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A summary of the fourth annual Virology Education HIV Microbiome workshop.

Williams B, Ghosh M, Boucher CAB, Bushman F, Carrington-Lawrence S, Collman R, Dandekar S, Dang Q, Malaspina A, Paredes R, Wilson C, Pinto-Cardoso S, Lagenaur L, Santos J, Joy C, Landay A.

AIDS Res Hum Retroviruses. 2020 Jan 9. doi: 10.1089/AID.2019.0197. [Epub ahead of print]


"Randomised controlled trial of scalp cooling for the prevention of chemotherapy induced alopecia".

Bajpai J, Kagwade S, Chandrasekharan A, Dandekar S, Kanan S, Kembhavi Y, Ghosh J, Banavali SD, Gupta S.

Breast. 2020 Feb;49:187-193. doi: 10.1016/j.breast.2019.12.004. Epub 2019 Dec 12.


PPARα-targeted mitochondrial bioenergetics mediate repair of intestinal barriers at the host-microbe intersection during SIV infection.

Crakes KR, Santos Rocha C, Grishina I, Hirao LA, Napoli E, Gaulke CA, Fenton A, Datta S, Arredondo J, Marco ML, Sankaran-Walters S, Cortopassi G, Giulivi C, Dandekar S.

Proc Natl Acad Sci U S A. 2019 Dec 3;116(49):24819-24829. doi: 10.1073/pnas.1908977116. Epub 2019 Nov 18.


Opportunities for Growth: Evaluating the Feasibility of a Community Gardening Intervention Pairing Adolescent and Young Adult Cancer Survivors with Experienced Gardeners.

Winkels RM, Artrip R, Tupinio M, Veldheer S, Dandekar SC, George DR.

J Adolesc Young Adult Oncol. 2020 Feb;9(1):115-119. doi: 10.1089/jayao.2019.0035. Epub 2019 Oct 3.


Disruption of latent HIV in vivo during the clearance of actinic keratosis by ingenol mebutate.

Jiang G, Maverakis E, Cheng MY, Elsheikh MM, Deleage C, Méndez-Lagares G, Shimoda M, Yukl SA, Hartigan-O'Connor DJ, Thompson GR 3rd, Estes JD, Wong JK, Dandekar S.

JCI Insight. 2019 Apr 4;4(7). pii: 126027. doi: 10.1172/jci.insight.126027. eCollection 2019 Apr 4.


Successful Treatment of Relapsed Pediatric Acute Myeloid Leukemia Presenting as Central Nervous System Myeloid Sarcoma: A Single-Institution Case Series.

Bujold KE, Dandekar S, Barbour M.

J Pediatr Hematol Oncol. 2018 Dec 12. doi: 10.1097/MPH.0000000000001383. [Epub ahead of print]


A Summary of the Third Annual HIV Microbiome Workshop.

Williams B, Boucher C, Bushman F, Carrington-Lawrence S, Collman R, Dandekar S, Dang Q, Malaspina A, Paredes R, Wilson C, Nowak P, Klatt N, Lagenaur L, Landay A.

AIDS Res Hum Retroviruses. 2018 Oct;34(10):828-834. doi: 10.1089/AID.2018.0103. Epub 2018 Oct 9.


Correction for Gaulke et al., "Intestinal Epithelial Barrier Disruption through Altered Mucosal MicroRNA Expression in Human Immunodeficiency Virus and Simian Immunodeficiency Virus Infections".

Gaulke CA, Porter M, Han YH, Sankaran-Walters S, Grishina I, George MD, Dang AT, Ding SW, Jiang G, Korf I, Dandekar S.

J Virol. 2018 May 29;92(12). pii: e00548-18. doi: 10.1128/JVI.00548-18. Print 2018 Jun 15. No abstract available.


Subclinical Cytomegalovirus Infection Is Associated with Altered Host Immunity, Gut Microbiota, and Vaccine Responses.

Santos Rocha C, Hirao LA, Weber MG, Méndez-Lagares G, Chang WLW, Jiang G, Deere JD, Sparger EE, Roberts J, Barry PA, Hartigan-O'Connor DJ, Dandekar S.

