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Items: 35

1.

Is it really penetration? Part 2. Locomotion of Enterococcus faecalis cells within dentinal tubules of bovine teeth.

Kirsch J, Basche S, Neunzehn J, Dede M, Dannemann M, Hannig C, Weber MT.

Clin Oral Investig. 2019 Mar 19. doi: 10.1007/s00784-019-02865-5. [Epub ahead of print]

PMID:
30888514
2.

Effects of Endodontic Irrigants on Material and Surface Properties of Biocompatible Thermoplastics.

Kucher M, Dannemann M, Modler N, Hannig C, Weber MT.

Dent J (Basel). 2019 Mar 6;7(1). pii: E26. doi: 10.3390/dj7010026.

3.

Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity.

Gunz P, Tilot AK, Wittfeld K, Teumer A, Shapland CY, van Erp TGM, Dannemann M, Vernot B, Neubauer S, Guadalupe T, Fernández G, Brunner HG, Enard W, Fallon J, Hosten N, Völker U, Profico A, Di Vincenzo F, Manzi G, Kelso J, St Pourcain B, Hublin JJ, Franke B, Pääbo S, Macciardi F, Grabe HJ, Fisher SE.

Curr Biol. 2019 Mar 4;29(5):895. doi: 10.1016/j.cub.2019.02.008. No abstract available.

4.

Design and Testing of a Co-Rotating Vibration Excitation System.

Filippatos A, Wollmann T, Nguyen M, Kostka P, Dannemann M, Langkamp A, Salles L, Gude M.

Sensors (Basel). 2018 Dec 28;19(1). pii: E92. doi: 10.3390/s19010092.

5.

Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity.

Gunz P, Tilot AK, Wittfeld K, Teumer A, Shapland CY, van Erp TGM, Dannemann M, Vernot B, Neubauer S, Guadalupe T, Fernández G, Brunner HG, Enard W, Fallon J, Hosten N, Völker U, Profico A, Di Vincenzo F, Manzi G, Kelso J, St Pourcain B, Hublin JJ, Franke B, Pääbo S, Macciardi F, Grabe HJ, Fisher SE.

Curr Biol. 2019 Jan 7;29(1):120-127.e5. doi: 10.1016/j.cub.2018.10.065. Epub 2018 Dec 13. Erratum in: Curr Biol. 2019 Mar 4;29(5):895.

6.

RNA-seq analysis identifies different transcriptomic types and developmental trajectories of primary melanomas.

Kunz M, Löffler-Wirth H, Dannemann M, Willscher E, Doose G, Kelso J, Kottek T, Nickel B, Hopp L, Landsberg J, Hoffmann S, Tüting T, Zigrino P, Mauch C, Utikal J, Ziemer M, Schulze HJ, Hölzel M, Roesch A, Kneitz S, Meierjohann S, Bosserhoff A, Binder H, Schartl M.

Oncogene. 2018 Nov;37(47):6136-6151. doi: 10.1038/s41388-018-0385-y. Epub 2018 Jul 11.

PMID:
29995873
7.

Something old, something borrowed: admixture and adaptation in human evolution.

Dannemann M, Racimo F.

Curr Opin Genet Dev. 2018 Dec;53:1-8. doi: 10.1016/j.gde.2018.05.009. Epub 2018 Jun 9. Review.

PMID:
29894925
8.

Expression signatures of early-stage and advanced medaka melanomas.

Klotz B, Kneitz S, Regensburger M, Hahn L, Dannemann M, Kelso J, Nickel B, Lu Y, Boswell W, Postlethwait J, Warren W, Kunz M, Walter RB, Schartl M.

Comp Biochem Physiol C Toxicol Pharmacol. 2018 Jun;208:20-28. doi: 10.1016/j.cbpc.2017.11.005. Epub 2017 Nov 21.

PMID:
29162497
9.

The Contribution of Neanderthals to Phenotypic Variation in Modern Humans.

Dannemann M, Kelso J.

Am J Hum Genet. 2017 Oct 5;101(4):578-589. doi: 10.1016/j.ajhg.2017.09.010.

10.

A high-coverage Neandertal genome from Vindija Cave in Croatia.

Prüfer K, de Filippo C, Grote S, Mafessoni F, Korlević P, Hajdinjak M, Vernot B, Skov L, Hsieh P, Peyrégne S, Reher D, Hopfe C, Nagel S, Maricic T, Fu Q, Theunert C, Rogers R, Skoglund P, Chintalapati M, Dannemann M, Nelson BJ, Key FM, Rudan P, Kućan Ž, Gušić I, Golovanova LV, Doronichev VB, Patterson N, Reich D, Eichler EE, Slatkin M, Schierup MH, Andrés AM, Kelso J, Meyer M, Pääbo S.

