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Items: 1 to 50 of 59

1.

Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in Phytophaga beetles.

Busch A, Danchin EGJ, Pauchet Y.

BMC Evol Biol. 2019 May 10;19(1):100. doi: 10.1186/s12862-019-1429-9.

2.

Contrasting Effects of Wild Arachis Dehydrin Under Abiotic and Biotic Stresses.

Mota APZ, Oliveira TN, Vinson CC, Williams TCR, Costa MMDC, Araujo ACG, Danchin EGJ, Grossi-de-Sá MF, Guimaraes PM, Brasileiro ACM.

Front Plant Sci. 2019 Apr 18;10:497. doi: 10.3389/fpls.2019.00497. eCollection 2019.

3.

Gene copy number variations as signatures of adaptive evolution in the parthenogenetic, plant-parasitic nematode Meloidogyne incognita.

Castagnone-Sereno P, Mulet K, Danchin EGJ, Koutsovoulos GD, Karaulic M, Da Rocha M, Bailly-Bechet M, Pratx L, Perfus-Barbeoch L, Abad P.

Mol Ecol. 2019 May;28(10):2559-2572. doi: 10.1111/mec.15095. Epub 2019 Apr 29.

PMID:
30964953
4.

Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance.

Mota APZ, Vidigal B, Danchin EGJ, Togawa RC, Leal-Bertioli SCM, Bertioli DJ, Araujo ACG, Brasileiro ACM, Guimaraes PM.

BMC Plant Biol. 2018 Aug 6;18(1):159. doi: 10.1186/s12870-018-1373-7.

5.

Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species.

Pratx L, Rancurel C, Da Rocha M, Danchin EGJ, Castagnone-Sereno P, Abad P, Perfus-Barbeoch L.

BMC Genomics. 2018 May 3;19(1):321. doi: 10.1186/s12864-018-4686-x.

6.

The Transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent Acquisition of Some Plant Parasitism Genes by Horizontal Gene Transfer in Early-Branching Nematodes.

Danchin EGJ, Perfus-Barbeoch L, Rancurel C, Thorpe P, Da Rocha M, Bajew S, Neilson R, Guzeeva ES, Da Silva C, Guy J, Labadie K, Esmenjaud D, Helder J, Jones JT, den Akker SE.

Genes (Basel). 2017 Oct 23;8(10). pii: E287. doi: 10.3390/genes8100287.

7.

Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life.

Rancurel C, Legrand L, Danchin EGJ.

Genes (Basel). 2017 Sep 29;8(10). pii: E248. doi: 10.3390/genes8100248.

8.

Prospects of herbivore egg-killing plant defenses for sustainable crop protection.

Fatouros NE, Cusumano A, Danchin EGJ, Colazza S.

Ecol Evol. 2016 Sep 7;6(19):6906-6918. doi: 10.1002/ece3.2365. eCollection 2016 Oct. Review.

9.

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.

Blanc-Mathieu R, Perfus-Barbeoch L, Aury JM, Da Rocha M, Gouzy J, Sallet E, Martin-Jimenez C, Bailly-Bechet M, Castagnone-Sereno P, Flot JF, Kozlowski DK, Cazareth J, Couloux A, Da Silva C, Guy J, Kim-Jo YJ, Rancurel C, Schiex T, Abad P, Wincker P, Danchin EGJ.

PLoS Genet. 2017 Jun 8;13(6):e1006777. doi: 10.1371/journal.pgen.1006777. eCollection 2017 Jun.

10.

Genome-wide analysis of expansin superfamily in wild Arachis discloses a stress-responsive expansin-like B gene.

Guimaraes LA, Mota APZ, Araujo ACG, de Alencar Figueiredo LF, Pereira BM, de Passos Saraiva MA, Silva RB, Danchin EGJ, Guimaraes PM, Brasileiro ACM.

Plant Mol Biol. 2017 May;94(1-2):79-96. doi: 10.1007/s11103-017-0594-8. Epub 2017 Feb 27.

11.
12.

Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks.

Damiani I, Drain A, Guichard M, Balzergue S, Boscari A, Boyer JC, Brunaud V, Cottaz S, Rancurel C, Da Rocha M, Fizames C, Fort S, Gaillard I, Maillol V, Danchin EG, Rouached H, Samain E, Su YH, Thouin J, Touraine B, Puppo A, Frachisse JM, Pauly N, Sentenac H.

