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Items: 1 to 50 of 103

1.

Prognostic factors among critically ill patients with community-acquired acute bacterial meningitis and acute kidney injury.

Parente Filho SLA, Lima LMB, Dantas GLA, Silva DA, Rolim VM, Oliveira Filho AMP, Melo ITVE, Silva Junior GBD, Daher EF.

Rev Bras Ter Intensiva. 2018 Apr-Jun;30(2):153-159. doi: 10.5935/0103-507X.20180030. Portuguese, English.

2.

Characterization of Wild and Captive Baboon Gut Microbiota and Their Antibiotic Resistomes.

Tsukayama P, Boolchandani M, Patel S, Pehrsson EC, Gibson MK, Chiou KL, Jolly CJ, Rogers J, Phillips-Conroy JE, Dantas G.

mSystems. 2018 Jun 26;3(3). pii: e00016-18. doi: 10.1128/mSystems.00016-18. eCollection 2018 May-Jun.

3.

Close Encounters of Three Kinds: Bacteriophages, Commensal Bacteria, and Host Immunity.

Keen EC, Dantas G.

Trends Microbiol. 2018 Jun 13. pii: S0966-842X(18)30113-6. doi: 10.1016/j.tim.2018.05.009. [Epub ahead of print] Review.

PMID:
29909042
4.

Chinstrap penguin population genetic structure: one or more populations along the Southern Ocean?

Mura-Jornet I, Pimentel C, Dantas GPM, Petry MV, González-Acuña D, Barbosa A, Lowther AD, Kovacs KM, Poulin E, Vianna JA.

BMC Evol Biol. 2018 Jun 13;18(1):90. doi: 10.1186/s12862-018-1207-0.

5.

Shared strategies for β-lactam catabolism in the soil microbiome.

Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G.

Nat Chem Biol. 2018 Jun;14(6):556-564. doi: 10.1038/s41589-018-0052-1. Epub 2018 Apr 30.

PMID:
29713061
6.

Checkpoint Checkmate: Microbiota Modulation of Cancer Immunotherapy.

Keen EC, Crofts TS, Dantas G.

Clin Chem. 2018 Apr 24. pii: clinchem.2017.286229. doi: 10.1373/clinchem.2017.286229. [Epub ahead of print] No abstract available.

PMID:
29691222
7.

Multiscale Evolutionary Dynamics of Host-Associated Microbiomes.

Ferreiro A, Crook N, Gasparrini AJ, Dantas G.

Cell. 2018 Mar 8;172(6):1216-1227. doi: 10.1016/j.cell.2018.02.015. Review.

PMID:
29522743
8.

blaIMP-27 on transferable plasmids in Proteus mirabilis and Providencia rettgeri.

Potter RF, Wallace MA, McMullen AR, Prusa J, Stallings CL, Burnham CAD, Dantas G.

Clin Microbiol Infect. 2018 Mar 1. pii: S1198-743X(18)30193-9. doi: 10.1016/j.cmi.2018.02.018. [Epub ahead of print]

PMID:
29496594
9.

Landscape genomics: natural selection drives the evolution of mitogenome in penguins.

Ramos B, González-Acuña D, Loyola DE, Johnson WE, Parker PG, Massaro M, Dantas GPM, Miranda MD, Vianna JA.

BMC Genomics. 2018 Jan 16;19(1):53. doi: 10.1186/s12864-017-4424-9.

10.

Monopelopia Fittkau, 1962 (Diptera: Chironomidae) from the Neotropical region: five new species, new records and updated keys.

Dantas GPS, Hamada N.

Zootaxa. 2017 Nov 28;4358(1):45-78. doi: 10.11646/zootaxa.4358.1.2.

PMID:
29245480
11.

Draft Genome Sequence of the Naturally Competent Bacillus simplex Strain WY10.

Keen EC, Bliskovsky VV, Adhya SL, Dantas G.

Genome Announc. 2017 Nov 16;5(46). pii: e01295-17. doi: 10.1128/genomeA.01295-17.

12.

Draft Genome Sequence of a Salmonella enterica Serovar Typhi Strain Resistant to Fourth-Generation Cephalosporin and Fluoroquinolone Antibiotics.

Gul D, Potter RF, Riaz H, Ashraf ST, Wallace MA, Munir T, Ali A, Burnham CA, Dantas G, Andleeb S.

Genome Announc. 2017 Oct 19;5(42). pii: e00850-17. doi: 10.1128/genomeA.00850-17.

