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Items: 1 to 50 of 149

1.

The effects of desynchronosis on the gut microbiota composition and physiological parameters of rats.

Klimina KM, Batotsyrenova EG, Yunes RA, Gilyaeva EH, Poluektova EU, Kostrova TA, Kudryavtseva AV, Odorskaya MV, Kashuro VA, Kasianov AS, Ivanov MB, Danilenko VN.

BMC Microbiol. 2019 Jul 12;19(1):160. doi: 10.1186/s12866-019-1535-2.

2.

Identification, functional and structural characterization of novel aminoglycoside phosphotransferase APH(3″)-Id from Streptomyces rimosus subsp. rimosus ATCC 10970.

Alekseeva MG, Boyko KM, Nikolaeva AY, Mavletova DA, Rudakova NN, Zakharevich NV, Korzhenevskiy DA, Ziganshin RH, Popov VO, Danilenko VN.

Arch Biochem Biophys. 2019 Aug 15;671:111-122. doi: 10.1016/j.abb.2019.06.008. Epub 2019 Jun 26.

PMID:
31251922
3.

Synthesis and antimycobacterial activity of imidazo[1,2-b][1,2,4,5]tetrazines.

Maslov DA, Korotina AV, Shur KV, Vatlin AA, Bekker OB, Tolshchina SG, Ishmetova RI, Ignatenko NK, Rusinov GL, Charushin VN, Danilenko VN.

Eur J Med Chem. 2019 Sep 15;178:39-47. doi: 10.1016/j.ejmech.2019.05.081. Epub 2019 May 31.

PMID:
31176094
4.

Synthesis, antimicrobial and antiproliferative properties of epi-oligomycin A, the (33S)-diastereomer of oligomycin A.

Lysenkova LN, Saveljev OY, Omelchuk OA, Zatonsky GV, Korolev AM, Grammatikova NE, Bekker OB, Danilenko VN, Dezhenkova LG, Mavletova DA, Scherbakov AM, Shchekotikhin AE.

Nat Prod Res. 2019 May 10:1-9. doi: 10.1080/14786419.2019.1608540. [Epub ahead of print]

PMID:
31075992
5.

Draft Genome Sequences of 12 Mycolicibacterium smegmatis Strains Resistant to Imidazo[1,2-b][1,2,4,5]Tetrazines.

Vatlin AA, Shur KV, Danilenko VN, Maslov DA.

Microbiol Resour Announc. 2019 Apr 18;8(16). pii: e00263-19. doi: 10.1128/MRA.00263-19.

6.

Employing toxin-antitoxin genome markers for identification of Bifidobacterium and Lactobacillus strains in human metagenomes.

Klimina KM, Kasianov AS, Poluektova EU, Emelyanov KV, Voroshilova VN, Zakharevich NV, Kudryavtseva AV, Makeev VJ, Danilenko VN.

PeerJ. 2019 Mar 4;7:e6554. doi: 10.7717/peerj.6554. eCollection 2019.

7.

Mutations in Efflux Pump Rv1258c (Tap) Cause Resistance to Pyrazinamide, Isoniazid, and Streptomycin in M. tuberculosis.

Liu J, Shi W, Zhang S, Hao X, Maslov DA, Shur KV, Bekker OB, Danilenko VN, Zhang Y.

Front Microbiol. 2019 Feb 19;10:216. doi: 10.3389/fmicb.2019.00216. eCollection 2019.

8.

Neuropeptides in the microbiota-brain axis and feeding behavior in autism spectrum disorder.

Fetissov SO, Averina OV, Danilenko VN.

Nutrition. 2019 May;61:43-48. doi: 10.1016/j.nut.2018.10.030. Epub 2018 Oct 27. Review.

PMID:
30684851
9.

Draft Genome Sequence of Streptomyces xinghaiensis (fradiae) OlgR, a Strain Resistant to Oligomycin A.

Bekker OB, Vatlin AA, Zakharevich NV, Lysenkova LN, Shchekotikhin AE, Danilenko VN.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01531-18. doi: 10.1128/MRA.01531-18. eCollection 2019 Jan.