Front Plant Sci. 2016 Jun 7;7:794. doi: 10.3389/fpls.2016.00794. eCollection 2016.

13.

The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence.

Eves-van den Akker S, Laetsch DR, Thorpe P, Lilley CJ, Danchin EG, Da Rocha M, Rancurel C, Holroyd NE, Cotton JA, Szitenberg A, Grenier E, Montarry J, Mimee B, Duceppe MO, Boyes I, Marvin JM, Jones LM, Yusup HB, Lafond-Lapalme J, Esquibet M, Sabeh M, Rott M, Overmars H, Finkers-Tomczak A, Smant G, Koutsovoulos G, Blok V, Mantelin S, Cock PJ, Phillips W, Henrissat B, Urwin PE, Blaxter M, Jones JT.

Genome Biol. 2016 Jun 10;17(1):124. doi: 10.1186/s13059-016-0985-1.

14.

Horizontal Gene Transfer of Pectinases from Bacteria Preceded the Diversification of Stick and Leaf Insects.

Shelomi M, Danchin EG, Heckel D, Wipfler B, Bradler S, Zhou X, Pauchet Y.

Sci Rep. 2016 May 23;6:26388. doi: 10.1038/srep26388.

15.

Horizontal Gene Transfer from Bacteria Has Enabled the Plant-Parasitic Nematode Globodera pallida to Feed on Host-Derived Sucrose.

Danchin EG, Guzeeva EA, Mantelin S, Berepiki A, Jones JT.

Mol Biol Evol. 2016 Jun;33(6):1571-9. doi: 10.1093/molbev/msw041. Epub 2016 Feb 25.

PMID:
26915958
16.

Signatures of adaptation to plant parasitism in nematode genomes.

Bird DM, Jones JT, Opperman CH, Kikuchi T, Danchin EG.

Parasitology. 2015 Feb;142 Suppl 1:S71-84. doi: 10.1017/S0031182013002163. Review.

17.

The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes.

Eves-van den Akker S, Lilley CJ, Danchin EG, Rancurel C, Cock PJ, Urwin PE, Jones JT.

Genome Biol Evol. 2014 Aug 13;6(9):2181-94. doi: 10.1093/gbe/evu171.

18.

Parasitic success without sex – the nematode experience.

Castagnone-Sereno P, Danchin EG.

J Evol Biol. 2014 Jul;27(7):1323-33. Review.

PMID:
25105196
19.

Identification of novel target genes for safer and more specific control of root-knot nematodes from a pan-genome mining.

Danchin EG, Arguel MJ, Campan-Fournier A, Perfus-Barbeoch L, Magliano M, Rosso MN, Da Rocha M, Da Silva C, Nottet N, Labadie K, Guy J, Artiguenave F, Abad P.

PLoS Pathog. 2013 Oct;9(10):e1003745. doi: 10.1371/journal.ppat.1003745. Epub 2013 Oct 31.

20.

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga.

Flot JF, Hespeels B, Li X, Noel B, Arkhipova I, Danchin EG, Hejnol A, Henrissat B, Koszul R, Aury JM, Barbe V, Barthélémy RM, Bast J, Bazykin GA, Chabrol O, Couloux A, Da Rocha M, Da Silva C, Gladyshev E, Gouret P, Hallatschek O, Hecox-Lea B, Labadie K, Lejeune B, Piskurek O, Poulain J, Rodriguez F, Ryan JF, Vakhrusheva OA, Wajnberg E, Wirth B, Yushenova I, Kellis M, Kondrashov AS, Mark Welch DB, Pontarotti P, Weissenbach J, Wincker P, Jaillon O, Van Doninck K.

Nature. 2013 Aug 22;500(7463):453-7. doi: 10.1038/nature12326. Epub 2013 Jul 21.

21.

Top 10 plant-parasitic nematodes in molecular plant pathology.

Jones JT, Haegeman A, Danchin EG, Gaur HS, Helder J, Jones MG, Kikuchi T, Manzanilla-López R, Palomares-Rius JE, Wesemael WM, Perry RN.

Mol Plant Pathol. 2013 Dec;14(9):946-61. doi: 10.1111/mpp.12057. Epub 2013 Jul 1. Review.