Science. 2017 Nov 3;358(6363):655-658. doi: 10.1126/science.aao1887. Epub 2017 Oct 5.

11.

Is it really penetration? Locomotion of devitalized Enterococcus faecalis cells within dentinal tubules of bovine teeth.

Kirsch J, Basche S, Neunzehn J, Dede M, Dannemann M, Hannig C, Weber MT.

Arch Oral Biol. 2017 Nov;83:289-296. doi: 10.1016/j.archoralbio.2017.08.012. Epub 2017 Aug 25.

PMID:
28865352
12.

Using the Neandertal genome to study the evolution of small insertions and deletions in modern humans.

Chintalapati M, Dannemann M, Prüfer K.

BMC Evol Biol. 2017 Aug 4;17(1):179. doi: 10.1186/s12862-017-1018-8.

13.

Detecting ancient positive selection in humans using extended lineage sorting.

Peyrégne S, Boyle MJ, Dannemann M, Prüfer K.

Genome Res. 2017 Sep;27(9):1563-1572. doi: 10.1101/gr.219493.116. Epub 2017 Jul 18.

14.

Functional implications of Neandertal introgression in modern humans.

Dannemann M, Prüfer K, Kelso J.

Genome Biol. 2017 Apr 3;18(1):61. doi: 10.1186/s13059-017-1181-7.

15.

An Approach for a Mathematical Description of Human Root Canals by Means of Elementary Parameters.

Dannemann M, Kucher M, Kirsch J, Binkowski A, Modler N, Hannig C, Weber MT.

J Endod. 2017 Apr;43(4):536-543. doi: 10.1016/j.joen.2016.11.011. Epub 2017 Feb 28. Review.

PMID:
28258813
16.

Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations.

Quach H, Rotival M, Pothlichet J, Loh YE, Dannemann M, Zidane N, Laval G, Patin E, Harmant C, Lopez M, Deschamps M, Naffakh N, Duffy D, Coen A, Leroux-Roels G, Clément F, Boland A, Deleuze JF, Kelso J, Albert ML, Quintana-Murci L.

Cell. 2016 Oct 20;167(3):643-656.e17. doi: 10.1016/j.cell.2016.09.024.

17.

Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne.

Welker F, Hajdinjak M, Talamo S, Jaouen K, Dannemann M, David F, Julien M, Meyer M, Kelso J, Barnes I, Brace S, Kamminga P, Fischer R, Kessler BM, Stewart JR, Pääbo S, Collins MJ, Hublin JJ.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):11162-11167. Epub 2016 Sep 16.

18.

ABAEnrichment: an R package to test for gene set expression enrichment in the adult and developing human brain.

Grote S, Prüfer K, Kelso J, Dannemann M.

Bioinformatics. 2016 Oct 15;32(20):3201-3203. Epub 2016 Jun 26.

19.

Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals.

Vernot B, Tucci S, Kelso J, Schraiber JG, Wolf AB, Gittelman RM, Dannemann M, Grote S, McCoy RC, Norton H, Scheinfeldt LB, Merriwether DA, Koki G, Friedlaender JS, Wakefield J, Pääbo S, Akey JM.

Science. 2016 Apr 8;352(6282):235-9. doi: 10.1126/science.aad9416. Epub 2016 Mar 17.

20.

Genetic Evidence of Human Adaptation to a Cooked Diet.

Carmody RN, Dannemann M, Briggs AW, Nickel B, Groopman EE, Wrangham RW, Kelso J.

Genome Biol Evol. 2016 Apr 13;8(4):1091-103. doi: 10.1093/gbe/evw059.

21.

Introgression of Neandertal- and Denisovan-like Haplotypes Contributes to Adaptive Variation in Human Toll-like Receptors.

Dannemann M, Andrés AM, Kelso J.

Am J Hum Genet. 2016 Jan 7;98(1):22-33. doi: 10.1016/j.ajhg.2015.11.015. Erratum in: Am J Hum Genet. 2016 Feb 4;98(2):399.

22.

Contesting the presence of wheat in the British Isles 8,000 years ago by assessing ancient DNA authenticity from low-coverage data.

Weiß CL, Dannemann M, Prüfer K, Burbano HA.

Elife. 2015 Nov 3;4. pii: e10005. doi: 10.7554/eLife.10005.

23.

Lineage-Specific Changes in Biomarkers in Great Apes and Humans.

Ronke C, Dannemann M, Halbwax M, Fischer A, Helmschrodt C, Brügel M, André C, Atencia R, Mugisha L, Scholz M, Ceglarek U, Thiery J, Pääbo S, Prüfer K, Kelso J.