10.

Single nucleotide polymorphisms of Beijing lineage Mycobacterium tuberculosis toxin-antitoxin system genes: Their role in the changes of protein activity and evolution.

Zaychikova MV, Mikheecheva NE, Belay YO, Alekseeva MG, Melerzanov AV, Danilenko VN.

Tuberculosis (Edinb). 2018 Sep;112:11-19. doi: 10.1016/j.tube.2018.06.011. Epub 2018 Jun 12.

PMID:
30205962
11.

A functional study of the global transcriptional regulator PadR from a strain Streptomyces fradiae-nitR+bld, resistant to nitrone-oligomycin.

Vatlin AA, Bekker OB, Lysenkova LN, Shchekotikhin AE, Danilenko VN.

J Basic Microbiol. 2018 Sep;58(9):739-746. doi: 10.1002/jobm.201800095. Epub 2018 Jul 2.

PMID:
29963725
12.

Species-specific serine-threonine protein kinase Pkb2 of Bifidobacterium longum subsp. longum: Genetic environment and substrate specificity.

Nezametdinova VZ, Mavletova DA, Alekseeva MG, Chekalina MS, Zakharevich NV, Danilenko VN.

Anaerobe. 2018 Jun;51:26-35. doi: 10.1016/j.anaerobe.2018.03.003. Epub 2018 Mar 10.

PMID:
29534913
13.

Verification of oligomycin A structure: synthesis and biological evaluation of 33-dehydrooligomycin A.

Lysenkova LN, Saveljev OY, Grammatikova NE, Tsvetkov VB, Bekker OB, Danilenko VN, Dezhenkova LG, Bykov EE, Omelchuk OA, Korolev AM, Shchekotikhin AE.

J Antibiot (Tokyo). 2017 Jul;70(8):871-877. doi: 10.1038/ja.2017.48. Epub 2017 Apr 19.

PMID:
28420869
14.

A Nonsynonymous SNP Catalog of Mycobacterium tuberculosis Virulence Genes and Its Use for Detecting New Potentially Virulent Sublineages.

Mikheecheva NE, Zaychikova MV, Melerzanov AV, Danilenko VN.

Genome Biol Evol. 2017 Apr 1;9(4):887-899. doi: 10.1093/gbe/evx053.

15.

The Lactobacillus rhamnosus and Lactobacillus fermentum strains from human biotopes characterized with MLST and toxin-antitoxin gene polymorphism.

Poluektova EU, Yunes RA, Epiphanova MV, Orlova VS, Danilenko VN.

Arch Microbiol. 2017 Jul;199(5):683-690. doi: 10.1007/s00203-017-1346-5. Epub 2017 Feb 17.

PMID:
28213763
16.

Human Intestinal Microbiota: Role in Development and Functioning of the Nervous System.

Averina OV, Danilenko VN.

Mikrobiologiia. 2017 Jan-Feb;86(1):5-24. Review. Russian.

PMID:
30207138
17.

GABA production and structure of gadB/gadC genes in Lactobacillus and Bifidobacterium strains from human microbiota.

Yunes RA, Poluektova EU, Dyachkova MS, Klimina KM, Kovtun AS, Averina OV, Orlova VS, Danilenko VN.

Anaerobe. 2016 Dec;42:197-204. doi: 10.1016/j.anaerobe.2016.10.011. Epub 2016 Oct 26.

PMID:
27794467
18.

Draft genome sequence of Mycobacterium tuberculosis strain B9741 of Beijing B0/W lineage from HIV positive patient from Siberia.

Shur KV, Zaychikova MV, Mikheecheva NE, Klimina KM, Bekker OB, Zhdanova SN, Ogarkov OB, Danilenko VN.

Genom Data. 2016 Aug 3;10:61-62. eCollection 2016 Dec.

19.

Structural characterization of the novel aminoglycoside phosphotransferase AphVIII from Streptomyces rimosus with enzymatic activity modulated by phosphorylation.

Boyko KM, Gorbacheva MA, Korzhenevskiy DA, Alekseeva MG, Mavletova DA, Zakharevich NV, Elizarov SM, Rudakova NN, Danilenko VN, Popov VO.