22.

Diversity and evolution of root-knot nematodes, genus Meloidogyne: new insights from the genomic era.

Castagnone-Sereno P, Danchin EG, Perfus-Barbeoch L, Abad P.

Annu Rev Phytopathol. 2013;51:203-20. doi: 10.1146/annurev-phyto-082712-102300. Epub 2013 May 13. Review.

PMID:
23682915
23.

Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes.

Paganini J, Campan-Fournier A, Da Rocha M, Gouret P, Pontarotti P, Wajnberg E, Abad P, Danchin EG.

PLoS One. 2012;7(11):e50875. doi: 10.1371/journal.pone.0050875. Epub 2012 Nov 30.

24.

Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants.

Arias MC, Danchin EG, Coutinho P, Henrissat B, Ball S.

Mob Genet Elements. 2012 Mar 1;2(2):81-87.

25.

Lateral gene transfers have polished animal genomes: lessons from nematodes.

Danchin EG, Rosso MN.

Front Cell Infect Microbiol. 2012 Mar 6;2:27. doi: 10.3389/fcimb.2012.00027. eCollection 2012. Review.

27.

A root-knot nematode-secreted protein is injected into giant cells and targeted to the nuclei.

Jaouannet M, Perfus-Barbeoch L, Deleury E, Magliano M, Engler G, Vieira P, Danchin EG, Da Rocha M, Coquillard P, Abad P, Rosso MN.

New Phytol. 2012 Jun;194(4):924-31. doi: 10.1111/j.1469-8137.2012.04164.x. Epub 2012 Apr 27.

28.

Single pH buffer refolding screen for protein from inclusion bodies.

Coutard B, Danchin EG, Oubelaid R, Canard B, Bignon C.

Protein Expr Purif. 2012 Apr;82(2):352-9. doi: 10.1016/j.pep.2012.01.014. Epub 2012 Feb 4.

PMID:
22343064
29.

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.

Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, Fournier E, Gout L, Hahn M, Kohn L, Lapalu N, Plummer KM, Pradier JM, Quévillon E, Sharon A, Simon A, ten Have A, Tudzynski B, Tudzynski P, Wincker P, Andrew M, Anthouard V, Beever RE, Beffa R, Benoit I, Bouzid O, Brault B, Chen Z, Choquer M, Collémare J, Cotton P, Danchin EG, Da Silva C, Gautier A, Giraud C, Giraud T, Gonzalez C, Grossetete S, Güldener U, Henrissat B, Howlett BJ, Kodira C, Kretschmer M, Lappartient A, Leroch M, Levis C, Mauceli E, Neuvéglise C, Oeser B, Pearson M, Poulain J, Poussereau N, Quesneville H, Rascle C, Schumacher J, Ségurens B, Sexton A, Silva E, Sirven C, Soanes DM, Talbot NJ, Templeton M, Yandava C, Yarden O, Zeng Q, Rollins JA, Lebrun MH, Dickman M.

PLoS Genet. 2011 Aug;7(8):e1002230. doi: 10.1371/journal.pgen.1002230. Epub 2011 Aug 18.

30.

An Arabidopsis (malectin-like) leucine-rich repeat receptor-like kinase contributes to downy mildew disease.

Hok S, Danchin EG, Allasia V, Panabières F, Attard A, Keller H.

Plant Cell Environ. 2011 Nov;34(11):1944-57. doi: 10.1111/j.1365-3040.2011.02390.x. Epub 2011 Jul 25.

31.

Horizontal gene transfer in nematodes: a catalyst for plant parasitism?

Haegeman A, Jones JT, Danchin EG.

Mol Plant Microbe Interact. 2011 Aug;24(8):879-87. doi: 10.1094/MPMI-03-11-0055. Review.

32.

Identifying discriminative classification-based motifs in biological sequences.

Vens C, Rosso MN, Danchin EG.

Bioinformatics. 2011 May 1;27(9):1231-8. doi: 10.1093/bioinformatics/btr110. Epub 2011 Mar 3.

PMID:
21372086
33.

Identification of plant-parasitism genes in nematodes in silico screening and in vivo validation in Meloidogyne incognita.

Arguel MJ, Campan-Fournier A, Perfus-Barbeoch L, Danchin EG, Rosso MN, Da Silva C, Labadie K, Marteu N, Artiguenave F, Abad P.