13.

DNA sampling from eggshells and microsatellite genotyping in rare tropical birds: Case study on Brazilian Merganser.

Maia TA, Vilaça ST, Silva LRD, Santos FR, Dantas GPM.

Genet Mol Biol. 2017 Oct-Dec;40(4):808-812. doi: 10.1590/1678-4685-GMB-2016-0297. Epub 2017 Oct 2.

14.

Comparative genome-wide polymorphic microsatellite markers in Antarctic penguins through next generation sequencing.

Vianna JA, Noll D, Mura-Jornet I, Valenzuela-Guerra P, González-Acuña D, Navarro C, Loyola DE, Dantas GPM.

Genet Mol Biol. 2017 Jul-Sep 01;40(3):676-687. doi: 10.1590/1678-4685-GMB-2016-0224.

15.

Draft Genome Sequences of Three β-Lactam-Catabolizing Soil Proteobacteria.

Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G.

Genome Announc. 2017 Aug 10;5(32). pii: e00653-17. doi: 10.1128/genomeA.00653-17.

16.

Xanthomonas citri MinC Oscillates from Pole to Pole to Ensure Proper Cell Division and Shape.

Lorenzoni ASG, Dantas GC, Bergsma T, Ferreira H, Scheffers DJ.

Front Microbiol. 2017 Jul 19;8:1352. doi: 10.3389/fmicb.2017.01352. eCollection 2017.

17.

Structural and Functional Survey of Environmental Aminoglycoside Acetyltransferases Reveals Functionality of Resistance Enzymes.

Xu Z, Stogios PJ, Quaile AT, Forsberg KJ, Patel S, Skarina T, Houliston S, Arrowsmith C, Dantas G, Savchenko A.

ACS Infect Dis. 2017 Sep 8;3(9):653-665. doi: 10.1021/acsinfecdis.7b00068. Epub 2017 Aug 16.

PMID:
28756664
18.

Draft Genome Sequence of the blaOXA-436- and blaNDM-1-Harboring Shewanella putrefaciens SA70 Isolate.

Potter RF, D'Souza AW, Wallace MA, Shupe A, Patel S, Gul D, Kwon JH, Andleeb S, Burnham CA, Dantas G.

Genome Announc. 2017 Jul 20;5(29). pii: e00644-17. doi: 10.1128/genomeA.00644-17.

19.

Contrasting patterns of selection between MHC I and II across populations of Humboldt and Magellanic penguins.

Sallaberry-Pincheira N, González-Acuña D, Padilla P, Dantas GPM, Luna-Jorquera G, Frere E, Valdés-Velásquez A, Vianna JA.

Ecol Evol. 2016 Sep 28;6(20):7498-7510. doi: 10.1002/ece3.2502. eCollection 2016 Oct.

20.

Two new Neotropical species of Djalmabatista Fittkau (Diptera: Chironomidae).

Dantas GPS, Hamada N.

Zootaxa. 2017 Apr 6;4250(4):367-377. doi: 10.11646/zootaxa.4250.4.7.

PMID:
28610013
21.

Plasticity, dynamics, and inhibition of emerging tetracycline resistance enzymes.

Park J, Gasparrini AJ, Reck MR, Symister CT, Elliott JL, Vogel JP, Wencewicz TA, Dantas G, Tolia NH.

Nat Chem Biol. 2017 Jul;13(7):730-736. doi: 10.1038/nchembio.2376. Epub 2017 May 8.

22.

Next-generation approaches to understand and combat the antibiotic resistome.

Crofts TS, Gasparrini AJ, Dantas G.

Nat Rev Microbiol. 2017 Jul;15(7):422-434. doi: 10.1038/nrmicro.2017.28. Epub 2017 Apr 10. Review.

23.

The niche and phylogeography of a passerine reveal the history of biological diversification between the Andean and the Atlantic forests.

Trujillo-Arias N, Dantas GPM, Arbeláez-Cortés E, Naoki K, Gómez MI, Santos FR, Miyaki CY, Aleixo A, Tubaro PL, Cabanne GS.

Mol Phylogenet Evol. 2017 Jul;112:107-121. doi: 10.1016/j.ympev.2017.03.025. Epub 2017 Apr 3.

24.

Herpes simplex lesion mimicking left upper lobe bronchial tumour.

Dantas GC, Shoji H, Hoelz C, Funari MBG, Szarf G.

Thorax. 2018 Jan;73(1):94-95. doi: 10.1136/thoraxjnl-2017-210026. Epub 2017 Feb 28. No abstract available.