Biochem Biophys Res Commun. 2016 Sep 2;477(4):595-601. doi: 10.1016/j.bbrc.2016.06.097. Epub 2016 Jun 20.

PMID:
27338640
20.

[Sequencing and analysis of the resistome of Streptomyces fradiae ATCC19609 in order to develop a test system for screening of new antimicrobial agents].

Vatlin AA, Bekker OB, Lysenkova LN, Korolev AM, Shchekotikhin AE, Danilenko VN.

Genetika. 2016 Jun;52(6):723-7. Russian.

PMID:
29368834
21.

Synthesis and antimycobacterial activity of N-(2-aminopurin-6-yl) and N-(purin-6-yl) amino acids and dipeptides.

Krasnov VP, Vigorov AY, Musiyak VV, Nizova IA, Gruzdev DA, Matveeva TV, Levit GL, Kravchenko MA, Skornyakov SN, Bekker OB, Danilenko VN, Charushin VN.

Bioorg Med Chem Lett. 2016 Jun 1;26(11):2645-8. doi: 10.1016/j.bmcl.2016.04.017. Epub 2016 Apr 9.

PMID:
27107949
22.

Mycobacterium tuberculosis Type II Toxin-Antitoxin Systems: Genetic Polymorphisms and Functional Properties and the Possibility of Their Use for Genotyping.

Zaychikova MV, Zakharevich NV, Sagaidak MO, Bogolubova NA, Smirnova TG, Andreevskaya SN, Larionova EE, Alekseeva MG, Chernousova LN, Danilenko VN.

PLoS One. 2015 Dec 14;10(12):e0143682. doi: 10.1371/journal.pone.0143682. eCollection 2015.

23.

Isolation and Purification of Recombinant Serine/Threonine Protein Kinases of the Strain Bifidobacterium longum B379M and Investigation of Their Activity.

Alekseeva MG, Mavletova DA, Kolchina NV, Nezametdinova VZ, Danilenko VN.

Biochemistry (Mosc). 2015 Oct;80(10):1303-11. doi: 10.1134/S0006297915100119.

24.

Draft Genome Sequence of Streptomyces fradiae olg1-1, a Strain Resistant to Nitrone-Oligomycin.

Vatlin AA, Bekker OB, Lysenkova LN, Danilenko VN.

Genome Announc. 2015 Oct 22;3(5). pii: e01252-15. doi: 10.1128/genomeA.01252-15.

25.

Draft Genome Sequences of Two Pyrazinamide-Resistant Clinical Isolates, Mycobacterium tuberculosis 13-4152 and 13-2459.

Maslov DA, Shur KV, Bekker OB, Zakharevich NV, Zaichikova MV, Klimina KM, Smirnova TG, Zhang Y, Chernousova LN, Danilenko VN.

Genome Announc. 2015 Jul 2;3(4). pii: e00758-15. doi: 10.1128/genomeA.00758-15.

26.

Draft Genome Sequences of Bifidobacterium angulatum GT102 and Bifidobacterium adolescentis 150: Focusing on the Genes Potentially Involved in the Gut-Brain Axis.

Dyachkova MS, Klimina KM, Kovtun AS, Zakharevich NV, Nezametdinova VZ, Averina OV, Danilenko VN.

Genome Announc. 2015 Jul 2;3(4). pii: e00709-15. doi: 10.1128/genomeA.00709-15.

27.

Resistance to pyrazinamide in Russian Mycobacterium tuberculosis isolates: pncA sequencing versus Bactec MGIT 960.

Maslov DA, Zaĭchikova MV, Chernousova LN, Shur KV, Bekker OB, Smirnova TG, Larionova EE, Andreevskaya SN, Zhang Y, Danilenko VN.

Tuberculosis (Edinb). 2015 Sep;95(5):608-12. doi: 10.1016/j.tube.2015.05.013. Epub 2015 Jun 2.

PMID:
26071666
28.

[The characteristics of probiotic properties of strains of genus of bifidobacterium separated from gastrointestinal tract of residents of the central region of Russia].