J Virol. 2018 Jun 13;92(13). pii: e00167-18. doi: 10.1128/JVI.00167-18. Print 2018 Jul 1.


HIV latency is reversed by ACSS2-driven histone crotonylation.

Jiang G, Nguyen D, Archin NM, Yukl SA, Méndez-Lagares G, Tang Y, Elsheikh MM, Thompson GR 3rd, Hartigan-O'Connor DJ, Margolis DM, Wong JK, Dandekar S.

J Clin Invest. 2018 Mar 1;128(3):1190-1198. doi: 10.1172/JCI98071. Epub 2018 Feb 19.


Oxidative Stress Markers in Tuberculosis and HIV/TB Co-Infection.

Rajopadhye SH, Mukherjee SR, Chowdhary AS, Dandekar SP.

J Clin Diagn Res. 2017 Aug;11(8):BC24-BC28. doi: 10.7860/JCDR/2017/28478.10473. Epub 2017 Aug 1.


A Summary of the Second Annual HIV Microbiome Workshop.

Williams B, Ghosh M, Boucher CAB, Bushman F, Carrington-Lawrence S, Collman RG, Dandekar S, Dang Q, Malaspina A, Paredes R, Wilson CC, Nowak P, Klatt NR, Lagenaur L, Landay AL.

AIDS Res Hum Retroviruses. 2017 Dec;33(12):1258-1264. doi: 10.1089/aid.2017.0137. Epub 2017 Oct 26.


Oncolytic Reactivation of KSHV as a Therapeutic Approach for Primary Effusion Lymphoma.

Zhou F, Shimoda M, Olney L, Lyu Y, Tran K, Jiang G, Nakano K, Davis RR, Tepper CG, Maverakis E, Campbell M, Li Y, Dandekar S, Izumiya Y.

Mol Cancer Ther. 2017 Nov;16(11):2627-2638. doi: 10.1158/1535-7163.MCT-17-0041. Epub 2017 Aug 28.


HIV Exploits Antiviral Host Innate GCN2-ATF4 Signaling for Establishing Viral Replication Early in Infection.

Jiang G, Santos Rocha C, Hirao LA, Mendes EA, Tang Y, Thompson GR 3rd, Wong JK, Dandekar S.

mBio. 2017 May 2;8(3). pii: e01518-16. doi: 10.1128/mBio.01518-16.


In vitro macrophage activation: A technique for screening anti-inflammatory, immunomodulatory and anticancer activity of phytomolecules.

Paradkar PH, Mishra LS, Joshi JV, Dandekar SP, Vaidya RA, Vaidya AB.

Indian J Exp Biol. 2017 Mar;55(3):133-41. Review.


Shared HLA Class I and II Alleles and Clonally Restricted Public and Private Brain-Infiltrating αβ T Cells in a Cohort of Rasmussen Encephalitis Surgery Patients.

Dandekar S, Wijesuriya H, Geiger T, Hamm D, Mathern GW, Owens GC.

Front Immunol. 2016 Dec 19;7:608. doi: 10.3389/fimmu.2016.00608. eCollection 2016.


Radiology Education in Africa: Analysis of Results From 13 African Countries.

Rehani B, Brown I, Dandekar S, Sarkodie B, Mwango G, Rehani MM, Lau L, Zhang YC, Dillon WP.

J Am Coll Radiol. 2017 Feb;14(2):247-252. doi: 10.1016/j.jacr.2016.08.012. Epub 2016 Nov 3. No abstract available.


MicroRNA-related polymorphisms and non-Hodgkin lymphoma susceptibility in the Multicenter AIDS Cohort Study.

Peckham-Gregory EC, Thapa DR, Martinson J, Duggal P, Penugonda S, Bream JH, Chang PY, Dandekar S, Chang SC, Detels R, Martínez-Maza O, Zhang ZF, Hussain SK.