PMID:
28246221
25.

Evaluation of Machine Learning and Rules-Based Approaches for Predicting Antimicrobial Resistance Profiles in Gram-negative Bacilli from Whole Genome Sequence Data.

Pesesky MW, Hussain T, Wallace M, Patel S, Andleeb S, Burnham CD, Dantas G.

Front Microbiol. 2016 Nov 28;7:1887. eCollection 2016.

26.

Marked phylogeographic structure of Gentoo penguin reveals an ongoing diversification process along the Southern Ocean.

Vianna JA, Noll D, Dantas GPM, Petry MV, Barbosa A, González-Acuña D, Le Bohec C, Bonadonna F, Poulin E.

Mol Phylogenet Evol. 2017 Feb;107:486-498. doi: 10.1016/j.ympev.2016.12.003. Epub 2016 Dec 8.

PMID:
27940333
27.

The rapid spread of carbapenem-resistant Enterobacteriaceae.

Potter RF, D'Souza AW, Dantas G.

Drug Resist Updat. 2016 Nov;29:30-46. doi: 10.1016/j.drup.2016.09.002. Epub 2016 Sep 19. Review.

28.

Functional Metagenomics to Study Antibiotic Resistance.

Boolchandani M, Patel S, Dantas G.

Methods Mol Biol. 2017;1520:307-329. doi: 10.1007/978-1-4939-6634-9_19.

PMID:
27873261
29.

Contextual organismality: Beyond pattern to process in the emergence of organisms.

Díaz-Muñoz SL, Boddy AM, Dantas G, Waters CM, Bronstein JL.

Evolution. 2016 Dec;70(12):2669-2677. doi: 10.1111/evo.13078. Epub 2016 Oct 27.

30.

Genomic and functional techniques to mine the microbiome for novel antimicrobials and antimicrobial resistance genes.

Adu-Oppong B, Gasparrini AJ, Dantas G.

Ann N Y Acad Sci. 2017 Jan;1388(1):42-58. doi: 10.1111/nyas.13257. Epub 2016 Oct 21. Review.

31.

Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome.

Gibson MK, Wang B, Ahmadi S, Burnham CA, Tarr PI, Warner BB, Dantas G.

Nat Microbiol. 2016 Mar 7;1:16024. doi: 10.1038/nmicrobiol.2016.24.

32.

Antibiotic perturbation of the preterm infant gut microbiome and resistome.

Gasparrini AJ, Crofts TS, Gibson MK, Tarr PI, Warner BB, Dantas G.

Gut Microbes. 2016 Sep 2;7(5):443-9. doi: 10.1080/19490976.2016.1218584. Epub 2016 Jul 29. Review.

33.

A new species of Metapelopia Silva, Oliveira & Trivinho-Strixino (Diptera: Chironomidae) from Peru.

Dantas GP, Hamada N, Araujo AA.

Zootaxa. 2016 Jul 8;4137(1):49-60. doi: 10.11646/zootaxa.4137.1.3.

PMID:
27395740
34.
35.

Transcriptomic analysis illuminates genes involved in chlorophyll synthesis after nitrogen starvation in Acaryochloris sp. CCMEE 5410.

Yoneda A, Wittmann BJ, King JD, Blankenship RE, Dantas G.

Photosynth Res. 2016 Aug;129(2):171-82. doi: 10.1007/s11120-016-0279-1. Epub 2016 Jun 9.

PMID:
27276888
36.

Interconnected microbiomes and resistomes in low-income human habitats.

Pehrsson EC, Tsukayama P, Patel S, Mejía-Bautista M, Sosa-Soto G, Navarrete KM, Calderon M, Cabrera L, Hoyos-Arango W, Bertoli MT, Berg DE, Gilman RH, Dantas G.

Nature. 2016 May 12;533(7602):212-6. doi: 10.1038/nature17672.

37.

The effects of antibiotics on the microbiome throughout development and alternative approaches for therapeutic modulation.

Langdon A, Crook N, Dantas G.

Genome Med. 2016 Apr 13;8(1):39. doi: 10.1186/s13073-016-0294-z. Review.

38.

A protein expression system for tandem affinity purification in Xanthomonas citri subsp. citri.

Dantas GC, Martins PM, Martins DA, Gomes E, Ferreira H.

Braz J Microbiol. 2016 Apr-Jun;47(2):518-26. doi: 10.1016/j.bjm.2016.01.026. Epub 2016 Mar 2.