Commun Agric Appl Biol Sci. 2011;76(3):409-12. No abstract available.

PMID:
22696951
34.

A Medicago truncatula NADPH oxidase is involved in symbiotic nodule functioning.

Marino D, Andrio E, Danchin EG, Oger E, Gucciardo S, Lambert A, Puppo A, Pauly N.

New Phytol. 2011 Jan;189(2):580-92. doi: 10.1111/j.1469-8137.2010.03509.x. Epub 2010 Dec 13.

35.

The plant apoplasm is an important recipient compartment for nematode secreted proteins.

Vieira P, Danchin EG, Neveu C, Crozat C, Jaubert S, Hussey RS, Engler G, Abad P, de Almeida-Engler J, Castagnone-Sereno P, Rosso MN.

J Exp Bot. 2011 Jan;62(3):1241-53. doi: 10.1093/jxb/erq352. Epub 2010 Nov 29.

36.

Genome-wide survey and analysis of microsatellites in nematodes, with a focus on the plant-parasitic species Meloidogyne incognita.

Castagnone-Sereno P, Danchin EG, Deleury E, Guillemaud T, Malausa T, Abad P.

BMC Genomics. 2010 Oct 25;11:598. doi: 10.1186/1471-2164-11-598.

37.

Data-mining of the Meloidogyne incognita degradome and comparative analysis of proteases in nematodes.

Castagnone-Sereno P, Deleury E, Danchin EG, Perfus-Barbeoch L, Abad P.

Genomics. 2011 Jan;97(1):29-36. doi: 10.1016/j.ygeno.2010.10.002. Epub 2010 Oct 14.

38.

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes.

Danchin EG, Rosso MN, Vieira P, de Almeida-Engler J, Coutinho PM, Henrissat B, Abad P.

Proc Natl Acad Sci U S A. 2010 Oct 12;107(41):17651-6. doi: 10.1073/pnas.1008486107. Epub 2010 Sep 27.

39.

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.

Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, Houterman PM, Kang S, Shim WB, Woloshuk C, Xie X, Xu JR, Antoniw J, Baker SE, Bluhm BH, Breakspear A, Brown DW, Butchko RA, Chapman S, Coulson R, Coutinho PM, Danchin EG, Diener A, Gale LR, Gardiner DM, Goff S, Hammond-Kosack KE, Hilburn K, Hua-Van A, Jonkers W, Kazan K, Kodira CD, Koehrsen M, Kumar L, Lee YH, Li L, Manners JM, Miranda-Saavedra D, Mukherjee M, Park G, Park J, Park SY, Proctor RH, Regev A, Ruiz-Roldan MC, Sain D, Sakthikumar S, Sykes S, Schwartz DC, Turgeon BG, Wapinski I, Yoder O, Young S, Zeng Q, Zhou S, Galagan J, Cuomo CA, Kistler HC, Rep M.

Nature. 2010 Mar 18;464(7287):367-73. doi: 10.1038/nature08850.

40.

CASSIOPE: an expert system for conserved regions searches.

Rascol VL, Levasseur A, Chabrol O, Grusea S, Gouret P, Danchin EG, Pontarotti P.

BMC Bioinformatics. 2009 Sep 10;10:284. doi: 10.1186/1471-2105-10-284.

41.

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion.

Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S, Schwartz DC, Freitag M, Ma LJ, Danchin EG, Henrissat B, Coutinho PM, Nelson DR, Straney D, Napoli CA, Barker BM, Gribskov M, Rep M, Kroken S, Molnár I, Rensing C, Kennell JC, Zamora J, Farman ML, Selker EU, Salamov A, Shapiro H, Pangilinan J, Lindquist E, Lamers C, Grigoriev IV, Geiser DM, Covert SF, Temporini E, Vanetten HD.

PLoS Genet. 2009 Aug;5(8):e1000618. doi: 10.1371/journal.pgen.1000618. Epub 2009 Aug 28.

42.

The genomes of root-knot nematodes.

Bird DM, Williamson VM, Abad P, McCarter J, Danchin EG, Castagnone-Sereno P, Opperman CH.

Annu Rev Phytopathol. 2009;47:333-51. doi: 10.1146/annurev-phyto-080508-081839. Review.

PMID:
19400640
43.