Cancer Epidemiol. 2016 Dec;45:47-57. doi: 10.1016/j.canep.2016.09.007. Epub 2016 Oct 1.


Divergent Annexin A1 expression in periphery and gut is associated with systemic immune activation and impaired gut immune response during SIV infection.

Sena AA, Glavan T, Jiang G, Sankaran-Walters S, Grishina I, Dandekar S, Goulart LR.

Sci Rep. 2016 Aug 3;6:31157. doi: 10.1038/srep31157.


A Summary of the First HIV Microbiome Workshop 2015.

Williams B, Mirmonsef P, Boucher CA, Bushman F, Carrington-Lawrence S, Collman RG, Dandekar S, Dang Q, Malaspina A, Paredes R, Stone A, Landay A.

AIDS Res Hum Retroviruses. 2016 Oct/Nov;32(10-11):935-941. Epub 2016 Jul 14.


Lateralization in Alpha-Band Oscillations Predicts the Locus and Spatial Distribution of Attention.

Ikkai A, Dandekar S, Curtis CE.

PLoS One. 2016 May 4;11(5):e0154796. doi: 10.1371/journal.pone.0154796. eCollection 2016.


Loss of Multicellular Behavior in Epidemic African Nontyphoidal Salmonella enterica Serovar Typhimurium ST313 Strain D23580.

Singletary LA, Karlinsey JE, Libby SJ, Mooney JP, Lokken KL, Tsolis RM, Byndloss MX, Hirao LA, Gaulke CA, Crawford RW, Dandekar S, Kingsley RA, Msefula CL, Heyderman RS, Fang FC.

mBio. 2016 Mar 1;7(2):e02265. doi: 10.1128/mBio.02265-15.


HIV-1 Alters Intestinal Expression of Drug Transporters and Metabolic Enzymes: Implications for Antiretroviral Drug Disposition.

Kis O, Sankaran-Walters S, Hoque MT, Walmsley SL, Dandekar S, Bendayan R.

Antimicrob Agents Chemother. 2016 Apr 22;60(5):2771-81. doi: 10.1128/AAC.02278-15. Print 2016 May.


Hepatic Enzyme's Reference Intervals and Their Modulating Factors in Western Indian Population.

Maksane SN, Dandekar SP, Shukla A, Bhatia S.

Indian J Clin Biochem. 2016 Mar;31(1):108-16. doi: 10.1007/s12291-015-0508-y. Epub 2015 May 1.


Genomic Characterization of Poorly Differentiated Neuroendocrine Carcinoma in a Pediatric Patient.

Bhatla T, Dandekar S, Lu BY, Wang J, Han E, Bitterman D, Jones CL, Evensen NA, Magid M, Meyer JA, Carroll WL.

J Pediatr Hematol Oncol. 2016 Jan;38(1):e21-5. doi: 10.1097/MPH.0000000000000463.


Steric Crowding of the Turn Region Alters the Tertiary Fold of Amyloid-β18-35 and Makes It Soluble.

Chandrakesan M, Bhowmik D, Sarkar B, Abhyankar R, Singh H, Kallianpur M, Dandekar SP, Madhu PK, Maiti S, Mithu VS.

J Biol Chem. 2015 Dec 11;290(50):30099-107. doi: 10.1074/jbc.M115.674135. Epub 2015 Oct 20.


Gene expression and TB pathogenesis in rhesus macaques: TR4, CD40, CD40L, FAS (CD95), and TNF are host genetic markers in peripheral blood mononuclear cells that are associated with severity of TB lesions.

Roodgar M, Ross CT, Tarara R, Lowenstine L, Dandekar S, Smith DG.

Infect Genet Evol. 2015 Dec;36:396-409. doi: 10.1016/j.meegid.2015.10.010. Epub 2015 Oct 19.


Functional analysis of the relationship between intestinal microbiota and the expression of hepatic genes and pathways during the course of liver regeneration.

Liu HX, Rocha CS, Dandekar S, Wan YJ.

J Hepatol. 2016 Mar;64(3):641-50. doi: 10.1016/j.jhep.2015.09.022. Epub 2016 Jan 12.