Beliaeva EA, Chervinetz YV, Chervinetz VM, Troshin AV, Mironov AY, Nezametdinova VZ, Averina OV, Danilenko VN.

Klin Lab Diagn. 2015 Feb;60(2):53-8. Russian.

PMID:
26027262
29.

Draft Genome Sequence of Mycobacterium tuberculosis Strain E186hv of Beijing B0/W Lineage with Reduced Virulence.

Shur KV, Klimina KM, Zakharevich NV, Maslov DA, Bekker OB, Zaychikova MV, Kamaev EY, Kravchenko MA, Skornyakov SN, Zhang Y, Danilenko VN.

Genome Announc. 2015 May 7;3(3). pii: e00403-15. doi: 10.1128/genomeA.00403-15.

30.

Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes.

Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN.

Microb Ecol. 2015 Oct;70(3):819-34. doi: 10.1007/s00248-015-0603-x. Epub 2015 Apr 17.

PMID:
25894918
31.

Draft Genome Sequences of Lactobacillus plantarum Strain 90sk and Lactobacillus brevis Strain 15f: Focusing on Neurotransmitter Genes.

Yunes RA, Klimina KM, Emelyanov KV, Zakharevich NV, Poluektova EU, Danilenko VN.

Genome Announc. 2015 Apr 16;3(2). pii: e00261-15. doi: 10.1128/genomeA.00261-15.

32.

Expression of the toxin-antitoxin genes yefM(Lrh), yoeB(Lrh) in human Lactobacillus rhamnosus isolates.

Krügel H, Klimina KM, Mrotzek G, Tretyakov A, Schöfl G, Saluz HP, Brantl S, Poluektova EU, Danilenko VN.

J Basic Microbiol. 2015 Aug;55(8):982-91. doi: 10.1002/jobm.201400904. Epub 2015 Apr 1.

PMID:
25832734
33.

FoF1-ATP synthase of Streptomyces fradiae ATCC 19609: structural, biochemical, and functional characterization.

Alekseeva MG, Mironcheva TA, Mavletova DA, Elizarov SM, Zakharevich NV, Danilenko VN.

Biochemistry (Mosc). 2015 Mar;80(3):296-309. doi: 10.1134/S0006297915030050.

34.

[The virulence factors of Mycobacterium tuberculosis: genetic control, new conceptions].

Prozorov AA, Fedorova IA, Bekker OB, Danilenko VN.

Genetika. 2014 Aug;50(8):885-908. Review. Russian.

PMID:
25731019
35.

Complete Genome Sequence of Bifidobacterium longum GT15: Unique Genes for Russian Strains.

Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN.

Genome Announc. 2014 Dec 18;2(6). pii: e01348-14. doi: 10.1128/genomeA.01348-14.

36.

Draft Genome Sequence of Streptomyces fradiae ATCC 19609, a Strain Highly Sensitive to Antibiotics.

Bekker OB, Klimina KM, Vatlin AA, Zakharevich NV, Kasianov AS, Danilenko VN.

Genome Announc. 2014 Dec 4;2(6). pii: e01247-14. doi: 10.1128/genomeA.01247-14.

37.

Identification and characterization of the serine/threonine protein kinases in Bifidobacterium.

Nezametdinova VZ, Zakharevich NV, Alekseeva MG, Averina OV, Mavletova DA, Danilenko VN.

Arch Microbiol. 2014 Feb;196(2):125-36. doi: 10.1007/s00203-013-0949-8. Epub 2014 Jan 7.

PMID:
24395073
38.

Study on retroaldol degradation products of antibiotic oligomycin A.

Lysenkova LN, Turchin KF, Korolev AM, Danilenko VN, Bekker OB, Dezhenkova LG, Shtil AA, Preobrazhenskaya MN.

J Antibiot (Tokyo). 2014 Feb;67(2):153-8. doi: 10.1038/ja.2013.92. Epub 2013 Oct 2.

PMID:
24084683
39.

[Distribution of genes of toxin-antitoxin systems of mazEF and relBE families in bifidobacteria from human intestinal microbiota].