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita.

Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, Esquibet M, Flutre T, Goldstone JV, Hamamouch N, Hewezi T, Jaillon O, Jubin C, Leonetti P, Magliano M, Maier TR, Markov GV, McVeigh P, Pesole G, Poulain J, Robinson-Rechavi M, Sallet E, Ségurens B, Steinbach D, Tytgat T, Ugarte E, van Ghelder C, Veronico P, Baum TJ, Blaxter M, Bleve-Zacheo T, Davis EL, Ewbank JJ, Favery B, Grenier E, Henrissat B, Jones JT, Laudet V, Maule AG, Quesneville H, Rosso MN, Schiex T, Smant G, Weissenbach J, Wincker P.

Nat Biotechnol. 2008 Aug;26(8):909-15. doi: 10.1038/nbt.1482. Epub 2008 Jul 27.

PMID:
18660804
44.

Evolution of major histocompatibility complex by "en bloc" duplication before mammalian radiation.

Darbo E, Danchin EG, Mc Dermott MF, Pontarotti P.

Immunogenetics. 2008 Aug;60(8):423-38. doi: 10.1007/s00251-008-0301-7. Epub 2008 Jun 17.

PMID:
18560826
45.

The genome sequence of the model ascomycete fungus Podospora anserina.

Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, Porcel BM, Couloux A, Aury JM, Ségurens B, Poulain J, Anthouard V, Grossetete S, Khalili H, Coppin E, Déquard-Chablat M, Picard M, Contamine V, Arnaise S, Bourdais A, Berteaux-Lecellier V, Gautheret D, de Vries RP, Battaglia E, Coutinho PM, Danchin EG, Henrissat B, Khoury RE, Sainsard-Chanet A, Boivin A, Pinan-Lucarré B, Sellem CH, Debuchy R, Wincker P, Weissenbach J, Silar P.

Genome Biol. 2008;9(5):R77. doi: 10.1186/gb-2008-9-5-r77. Epub 2008 May 6.

46.

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).

Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barabote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS.

Nat Biotechnol. 2008 May;26(5):553-60. doi: 10.1038/nbt1403. Epub 2008 May 4. Erratum in: Nat Biotechnol. 2008 Oct;26(10):1193.. Barbote, Ravi [corrected to Barabote, Ravi].

PMID:
18454138
47.

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis.

Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buée M, Brokstein P, Canbäck B, Cohen D, Courty PE, Coutinho PM, Delaruelle C, Detter JC, Deveau A, DiFazio S, Duplessis S, Fraissinet-Tachet L, Lucic E, Frey-Klett P, Fourrey C, Feussner I, Gay G, Grimwood J, Hoegger PJ, Jain P, Kilaru S, Labbé J, Lin YC, Legué V, Le Tacon F, Marmeisse R, Melayah D, Montanini B, Muratet M, Nehls U, Niculita-Hirzel H, Oudot-Le Secq MP, Peter M, Quesneville H, Rajashekar B, Reich M, Rouhier N, Schmutz J, Yin T, Chalot M, Henrissat B, Kües U, Lucas S, Van de Peer Y, Podila GK, Polle A, Pukkila PJ, Richardson PM, Rouzé P, Sanders IR, Stajich JE, Tunlid A, Tuskan G, Grigoriev IV.

Nature. 2008 Mar 6;452(7183):88-92. doi: 10.1038/nature06556.

PMID:
18322534
48.

Biotechnological applications and potential of fungal feruloyl esterases based on prevalence, classification and biochemical diversity.

Benoit I, Danchin EG, Bleichrodt RJ, de Vries RP.

Biotechnol Lett. 2008 Mar;30(3):387-96. Epub 2007 Nov 1. Review.

PMID:
17973091
49.

Conceptual bases for quantifying the role of the environment on gene evolution: the participation of positive selection and neutral evolution.

Levasseur A, Orlando L, Bailly X, Milinkovitch MC, Danchin EG, Pontarotti P.

Biol Rev Camb Philos Soc. 2007 Nov;82(4):551-72. Review.

PMID:
17944617
50.

Where do animal alpha-amylases come from? An interkingdom trip.

Da Lage JL, Danchin EG, Casane D.

FEBS Lett. 2007 Aug 21;581(21):3927-35. Epub 2007 Jul 20.

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