Gut immune dysfunction through impaired innate pattern recognition receptor expression and gut microbiota dysbiosis in chronic SIV infection.

Glavan TW, Gaulke CA, Santos Rocha C, Sankaran-Walters S, Hirao LA, Raffatellu M, Jiang G, Bäumler AJ, Goulart LR, Dandekar S.

Mucosal Immunol. 2016 May;9(3):677-88. doi: 10.1038/mi.2015.92. Epub 2015 Sep 16.


MAPK signaling cascades mediate distinct glucocorticoid resistance mechanisms in pediatric leukemia.

Jones CL, Gearheart CM, Fosmire S, Delgado-Martin C, Evensen NA, Bride K, Waanders AJ, Pais F, Wang J, Bhatla T, Bitterman DS, de Rijk SR, Bourgeois W, Dandekar S, Park E, Burleson TM, Madhusoodhan PP, Teachey DT, Raetz EA, Hermiston ML, Müschen M, Loh ML, Hunger SP, Zhang J, Garabedian MJ, Porter CC, Carroll WL.

Blood. 2015 Nov 5;126(19):2202-12. doi: 10.1182/blood-2015-04-639138. Epub 2015 Aug 31.


SIV-infection-driven changes of pattern recognition receptor expression in mesenteric lymph nodes and gut microbiota dysbiosis.

Glavan TW, Gaulke CA, Hirao LA, Sankaran-Walters S, Dandekar S.

J Med Primatol. 2015 Oct;44(5):241-52. doi: 10.1111/jmp.12187. Epub 2015 Aug 14.


The rs10993994 in the proximal MSMB promoter region is a functional polymorphism in Asian Indian subjects.

Mhatre DR, Mahale SD, Khatkhatay MI, Achrekar SK, Desai SS, Jagtap DD, Dhabalia JV, Tongaonkar HB, Dandekar SP, Varadkar AM.

Springerplus. 2015 Jul 28;4:380. doi: 10.1186/s40064-015-1164-7. eCollection 2015.


Synergistic Reactivation of Latent HIV Expression by Ingenol-3-Angelate, PEP005, Targeted NF-kB Signaling in Combination with JQ1 Induced p-TEFb Activation.

Jiang G, Mendes EA, Kaiser P, Wong DP, Tang Y, Cai I, Fenton A, Melcher GP, Hildreth JE, Thompson GR, Wong JK, Dandekar S.

PLoS Pathog. 2015 Jul 30;11(7):e1005066. doi: 10.1371/journal.ppat.1005066. eCollection 2015 Jul.


HIT or Miss: The Sequential Diagnostic Approach to Heparin-Induced Thrombocytopenia Illustrated in a Child With Acute Post-Streptococcal Glomerulonephritis.

Sampat HN, Brandão LR, Tamburro RF, Kees-Folts D, Dandekar S.

Clin Pediatr (Phila). 2016 Mar;55(3):294-7. doi: 10.1177/0009922815586055. Epub 2015 May 11. No abstract available.


Genetic determinants of immunogenicity to factor IX during the treatment of haemophilia B.

Saini S, Hamasaki-Katagiri N, Pandey GS, Yanover C, Guelcher C, Simhadri VL, Dandekar S, Guerrera MF, Kimchi-Sarfaty C, Sauna ZE.

Haemophilia. 2015 Mar;21(2):210-8. doi: 10.1111/hae.12553. Epub 2014 Dec 2.


Association of COMT and TPH-2 genes with DSM-5 based PTSD symptoms.

Goenjian AK, Noble EP, Steinberg AM, Walling DP, Stepanyan ST, Dandekar S, Bailey JN.

J Affect Disord. 2015 Feb 1;172:472-8. doi: 10.1016/j.jad.2014.10.034. Epub 2014 Oct 22.


Cardiac pathology in chronic alcoholics: a preliminary study.

Vaideeswar P, Chaudhari C, Rane S, Gondhalekar J, Dandekar S.