Averina OV, Alekseeva MG, Abilev SK, Il'in VK, Danilenko VN.

Genetika. 2013 Mar;49(3):315-27. Russian.

PMID:
23755531
40.

Identification and characterization of toxin-antitoxin systems in strains of Lactobacillus rhamnosus isolated from humans.

Klimina KM, Kjasova DK, Poluektova EU, Krügel H, Leuschner Y, Saluz HP, Danilenko VN.

Anaerobe. 2013 Aug;22:82-9. doi: 10.1016/j.anaerobe.2013.05.007. Epub 2013 May 29.

PMID:
23727113
41.

[Systems of genes and proteins affecting mycobacteria virulence and their homologs participation in conjugation of mycobacterium smegmatis].

Prozorov AA, Zaichikova MV, Danilenko VN.

Genetika. 2013 Jan;49(1):125-41. Review. Russian.

PMID:
23662430
42.

Synthesis and cytotoxicity of oligomycin A derivatives modified in the side chain.

Lysenkova LN, Turchin KF, Korolev AM, Dezhenkova LG, Bekker OB, Shtil AA, Danilenko VN, Preobrazhenskaya MN.

Bioorg Med Chem. 2013 Jun 1;21(11):2918-24. doi: 10.1016/j.bmc.2013.03.081. Epub 2013 Apr 6.

PMID:
23623676
43.

[Genetic instability of probiotic characteristics in the Bifidobacterium longum subsp. longum B379M strain during cultivation and maintenance].

Averina OV, Nezametdinova VZ, Alekseeva MG, Danilenko VN.

Genetika. 2012 Nov;48(11):1287-96. Russian.

PMID:
23297484
44.

Identification of phosphorylation sites in aminoglycoside phosphotransferase VIII from Streptomyces rimosus.

Elizarov SM, Alekseeva MG, Novikov FN, Chilov GG, Maslov DA, Shtil AA, Danilenko VN.

Biochemistry (Mosc). 2012 Nov;77(11):1258-65. doi: 10.1134/S0006297912110041.

45.

Regioselective acylation of congeners of 3-amino-1H-pyrazolo[3,4-b]quinolines, their activity on bacterial serine/threonine protein kinases and in vitro antibacterial (including antimycobacterial) activity.

Lapa GB, Bekker OB, Mirchink EP, Danilenko VN, Preobrazhenskaya MN.

J Enzyme Inhib Med Chem. 2013 Oct;28(5):1088-93. doi: 10.3109/14756366.2012.716056. Epub 2012 Sep 7.

PMID:
22957725
46.

[Eukaryotic serine-threonine protein kinase inhibitors programmable lysis induction of Streptomyces lividans].

Bekker OB, Mavletova DA, Liubimova IK, Mironcheva TA, Shtil' AA, Danilenko VN.

Mikrobiologiia. 2012 Mar-Apr;81(2):177-84. Russian. No abstract available.

PMID:
22693826
47.

A novel acyclic oligomycin A derivative formed via retro-aldol rearrangement of oligomycin A.

Lysenkova LN, Turchin KF, Korolev AM, Bykov EE, Danilenko VN, Bekker OB, Trenin AS, Elizarov SM, Dezhenkova LG, Shtil AA, Preobrazhenskaya MN.

J Antibiot (Tokyo). 2012 Aug;65(8):405-11. doi: 10.1038/ja.2012.38. Epub 2012 May 23.

PMID:
22617550
48.

Identification and characterization of WhiB-like family proteins of the Bifidobacterium genus.

Averina OV, Zakharevich NV, Danilenko VN.

Anaerobe. 2012 Aug;18(4):421-9. doi: 10.1016/j.anaerobe.2012.04.011. Epub 2012 May 15.

PMID:
22609519
49.
50.

[The Pim family of protein kinases: structure, functions and roles in hematopoietic malignancies].

Zhukova IuN, Alekseeva MG, Zakharevich NV, Shtil' AA, Danilenko VN.

Mol Biol (Mosk). 2011 Sep-Oct;45(5):755-64. Review. Russian.

PMID:
22393773

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