphonium iodide: crystal structure determination of two polymorphs.

Bouchene R, Daran JC, Merazig H, Manoury E, Bouacida S.

Acta Crystallogr C Struct Chem. 2017 May 1;73(Pt 5):376-381. doi: 10.1107/S2053229617004867. Epub 2017 Apr 10.

PMID:
28469063
43.

Crystal and mol-ecular structure of (2Z,5Z)-3-(2-meth-oxy-phen-yl)-2-[(2-meth-oxy-phen-yl)imino]-5-(4-nitro-benzyl-idene)thia-zolidin-4-one.

Djafri A, Chouaih A, Daran JC, Djafri A, Hamzaoui F.

Acta Crystallogr E Crystallogr Commun. 2017 Mar 14;73(Pt 4):511-514. doi: 10.1107/S2056989017003218. eCollection 2017 Apr 1.

44.

Membrane potential independent transport of NH3 in the absence of ammonium permeases in Saccharomyces cerevisiae.

Cueto-Rojas HF, Milne N, van Helmond W, Pieterse MM, van Maris AJA, Daran JM, Wahl SA.

BMC Syst Biol. 2017 Apr 17;11(1):49. doi: 10.1186/s12918-016-0381-1.

45.

Mutations in PMR1 stimulate xylose isomerase activity and anaerobic growth on xylose of engineered Saccharomyces cerevisiae by influencing manganese homeostasis.

Verhoeven MD, Lee M, Kamoen L, van den Broek M, Janssen DB, Daran JG, van Maris AJ, Pronk JT.

Sci Rep. 2017 Apr 12;7:46155. doi: 10.1038/srep46155.

46.

Industrial Relevance of Chromosomal Copy Number Variation in Saccharomyces Yeasts.

Gorter de Vries AR, Pronk JT, Daran JG.

Appl Environ Microbiol. 2017 May 17;83(11). pii: e03206-16. doi: 10.1128/AEM.03206-16. Print 2017 Jun 1. Review.

47.

Crystal structure of dimethyl 2-((2Z,5Z)-5-(2-meth-oxy-2-oxo-ethyl-idene)-2-{(E)-[2-methyl-5-(prop-1-en-2-yl)cyclo-hex-2-enyl-idene]hydrazinyl-idene}-4-oxo-thia-zolidin-3-yl)fumarate.

N'ait Ousidi A, Ait Itto MY, Auhmani A, Riahi A, Auhmani A, Daran JC.

Acta Crystallogr E Crystallogr Commun. 2017 Jan 31;73(Pt 2):296-299. doi: 10.1107/S2056989017001190. eCollection 2017 Feb 1.

48.

Elimination of sucrose transport and hydrolysis in Saccharomyces cerevisiae: a platform strain for engineering sucrose metabolism.

Marques WL, Mans R, Marella ER, Cordeiro RL, van den Broek M, Daran JG, Pronk JT, Gombert AK, van Maris AJ.

FEMS Yeast Res. 2017 Jan 1;17(1). doi: 10.1093/femsyr/fox006.

49.

Pathway swapping: Toward modular engineering of essential cellular processes.

Kuijpers NG, Solis-Escalante D, Luttik MA, Bisschops MM, Boonekamp FJ, van den Broek M, Pronk JT, Daran JM, Daran-Lapujade P.

Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15060-15065. doi: 10.1073/pnas.1606701113. Epub 2016 Dec 12.

50.

Crystal structure of (1S,3R,8R,9R)-2,2-di-chloro-3,7,7-tri-methyl-10-methylenetri-cyclo-[6.4.0.0(1,3)]dodecan-9-ol.

Benzalim A, Auhmani A, Bimoussa A, Ait Itto MY, Daran JC, Auhmani A.

Acta Crystallogr E Crystallogr Commun. 2016 Jul 22;72(Pt 8):1163-6. doi: 10.1107/S2056989016011166. eCollection 2016 Aug 1.

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