J Postgrad Med. 2014 Oct-Dec;60(4):372-6. doi: 10.4103/0022-3859.143958.


Cytomegalovirus enhances macrophage TLR expression and MyD88-mediated signal transduction to potentiate inducible inflammatory responses.

Smith PD, Shimamura M, Musgrove LC, Dennis EA, Bimczok D, Novak L, Ballestas M, Fenton A, Dandekar S, Britt WJ, Smythies LE.

J Immunol. 2014 Dec 1;193(11):5604-12. doi: 10.4049/jimmunol.1302608. Epub 2014 Oct 29.


The dynamic roles played by a biochemist.

Dandekar SP, Rishi AM.

Indian J Clin Biochem. 2014 Oct;29(4):395-7. doi: 10.1007/s12291-014-0454-0. Epub 2014 Jul 27. No abstract available.


Targeting NF-κB signaling with protein kinase C agonists as an emerging strategy for combating HIV latency.

Jiang G, Dandekar S.

AIDS Res Hum Retroviruses. 2015 Jan;31(1):4-12. doi: 10.1089/AID.2014.0199. Review.


Transcriptional profiling of peripheral CD8+T cell responses to SIVΔnef and SIVmac251 challenge reveals a link between protective immunity and induction of systemic immunoregulatory mechanisms.

George MD, Hu W, Billingsley JM, Reeves RK, Sankaran-Walters S, Johnson RP, Dandekar S.

Virology. 2014 Nov;468-470:581-591. doi: 10.1016/j.virol.2014.09.013. Epub 2014 Oct 1.


Early mucosal sensing of SIV infection by paneth cells induces IL-1β production and initiates gut epithelial disruption.

Hirao LA, Grishina I, Bourry O, Hu WK, Somrit M, Sankaran-Walters S, Gaulke CA, Fenton AN, Li JA, Crawford RW, Chuang F, Tarara R, Marco ML, Bäumler AJ, Cheng H, Dandekar S.

PLoS Pathog. 2014 Aug 28;10(8):e1004311. doi: 10.1371/journal.ppat.1004311. eCollection 2014 Aug.


Wnt inhibition leads to improved chemosensitivity in paediatric acute lymphoblastic leukaemia.

Dandekar S, Romanos-Sirakis E, Pais F, Bhatla T, Jones C, Bourgeois W, Hunger SP, Raetz EA, Hermiston ML, Dasgupta R, Morrison DJ, Carroll WL.

Br J Haematol. 2014 Oct;167(1):87-99. doi: 10.1111/bjh.13011. Epub 2014 Jul 4.


Development of an ELISA for sPSP94 and utility of the sPSP94/sPSA ratio as a diagnostic indicator to differentiate between benign prostatic hyperplasia and prostate cancer.

Mhatre DR, Mahale SD, Khatkhatay MI, Desai SS, Jagtap DD, Dhabalia JV, Tongaonkar HB, Desai MP, Dandekar SP, Varadkar AM.

Clin Chim Acta. 2014 Sep 25;436:256-62. doi: 10.1016/j.cca.2014.06.006. Epub 2014 Jun 18.


Reactivation of HIV latency by a newly modified Ingenol derivative via protein kinase Cδ-NF-κB signaling.

Jiang G, Mendes EA, Kaiser P, Sankaran-Walters S, Tang Y, Weber MG, Melcher GP, Thompson GR 3rd, Tanuri A, Pianowski LF, Wong JK, Dandekar S.

AIDS. 2014 Jul 17;28(11):1555-66. doi: 10.1097/QAD.0000000000000289.


Intestinal epithelial barrier disruption through altered mucosal microRNA expression in human immunodeficiency virus and simian immunodeficiency virus infections.

Gaulke CA, Porter M, Han YH, Sankaran-Walters S, Grishina I, George MD, Dang AT, Ding SW, Jiang G, Korf I, Dandekar S.

J Virol. 2014 Jun;88(11):6268-80. doi: 10.1128/JVI.00097-14. Epub 2014 Mar 26. Erratum in: J Virol. 2018 May 29;92(12):.

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