PLoS One. 2015 Aug 6;10(8):e0134548. doi: 10.1371/journal.pone.0134548. eCollection 2015.

24.

Long-Term Balancing Selection in LAD1 Maintains a Missense Trans-Species Polymorphism in Humans, Chimpanzees, and Bonobos.

Teixeira JC, de Filippo C, Weihmann A, Meneu JR, Racimo F, Dannemann M, Nickel B, Fischer A, Halbwax M, Andre C, Atencia R, Meyer M, Parra G, Pääbo S, Andrés AM.

Mol Biol Evol. 2015 May;32(5):1186-96. doi: 10.1093/molbev/msv007. Epub 2015 Jan 19.

PMID:
25605789
25.

Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance.

Schreiweis C, Bornschein U, Burguière E, Kerimoglu C, Schreiter S, Dannemann M, Goyal S, Rea E, French CA, Puliyadi R, Groszer M, Fisher SE, Mundry R, Winter C, Hevers W, Pääbo S, Enard W, Graybiel AM.

Proc Natl Acad Sci U S A. 2014 Sep 30;111(39):14253-8. doi: 10.1073/pnas.1414542111. Epub 2014 Sep 15.

26.

The genomic landscape of Neanderthal ancestry in present-day humans.

Sankararaman S, Mallick S, Dannemann M, Prüfer K, Kelso J, Pääbo S, Patterson N, Reich D.

Nature. 2014 Mar 20;507(7492):354-7. doi: 10.1038/nature12961. Epub 2014 Jan 29.

27.

The complete genome sequence of a Neanderthal from the Altai Mountains.

Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, Kuhlwilm M, Lachmann M, Meyer M, Ongyerth M, Siebauer M, Theunert C, Tandon A, Moorjani P, Pickrell J, Mullikin JC, Vohr SH, Green RE, Hellmann I, Johnson PL, Blanche H, Cann H, Kitzman JO, Shendure J, Eichler EE, Lein ES, Bakken TE, Golovanova LV, Doronichev VB, Shunkov MV, Derevianko AP, Viola B, Slatkin M, Reich D, Kelso J, Pääbo S.

Nature. 2014 Jan 2;505(7481):43-9. doi: 10.1038/nature12886. Epub 2013 Dec 18.

28.

High-throughput sequencing of the melanoma genome.

Kunz M, Dannemann M, Kelso J.

Exp Dermatol. 2013 Jan;22(1):10-7. doi: 10.1111/exd.12054. Epub 2012 Nov 22.

29.

'maskBAD'--a package to detect and remove Affymetrix probes with binding affinity differences.

Dannemann M, Lachmann M, Lorenc A.

BMC Bioinformatics. 2012 Apr 16;13:56. doi: 10.1186/1471-2105-13-56.

30.

Transcription factors are targeted by differentially expressed miRNAs in primates.

Dannemann M, Prüfer K, Lizano E, Nickel B, Burbano HA, Kelso J.

Genome Biol Evol. 2012;4(4):552-64. doi: 10.1093/gbe/evs033. Epub 2012 Mar 27.

31.

Annotation of primate miRNAs by high throughput sequencing of small RNA libraries.

Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J.

BMC Genomics. 2012 Mar 27;13:116. doi: 10.1186/1471-2164-13-116.

32.

Statistical tests for associations between two directed acyclic graphs.

Hoehndorf R, Ngonga Ngomo AC, Dannemann M, Kelso J.

PLoS One. 2010 Jun 16;5(6):e10996. doi: 10.1371/journal.pone.0010996.

33.

The effects of probe binding affinity differences on gene expression measurements and how to deal with them.

Dannemann M, Lorenc A, Hellmann I, Khaitovich P, Lachmann M.

Bioinformatics. 2009 Nov 1;25(21):2772-9. doi: 10.1093/bioinformatics/btp492. Epub 2009 Aug 18.

PMID:
19689957
34.

Transcriptional neoteny in the human brain.

Somel M, Franz H, Yan Z, Lorenc A, Guo S, Giger T, Kelso J, Nickel B, Dannemann M, Bahn S, Webster MJ, Weickert CS, Lachmann M, Pääbo S, Khaitovich P.

Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5743-8. doi: 10.1073/pnas.0900544106. Epub 2009 Mar 23.

35.

PatMaN: rapid alignment of short sequences to large databases.

Prüfer K, Stenzel U, Dannemann M, Green RE, Lachmann M, Kelso J.

Bioinformatics. 2008 Jul 1;24(13):1530-1. doi: 10.1093/bioinformatics/btn223. Epub 2008 May 8.

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