39.

Denopelopia amicitia, a new Tanypodinae from Brazil (Diptera, Chironomidae).

Dantas GP, Hamada N, Mendes HF.

Zookeys. 2016 Jan 14;(553):107-17. doi: 10.3897/zookeys.553.5988. eCollection 2016.

40.

Comparative transcriptomics elucidates adaptive phenol tolerance and utilization in lipid-accumulating Rhodococcus opacus PD630.

Yoneda A, Henson WR, Goldner NK, Park KJ, Forsberg KJ, Kim SJ, Pesesky MW, Foston M, Dantas G, Moon TS.

Nucleic Acids Res. 2016 Mar 18;44(5):2240-54. doi: 10.1093/nar/gkw055. Epub 2016 Feb 2.

41.

Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis.

Krueger AS, Munck C, Dantas G, Church GM, Galagan J, Lehár J, Sommer MO.

PLoS One. 2016 Jan 28;11(1):e0147651. doi: 10.1371/journal.pone.0147651. eCollection 2016.

42.

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

Kaminski J, Gibson MK, Franzosa EA, Segata N, Dantas G, Huttenhower C.

PLoS Comput Biol. 2015 Dec 18;11(12):e1004557. doi: 10.1371/journal.pcbi.1004557. eCollection 2015 Dec.

43.

Identification of Genes Conferring Tolerance to Lignocellulose-Derived Inhibitors by Functional Selections in Soil Metagenomes.

Forsberg KJ, Patel S, Witt E, Wang B, Ellison TD, Dantas G.

Appl Environ Microbiol. 2015 Nov 6;82(2):528-37. doi: 10.1128/AEM.02838-15. Print 2016 Jan 15.

44.

Synergistic, collaterally sensitive β-lactam combinations suppress resistance in MRSA.

Gonzales PR, Pesesky MW, Bouley R, Ballard A, Biddy BA, Suckow MA, Wolter WR, Schroeder VA, Burnham CA, Mobashery S, Chang M, Dantas G.

Nat Chem Biol. 2015 Nov;11(11):855-61. doi: 10.1038/nchembio.1911. Epub 2015 Sep 14.

45.

Antibiotics and the developing infant gut microbiota and resistome.

Gibson MK, Crofts TS, Dantas G.

Curr Opin Microbiol. 2015 Oct;27:51-6. doi: 10.1016/j.mib.2015.07.007. Epub 2015 Aug 1. Review.

46.

The microbiome of uncontacted Amerindians.

Clemente JC, Pehrsson EC, Blaser MJ, Sandhu K, Gao Z, Wang B, Magris M, Hidalgo G, Contreras M, Noya-Alarcón Ó, Lander O, McDonald J, Cox M, Walter J, Oh PL, Ruiz JF, Rodriguez S, Shen N, Song SJ, Metcalf J, Knight R, Dantas G, Dominguez-Bello MG.

Sci Adv. 2015 Apr 3;1(3). pii: e1500183.

47.

Erratum: Gut resistome development in healthy twin pairs in the first year of life.

Moore AM, Ahmadi S, Patel S, Gibson MK, Wang B, Ndao IM, Deych E, Shannon W, Tarr PI, Warner BB, Dantas G.

Microbiome. 2015 Jul 23;3:29. doi: 10.1186/s40168-015-0095-4. eCollection 2015.

48.

Gut resistome development in healthy twin pairs in the first year of life.

Moore AM, Ahmadi S, Patel S, Gibson MK, Wang B, Ndao MI, Deych E, Shannon W, Tarr PI, Warner BB, Dantas G.

Microbiome. 2015 Jun 25;3:27. doi: 10.1186/s40168-015-0090-9. eCollection 2015. Erratum in: Microbiome. 2015;3:29.

49.

The Tetracycline Destructases: A Novel Family of Tetracycline-Inactivating Enzymes.

Forsberg KJ, Patel S, Wencewicz TA, Dantas G.

Chem Biol. 2015 Jul 23;22(7):888-97. doi: 10.1016/j.chembiol.2015.05.017. Epub 2015 Jun 18.

50.

KPC and NDM-1 genes in related Enterobacteriaceae strains and plasmids from Pakistan and the United States.

Pesesky MW, Hussain T, Wallace M, Wang B, Andleeb S, Burnham CA, Dantas G.

Emerg Infect Dis. 2015 Jun;21(6):1034-7. doi: 10.3201/eid2106.141504.

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